Mineral surfaces and their implications for microbial attachment: Results from Monte Carlo simulations and direct surface observations

American Journal of Science

Volumn 305, Issue 6-8 SPEC. ISS., 2005, Pages 766-790

  Luttge A ^a   Zhang, L ^a   Nealson, K H ^b  

^a RICE UNIVERSITY   (United States)

^b UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOGEOCHEMISTRY; MICROBIAL ACTIVITY; MINERAL; SURFACE;

EID: 32644436067     PISSN: 00029599     EISSN: None     Source Type: Journal    
DOI: 10.2475/ajs.305.6-8.766     Document Type: Review

References (81)

1. Amend, J. P., and Helgeson, H. C., 2000, Calculation of the standard molal thermodynamic properties of aqueous biomolecules at elevated temperatures and pressures II. Unfolded proteins: Biophysical Chemistry, v. 84, p. 105-136.
2. Arnold, R. G., DeChristina, T. J., and Hoffman, M. R., 1988, Reductive dissolution of Fe(III) oxides by Pseudomonas sp. 200: Biotechnology and Bioengineering, v. 32, p. 1081-1096.
3. Arvidson, R. S., Ertan, I. E., Amonette, J. E., and Lüttge, A., 2003, Rates of calcite dissolution obtained by vertical scanning interferometry: Geochimica et Cosmochimica Acta, v. 67, p. 1623-1634.
4. Arvidson, R. S., Beig, M. S., and Lüttge, A., 2004a, Single-crystal plagioclase feldspar dissolution rates measured by vertical scanning interferometry: American Mineralogist, v. 89, p. 51-56.
5. Arvidson, R. S., Davis, K. J., Collier, M., Amonette, J. E., and Lüttge, A., 2004b, Etch pit morphology and magnesium inhibition of calcite dissolution, in Wanty, R. B., and Seal, R. R., editors: Proceedings of the 11th Symposium on Water-Rock Interactions, p. 721-725.
6. Banfield, J. F., and Hamers, R. J., 1997, Processes at minerals and surfaces with relevance to microorganisms and prebiotic synthesis, in Banfield, J. F., and Nealson, K. H., editors, Geomicrobiology: interactions between microbes and minerals: Washington, D. C., Mineralogical Society of America, Reviews in Mineralogy, v. 35, p. 81-122.
7. Banfield, J. F., and Nealson, K. H., editors, 1997, Geomicrobiology: interactions between microbes and minerals: Washington, D. C., Mineralogical Society of America, Reviews in Mineralogy, v. 35, 448 p.
8. Barker, W. W., Welch, S. A., and Banfield, J. F., 1997, Biogeochemical weathering of silicate minerals, in Banfield, J. F., and Nealson, K. H., editors, Geomicrobiology: interactions between microbes and minerals: Washington, D. C., Mineralogical Society of America, Reviews in Mineralogy, v. 35, p. 391-428.
9. Barker, W. W., Welch, S. A., Chu, S., and Banfield, J. F., 1998, Experimental observations of the effects of bacteria on aluminosilicate weathering: American Mineralogist, v. 83, p. 1551-1563.
10. Berner, E. K., and Berner, R. A., 1995, Water, Air, and Geochemical Cycles: New York, Prentice Hall, 376 p.
11. Berner, R. A., 1992, Weathering, plants, and the long-term carbon cycle: Geochimica et Cosmochimica Acta, v.56, p. 3225-3231.
12. 2: Comptes Rendus Geosciences, v. 335, p. 1173-1177.
13. Berner, R. A., and Westrich, J. T., 1985, Bioturbation and the early diagenesis of carbon and sulfur: American Journal of Science, v. 285, p. 193-206.
14. Blum, A. E., and Lasaga, A. C., 1987, Monte Carlo simulations of surface reaction rate laws, in Stumm, W., editor, Aquatic surface chemistry: Chemical processes at the particle-water interface: New York, J. Wiley, p. 255-292.
15. Borrok, D., and Fein, J. B., 2004, Distribution of protons and Cd between bacterial surfaces and dissolved humic substances determined through chemical equilibrium modeling: Geochimica et Cosmochimica Acta, v. 68, p. 3043-3052.
16. Borrok, D., Fein, J. B., and Kulpa, C. F., 2004, Proton and Cd adsorption onto natural bacterial consortia: testing universal adsorption behavior: Geochimica et Cosmochimica Acta, v. 68, p. 3231-3238.
17. Brantley, S. L., Liermann, L. J., Guynn, R. L., Anbar, A., Icopini, G. A., and Barling, J., 2004, Fe isotopic fractionation during mineral dissolution with and without bacteria: Geochimica et Cosmochimica Acta, v. 68, p. 3189-3204.
