Nondestructive methods for removal of bacteria from silicate surfaces

Geomicrobiology Journal

Volumn 20, Issue 1, 2003, Pages 25-42

  Buss, Heather L ^a   Brantley, Susan L ^a   Liermann, Laura J ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

AFM; Bacteria removal; Detergents; Etch pits; XPS

Indexed keywords

ADSORPTION; BACTERIUM; BIOMINERALIZATION; METAL; MICROBIAL ACTIVITY; SILICATE; SORPTION; SPECIATION (CHEMISTRY); WEATHERING;

BACILLUS SP.; BACTERIA (MICROORGANISMS); MICROBIOTA;

EID: 0037249663     PISSN: 01490451     EISSN: None     Source Type: Journal    
DOI: 10.1080/01490450303888     Document Type: Article

References (52)

1. Al-Hitti IK, Moody GJ. Thomas JDR. 1983. Sulphide ion-selective electrode studies concerning Desulfovibrio species of sulphate-reducing bacteria. Analyst 108:1209-1220.
2. Aronstein BN, Calvillo YM, Alexander M. 1991. Effect of surfactants at low concentrations on the desorption and biodegradation of sorbed aromatic-compounds in soil. Environ Sci Technol 25:1728-1731.
3. Backhus DA, Knowles T, Collins R, Radue A, Kim S, Picardal FW, Johnson S. 1997. Soil- and surfactant-enhanced reductive dechlorination of carbon tetrachloride in the presence of Shewanella putrefaciens 200. J Contam Hydrol 28:337-361.
4. Balaz P, Kupka D, Bastl Z, Achimovicova M. 1996. Combined chemical and bacterial leaching of ultrafine ground chalcopyrite. Hydrometallurgy 42:237-244.
5. Banat IM, Makkar RS, Camcotra SS. 2000. Potential commercial applications of microbial surfactants. Appl Microbiol Biotechnol 53:495-508.
6. Barker WW, Banfield JF. 1996. Biologically versus inorganically mediated weathering reactions: relationships between minerals and extracellular microbial polymers in lithobiontic communities. Chem Geol 132:55-69.
7. Barker WW, Welch SA, Banfield JF. 1997. Biogeochemical weathering of silicate minerals. In: Banfield JF, Nealson KH, editors. Geomicrobiology: Interactions between Microbes and Minerals, vol 35. Washington, DC: Mineral Soc Am. p 81-122.
8. Barker WW, Welch SA, Chu S, Banfield JF. 1998. Experimental observations of the effects of bacteria on aluminosilicate weathering. Amer Mineralogist 83:1551-1563.
9. Bennett PC, Hiebert FK, Choi WJ. 1996. Microbial colonization and weathering of silicates in a petroleum-contaminated groundwater. Chem Geol 132:45-53.
10. Blight K, Ralph DE, Thurgate S. 2000. Pyrite surfaces after bio-leaching: a mechanism for bio-oxidation. Hydrometallurgy 58:227-237.
11. Brantley SL, Liermann L, Bau M, Wu S. 2001. Uptake of trace metals and rare earth elements from hornblende by a soil bacterium. Geomicrobiology 18:37-61.
12. Brisou JF. 1995. Biofilms: methods for enzymatic release of microorganisms. Boca Raton: CRC Press. 204 p.
13. Cullen DW, Hirsch PR. 1998. Simple and rapid method for direct extraction of microbial DNA from soil for PCR. Soil Biol Biochem 30:983-993.
14. Digital Instruments. 1997. Dimension 3100 series scanning probe microscope instruction manual. V. 4.31ce.
15. Grantham MC, Dove PM. 1996. Investigation of bacterial-mineral interactions using Fluid Tapping Mode Atomic Force Microscopy. Geochim Cosmochim Acta 60:2473-2480.
16. Grantham MC, Dove PM, DiChristina TJ. 1997. Microbially catalyzed dissolution of iron and aluminum oxyhydroxide mineral surface coatings. Geochim Cosmochim Acta 61:4467-4477.
17. Hall GEM, Vaive JE, MacLaurin AI. 1996. Analytical aspects of the application of sodium pyrophosphate reagent in the specific extraction of the labile organic component of humus and soils. J Geochem Exploration 56:23-36.
18. Hamilton JP, Pantano CG, Brantley SL. 2000. Dissolution of albite glass and crystal. Geochim Cosmochim Acta 64:2603-2615.
19. Higashi T, Shinagawa A. 1981. Comparison of sodium hydroxide-tetraborate and sodium pyrophosphate as extractants of Al/Fe-humus 'complexes' in Dystrandepts, Japan. Geoderma 25:285-292.
20. Hilger AB, Myrold DD. 1991. Method for extraction of Frankia DNA from soil. Agriculture Ecosystem Environ 34:107-113.
21. Hills M. 1995. Carbon-dioxide jet spray cleaning of molecular contaminants. J Vac Sci Technol A 13:30-34.
22. Honess AP. 1929. The theory of crystal etching and its significance in the classification of crystals. Bulletin-PA State College Mineral Industries Experiment Station 3:1-8.
23. Howland R, Benatar L. 1996. A practical guide to scanning probe microscopy. Sunnyvale, CA: Park Scientific Instruments. 74 p.
24. Johnsson PAM. 1993. Hematite dissolution in natural organic acids. PhD Dissertation. Stanford University, Stanford, CA. 243 p.
