Distribution of sequence-dependent curvature in genomic DNA sequences

FEBS Letters

Volumn 406, Issue 1-2, 1997, Pages 69-74

  Gabrielian, Andrei ^a   Vlahovicek, Kristian ^a   Pongor, Sándor ^a  

^a INTERNATIONAL CENTRE FOR GENETIC ENGINEERING AND BIOTECHNOLOGY   (Italy)

Author keywords

DNA curvature; DNA structure; Genome analysis

Indexed keywords

CURVED DNA;

ARTICLE; BACTERIAL GENE; COMPARATIVE STUDY; CONTROLLED STUDY; DNA SEQUENCE; DNA STRUCTURE; GENETIC ANALYSIS; GENOME; HUMAN; NONHUMAN; PRIORITY JOURNAL; VIRUS GENOME; YEAST;

ANIMALS; DNA, BACTERIAL; DNA, MITOCHONDRIAL; DNA, VIRAL; GENOME; HUMANS; NUCLEIC ACID CONFORMATION;

ADENOVIRIDAE; BACTERIA (MICROORGANISMS); EQUIDAE; EQUINE HERPESVIRUS 1; EUKARYOTA; HERPES; HERPES VIRUS 1; HERPESVIRIDAE; HUMAN ADENOVIRUS TYPE 2; PROKARYOTA;

EID: 0030995510     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(97)00236-6     Document Type: Article

References (30)

1. Travers AA, Klug A. In: Cozzarelli NR, Wang JC, editors. DNA Topology and Its Biological Effects. New York: Cold Spring Harbor Laboratory, 1990:57-106.
2. Crothers D.M., Haran T.E., Nadeau J.G. J Biol Chem. 265:1990;7093-7096.
3. Brukner I., Susic S., Dlakic M., Savic A., Pongor S. J Mol Biol. 236:1994;26-32.
4. Brukner I., Dlakic M., Savic A., Susic S., Pongor S., Suck D. Nucl Acids Res. 21:1993;1025-1029.
5. Goodsell D.S., Dickerson R.E. Nucl Acids Res. 22:1994;5497-5503.
6. Shpigelman E.S., Trifonov E.N., Bolshoy A. Comp Appl Biosci. 9:1993;435-440.
7. De Santis P., Palleschi A., Savino M., Scipioni A. Biochemistry. 29:1990;9269-9273.
8. Lavery R., Sklenar H. J Biomol Struct Dynam. 6:1989;655-667.
9. El Hassan M.A., Calladine C.R. J Mol Biol. 251:1995;648-664.
10. Wing R., Drew H., Takano T., Broka C., Tanaka K., Itakura K., Dickerson R.E. Nature. 287:1980;755-758.
11. Gorin A.A., Zhurkin V.B., Olson W.K. J Mol Biol. 247:1995;34-48.
12. Bolshoy A., McNamara P., Harrington R.E., Trifonov E.N. Proc Natl Acad Sci USA. 88:1991;2312-2316.
13. Ulyanov N., James T. Methods Enzymol. 261:1995;90-115.
14. Gabrielian A., Pongor S. FEBS Lett. 393:1996;65-68.
15. Shlyakhtenko L.S., Liubchenko I., Chernov B.K., Zhurkin V.B. Molekulyarnaya Biol. (russ). 24:1990;66-81.
16. Calladine C.R., Collis C.M., Drew H.R., Mott M.R. J Mol Biol. 221:1991;981-1005.
17. Ulanovsky L., Bodner M., Trifonov E., Choder M. Proc Natl Acad Sci USA. 83:1986;862-866.
18. Koo H.S., Wu H.M., Crothers D. Nature. 320:1986;501-506.
19. Gabrielian A., Simoncsits A., Pongor S. FEBS Lett. 393:1996;124-130.
20. Suzuki M., Yagi N. J Mol Biol. 255:1996;677-687.
21. Hagerman P.J. Nature. 321:1986;449-450.
22. Calladine C.R., Drew H.R., McCall M.J. J Mol Biol. 201:1988;127-137.
23. Koo H.S., Wu H.M., Crothers D. Nature. 320:1986;501-506.
24. Ulanovsky L., Bodner M., Trifonov E., Choder M. Proc Natl Acad Sci USA. 83:1986;862-866.
25. Brukner I., Dlakic M., Savic A., Pongor S., Suck D. Nucl Acids Res. 21:1992;1025-1029.
26. Genbank CRBENSAT.
27. Bednar J., Furrer P., Katritch V., Stasiak A., Dubochet J. Mol Biol. 254:1995;579-594.
28. Lyubchenko Y., Shlyakhtenko L., Chernov B., Harrington R.E. Proc Natl Acad Sci USA. 88:1991;5331-5334.
29. Lyubchenko Y., Shlyakhtenko L.S., Appella E., Harrington R.E. Biochemistry. 32:1993;4121-4127.
30. Young M.A., Ravishanker G., Beveridge D.L., Berman H.M. Biophys J. 68:1995;2454-2468.