18. Buss, H. L., Brantley, S. L., and Liermann, L. J., 2003, Nondestructive methods for removal of bacteria from silicate surfaces: Geomicrobiology Journal, v. 20, 25-42.
19. Characklis, W. G., and Marshall, K. C., 1990, Biofilms: A basis for an interdisciplinary approach, in Characklis, W. G., and Marshall, K. C., editors, Biofilms: New York, J. Wiley and Sons, p. 3-16.
20. Davis, K. J., and Lüttge, A., 2005, Quantifying the potential role of microbial surface colonization in determining the mechanism and rate of carbonate dissolution: American Journal of Science, v. 305, p. 727-751.
21. Davis, K. J., Conrad, P. G., and Lüttge, A., 2004, The mechanistic consequences of microbial surface colonization on carbonate mineral dissolution, in Wanty, R. B., and Seal, R. R., II, editors: Proceedings of the 11th Symposium on Water-Rock Interactions, v. 2, Saratoga Springs, New York, June 27-July 2, 2004: London, United Kingdom, Taylor and Francis Group, p. 1101-1105.
22. Dove, P. M., De Yoreo, J. J., and Weiner, S., editors, 2003, Biomineralization: Washington, D. C., Mineralogical Society of America and Geochemical Society, Reviews in Mineralogy and Geochemistry, v. 54, 381 p.
23. Escher, A., and Characklis, W. G., 1990, Modeling the initial events in biofilm accumulation, in Characklis, W. G., and Marshall, K. C., editors, Biofilms: New York, J. Wiley and Sons, p. 445-486.
24. Fein, J. B., 2000, Quantifying the effects of bacteria on adsorption reactions in water-rock systems: Chemical Geology, v. 169, p. 265-280.
25. Frost, P. C., Maurice, P. A., and Fein, J. B., 2003, The effect of cadmium on fulvic acid adsorption to Bacillus subtilis: Chemical Geology, v. 200, p. 217-224.
26. Gilmer, G. H., 1976, Growth on imperfect crystal faces. I. Monte Carlo growth rates: Journal of Crystal Growth, v. 35, p. 15-28.
27. Gilmer, G. H., 1977, Computer simulation of crystal growth: Journal of Crystal Growth, v. 42, p. 3-10.
28. Gilmer, G. H., 1980, Computer models of crystal growth: Science, v. 208, p. 355-363.
29. Helgeson, H. C., and Amend, J. P., 1994, Relative stabilities of biomolecules at high temperatures and pressures: Thermochimica Acta, v. 245, p. 89-119.
30. Hinsinger, P., Jaillard, B., and Duffery, J. E., 1992, Rapid weathering of trioctahedral mica by the roots of ryegrass: Soil Science Society of America Journal, v. 56, p. 977-982.
31. Jin, Q., and Bethke, C. M., 2003, A new rate law describing microbial respiration: Applied and Environmental Microbiology, v. 69, p. 2340-2348.
32. Kendall, T. A., and Hochella, M. F., Jr., 2003, Measurement and interpretation of molecular-level forces of interaction between the siderophore azotobactin and mineral surfaces: Geochimica et Cosmochimica Acta, v. 67, p. 3537-3546.
33. Larsen, L, Little, B., Nealson, K. H., Ray, R., Stone, A., and Tian, J., 1998, Manganite reduction by Shewanella putrefaciens MR-4: American Mineralogist, v. 83, p. 1564-1572.
34. Lasaga, A. C., 1990, Atomic treatment of mineral-water surface reactions, in Hochella, M. F., Jr., and White, A. F., editors, Mineral-water interface geochemistry: Washington, D. C., Mineralogical Society of America, Reviews in Mineralogy, v. 23, p. 17-85.
35. Lasaga, A. C., 1998, Kinetic theory in earth sciences: Princeton Series in Geochemistry. Princeton, New Jersery, Princeton University Press, 811 p.
36. Lasaga, A. C., and Blum, A. E., 1986, Surface chemistry, etch pits and mineral-water reactions: Geochimica et Cosmochimica Acta, v. 50, p. 2363-2379.
37. Lasaga, A. C., and Lüttge, A., 2001, Variation of crystal dissolution rate based on a dissolution stepwave model: Science, v. 291, p. 2400-2404.
38. Lasaga, A. C., 2003, A model for crystal dissolution: European Journal of Mineralogy, v. 15, p. 603-615.
39. Lasaga, A. C., 2004a, Kinetic justification of the solubility product: Application of a general kinetic dissolution model: Journal of Physical Chemistry, Part B, v. 109, p. 1635-1642.
40. 3B structure: European Journal of Mineralogy, v. 16, p. 713-729.
41. Lasaga, A. C., 2004c, Mineralogical approaches to fundamental crystal dissolution kinetics: American Mineralogist, v. 89, p. 527-540.