25. Kalinowski BE, Liermann LJ, Brantley SL, Barnes A, Pantano CG. 2000. X-ray photoelectron evidence for bacteria-enhanced dissolution of hornblende. Geochim Cosmochim Acta 64:1331-1343.
26. Lasaga AC, Blum AE. 1986. Surface chemistry, etch pits and mineral-water reactions. Geochim Cosmochim Acta 50:2363-2379.
27. Lee RM, Hartman PA, Olson DG, Williams FD. 1994. Bactericidal and bacteriaolytic effects of selected food-grade phosphates, using Staphylococcus Aureus as a model system. J Food Protection 57:276-283.
28. Liermann LJ, Kalinowski BE, Brantley SL, Ferry JG. 2000a. Role of bacterial siderophores in dissolution of hornblende. Geochim Cosmochim Acta 64:587-602.
29. Liermann LJ, Barnes AS, Kalinowski BE, Zhou X, Brantley SL 2000b. Microenvironments of pH in biofilms grown on dissolving silicate surfaces. Chem Geol 171:1-16.
30. MacInnis IN, Brantley SL. 1993. Development of etch pit size distributions on dissolving minerals. Chem Geol 105:31-49.
31. Madigan MT, Martinko JM, Parker J. 2000. Brock biology of microorganisms. Englewood Cliffs, NJ: Prentice Hall. 991 p.
32. Marshall SJ, House WA, White GF. 2000. Role of natural organic matter in accelerating bacterial biodegradation of sodium dodecyl sulfate in rivers. Environ Sci Technol 34:2237-2242.
33. Maurice P, Forsythe J. 1997. Aerobic bacterial interactions with hydrous Fe(III) oxides: attachment features observed using atomic-force microscopy. GSA Abstracts with Programs 29:295.
34. Maurice P, Forsythe J, Hersman L, Sposito G. 1996. Application of atomic-force microscopy to studies of microbial interactions with hydrous Fe(III)-oxides. Chem Geol 132:33-43.
35. Maurice PA, Hochella Jr MF, Parks GA, Sposito GS, Schwertmann U. 1995. Evolution of hematite surface microtopography upon dissolution by simple organic acids. Clays Clay Min 43:29-38.
36. Maurice PA, McKnight DM, Leff L, Fulghum JE, Gooseff M. 2001. Direct observations of aluminosilicate weathering in the hyphoreic zone of an Antarctic dry valley stream. Geochim Cosmochim Acta 66: 1335-1347.
37. Mellott NP, Brantley SL, Pantano CG. 2001. Topography of polished plates of albite crystal and glass during dissolution. Memorial Volume of the Geochemical Society in Honor of David A. Crerar, Special Pub. No. 7:1-13.
38. Omueti JAI, Lavkulich LM. 1988. Identification of clay minerals in soil: the effect of sodium-pyrophosphate. Soil Sci Soc Am J 52:285-287.
39. Rogers JR, Bennett PC, Choi WJ. 1998. Feldspars as a source of nutrients for microorganisms. Amer Mineralogist 83:1532-1540.
40. Ruppe C, Duparee A. 1996. Roughness analysis of optical films and substrates by atomic force microscopy. Thin Solid Films 288:8-13.
41. Sherman R, Adams P. 1996. Carbon dioxide snow cleaning-the next generation of clean. Precision Cleaning 1996 Proceedings 290-299.
42. 2 snow. J Vac Sci Tech B 9:1970-1977.
43. Sherman R, Hirt D, Vane R. 1994. Surface cleaning with the carbon-dioxide snow jet. J Vac Sci Tech A 12:1876-1881.
44. Sneath PHA. 1986. Endospore-forming gram-positive rods and cocci. In: Holt JG, Sneath PHA, Mair NS, Sharpe ME, editors. Bergey's Manual of Systematic Bacteriology, vol 2. Baltimore, MD: Williams and Wilkins. p 1104-1133.
45. Stevenson FJ. 1982. Humus Chemistry; Genesis, Composition, Reactions. New York: Wiley. 433 p.
46. Stone AT. 1997. Reactions of extracellular organic ligands with dissolved metal ions and mineral surfaces. In: Banfield JF, Nealson KH, editors. Geomicrobiology: Interactions between Microbes and Minerals, vol 35. Washington, DC: Mineral. Soc. Am. p 309-344.
47. Suhr NH, Ingamells CO. 1966. Solution technique for analysis of silicates. Anal Chem 38:730-734.
48. Thorseth IH, Furnes H, Tumyr O. 1995. Textural and chemical effects of bacterial activity on basaltic glass: an experimental approach. Chem Geol 119:139-160.
49. Vig JR. 1992. Ultraviolet-ozone cleaning of semiconductor surfaces. Research and Development Technical Report Number SLCET-TR-91-33 (Rev 1). Army Research Laboratory, Electronics and Power Sources Directorate, Fort Monmouth, NJ.
50. Wolin EA, Wolin MJ, Wolfe RS. 1963. Formation of methane by bacterial extracts. J Biol Chem 238:2882-2886.
51. Yuan G, Lavkulich LM, Wang C. 1993. A method for estimating organic-bound iron and aluminum contents in soils. Comm Soil Sci Plant Anal 24:1333-1343.
52. Zazzera L, Evans JF. 1993. In situ internal reflection infrared study of aqueous hydroflouric acid and ultraviolet/ozone treated silicon (100) surfaces. J Vac Sci Tech A 11:4934-4939.