42. Lee, S. K., and Stebbins, J. F., 1999, The degree of aluminum avoidance in aluminosilicate glasses: American Mineralogist, v. 84, p. 937-945.
43. Leyval, C., and Berthelink, J., 1991, Weathering of a mica by roots and rhizospheric microorganisms of pine: Soil Science Society of America Journal, v. 55, p. 1009-1016.
44. Little, B. J., Wagner P. A., and Lewandowski, Z., 1997a, Spatial relationships between bacteria and mineral surfaces, in Banfield, J. F., and Nealson, K. H., editors, Geomicrobiology: Interactions between and microbes and minerals: Washington, D. C., The Mineralogical Society of America,-Reviews in Mineralogy, v. 35, p. 123-159.
45. Little, B. J., Wagner, P., Hart, K., Ray, R., Lavoie, D., Nealson, K. H., and Aguilar, C., 1997b, The role of metal-reducing bacteria in microbiologically influenced corrosion: Houston, Texas, Corrosion, National Association of Corrosion Engineers, v. 97, 215, 1.
46. Lovley, D. R., editor, 2000, Environmental microbe-metal interactions: Washington, D. C., ASM Press, 395 p.
47. Lovley, D. R., and Phillips, E. J., 1988, Novel mode of microbial energy metabolism: Organic carbon oxidation coupled to dissimilatory reduction of iron or manganese: Applied and Environmental Microbiology, v. 51, p. 683-689.
48. Lovley, D. R., Phillips, E. J., and Lonergan, D. J., 1991, Enzymatic versus nonenzymatic mechanisms for Fe(III) reduction in aquatic sediments: Environmental Science and Technology, v. 25, p. 1062-1067.
49. Lower, S. K., Tadanier, C. J., and Hochella, M. F., Jr., 2000, Measuring interfacial and adhesion forces between bacteria and mineral surfaces with biological force microscopy: Geochimica et Cosmochimica Acta, v. 64, p. 3133-3139.
50. Lower, S. K., Hochella, M. F., Jr., and Beveridge, T. J., 2001, Bacterial recognition of mineral surfaces: Nanoscale interactions between Shewanella and alpha-FeOOH: Science, v. 292, p. 1360-1363.
51. Lüttge, A., 2004, Connecting the molecular- with the macro-scale: An integrated approach towards a quantitative understanding of crystal dissolution, in Wanty, R. B., and Seal, R. R., editors, Proceedings of the 11th Symposium on Water-Rock Interactions, v. 1: London, United Kingdom, Taylor and Francis Group, p. 841-844.
52. Lüttge, A., 2004, Crystal Dissolution Kinetics studied by Vertical Scanning Interferometry (VSI) and Monte Carlo simulations: A Brief Review and Outlook, in Liu, X. Y., and De Yoreo, J. J., editors, Nanoscale structure and assembly at solid-fluid interfaces. Vol. I. Interfacial Structures versus Dynamics. Series on Nanoscience and Technologies: The Netherlands, Kluwer Academic Publishers, v. 1, 700 p.
53. Lüttge, A., 2005, A kinetic model of etch pit coalescence and dissolution: American Mineralogist, v. 90, p. 1776-1783.
54. Lüttge, A., and Conrad, P. G., 2004, Bacterial control of calcite dissolution kinetics: Applied and Environmental Microbiology, v. 70, p. 1627-1637.
55. Lüttge, A., Bolton, E. W., and Lasaga, A. C., 1999, An interferometric study of the dissolution kinetics of anorthite: The role of reactive surface area, in Canfield, D., and Boudreau, B., editors, Biogeochemical cycles and their evolution over geologic time. A special triple issue as a tribute to the career of Robert A. Berner: American Journal of Science, v. 299, p. 652-678.
56. Lüttge, A., Winkler, U., and Lasaga, A. C., 2003, Interferometric study of the dolomite dissolution: A new conceptual model for mineral dissolution: Geochimica et Cosmochimica Acta, v. 67, p. 1099-1116.
57. Myers, C. R., and Nealson, K. H., 1988, Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor: Science, v. 240, p. 1319-1321.
58. Nealson, K. H., and Little, B., 1997, Breathing manganese and iron: solid-state respiration: Advances in Applied Microbiology, v. 45, p. 213-239.
59. Nealson, K. H., and Stahl, D. A., 1997, Microorganisms and biogeochemical cycles: what can we learn from layered microbial communities? in Banfield, J. F., and Nealson, K. H., editors, Geomicrobiology: Interactions between microbes and minerals: Washington D. C., Mineralogical Society of America, Reviews in Mineralogy, v. 35, p. 1-34.
60. Nevin, K. P., and Lovley, D. R., 2000, Lack of production of electron-shuttling compounds or solubilization of Fe(III) during reduction of insoluble Fe(III) oxide by Geobacter metallireducens: Applied and Environmental Microbiology, v. 66, p. 2248-2251.
61. Newman, D. K., and Kolter, R., 2000, A role for excreted quinones in extracellular electron transfer: Nature, v. 405, 94-97.
62. Novitsky, J. A., 1981, Calcium-carbonate precipitation by marine-bacteria: Geomicrobiology, v. 2, p. 375-388.
63. Oelkers, E., 2001, General kinetic description of multioxide silicate mineral and glass dissolution: Geochimica et Cosmochimica Acta, v. 65, p. 3703-3720.
64. Patch, F. E., Davis, K. J., Conrad, P. G., and Lfittge, A., 2002, Microbial recognition of calcite surface microtopograhy: Towards an understanding of calcite dissolution rates in biological environments; abstract: GSA 002 Fall meeting, Denver, CO., October 27-30, 2002.
65. Philpot, M., 2004, Atomic scale modeling of the solid-liquid interface, in Liu, X. Y., and De Yoreo, J. J., editors, Nanoscale structure and assembly at solid-fluid interfaces. Vol. I. Interfacial Structures versus Dynamics, Series on Nanoscience and Technologies: The Netherlands, Kluwer Academic Publisher, 70 p.
66. Rogers, J. R., Bennett, P. C., and Choi, W. J., 1998, Feldspar as a source of nutrients for microorganisms: American Mineralogist, v. 83, p. 1532-1540.
67. Rosso, K. M., Zachara, J. M., Fredrickson, J. K., Gorby, Y. A., and Smith, S. C., 2003, Nonlocal bacterial electron transfer to hematite: Geochimica et Cosmochimica Acta, v. 67, p. 1081-1087.
68. 2 change: evaluating geochemical and paleobiological approaches: Earth-Science Reviews, v. 54, p. 349-392.
69. Scott, C. C., Lüttge, A., and Athanasiou, K. A., 2004, Development and validation of vertical scanning interferometry as a novel method for acquiring chondrocyte geometry: Journal of Biomedical Materials Research, Part A, v. 72, p. 83-90.
70. Tang, R., Nancollas, G. H., and Orme, C. A., 2001, Mechanism of dissolution of sparingly soluble electrolytes: Journal of the American Chemical Society, v. 123, p. 5437-5443.
71. Tang, R., Orme, C. A., and Nancollas, G. H., 2003, A new understanding of demineralization: The dynamics of brushite dissolution: Journal of Physical Chemistry, Part B, v. 107, p. 10653-10657.
72. Tang, R., Orme, C. A., and Nancollas, G. H., 2004, Dissolution of crystallites: Surface energetic control and size effect: ChemPhysChem, v. 5, p688-696.
73. Tossel, J. A., 1993, Theoretical studies of the speciation of Al in F-bearing aluminosilicate glasses: American Mineralogist, v. 78, p. 16-22.
74. Vinson, M. D., and Lüttge, A., 2005, Multiple Length Scale Kinetics: An integrated study of calcite dissolution rates and strontium inhibition: American Journal of Science, v. 305, p. 119-146.
75. Warren, L. A., 2004, A special issue dedicated to microbial geochemistry: Geochimica et Cosmochimica Acta, v. 68, p. 3139.
76. Wehrli, B., 1989a, Monte Carlo simulations of surface morphologies during mineral dissolution: Journal of Colloid Interface Science, v. 132, p. 230-242.
77. Wehrli, B., 1989b, Surface structure and mineral dissolution kinetics: A Monte Carlo study, in Miles, D. L., editor, Water-rock interaction: WRI-6: Proceedings of the 6th International Symposium on Water-Rock Interaction, Malvern, 3-8 August, 1989: Rotterdam, The Netherlands, A. A. Balkema, p. 751-753.
78. Westbroek, P., 1991, Life as a geological force: dynamics of the earth: New York, W.W. Norton and Co., 240 p.
79. Westrich, J. T., and Berner, R. A., 1984, The role of sedimentary organic matter in bacterial sulfate reduction: The G model tested: Limnology and Oceanography, v. 29, p. 236-249.
80. White, A. F., and Brantley, S. L., editors, 1995, Chemical weathering rates of silicate minerals: Washington, D. C., Mineralogical Society of America, Reviews in Mineralogy, v. 31, 583 p.
81. Xiao, Y., and Lüttge, A., 2002, Solvated ab initio and density functional theory (DFT) modeling of mineral-fluid surface reactions: towards a better understanding of aluminosilicate dissolution mechanisms, (abstract): GSA 2002 Fall meeting, Denver, Colorado (October 27-30, 2002).