Analysis of genetic diversity and relationships in waxy rice (Oryza sativa L.) using AFLP and ISSR markers

Genetic Resources and Crop Evolution

Volumn 53, Issue 2, 2006, Pages 323-330

  Bao, Jinsong ^a,b   Corke, Harold ^b   Sun, Mei ^b  

^a ZHEJIANG UNIVERSITY   (China)

^b UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

AFLP; Genetic diversity; ISSR; Starch quality; Waxy rice

Indexed keywords

GENETIC VARIATION; GERMPLASM; RICE;

JAPONICA; ORYZA SATIVA;

EID: 32544449608     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-004-6145-6     Document Type: Article

References (22)

1. I. Ashikawa Y. Fukuta K. Tamura T. Yagi 1999 Application of AFLP technique that uses non-radioactive fluorescent primers to the detection of genetic diversity in Japanese rice cultivars and cloning of DNA sequences derived from an indica genome Breed. Sci. 49 225 231
2. J.S. Bao H. Corke M. Sun 2002 Microsatellites in starch-synthesizing genes in relation to starch physicochemical properties in waxy rice (Oryza sativa L.) Theor. Appl. Genet. 105 898 905
3. J.S. Bao H. Corke M. Sun 2004 Genetic diversity in the physiochemical properties of waxy rice (Oryza sativa L.) starch J. Sci. Food Agric. 84 1299 1306
4. M.W. Blair O. Panaud S.R. [tmp] McCouch 1999 Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.) Theor. Appl. Genet. 98 780 792
5. Y.G. Cho M.W. Blair O. Panaud S.R. [tmp] McCouch 1996 Cloning and mapping of variety-specific rice genomic DNA sequences: Amplified fragment length polymorphisms (AFLP) from silver-stained polyacrylamide gels Genome 39 373 378
6. J.J. Doyle 1991 DNA protocols for plants-CTAB total DNA isolation G.M. Hewitt Molecular Techniques in Taxonomy Springer Berlin 283 293
7. J.L. Fuentes F. Escobar A. Alvarez G. Gallego M.C. Duque M. Ferrer J.E. Deus J.M. Tohme 1999 Analysis of genetic diversity in Cuban rice varieties using isozyme, RAPD and AFLP markers Euphytica 109 107 115
8. J.C. Huang M. Sun 1999 A modified AFLP with fluorescein-labeled primers and automated DNA sequencer detection for efficient fingerprinting analysis in plants Biotechnol. Tech. 13 277 278
9. J.C. Huang M. Sun 2000 Fluorescein PAGE analysis of microsatellite-primed PCR: a fast and efficient approach for genomic fingerprinting Bio. Tech. 28 1068 1072
10. T. Inukai A. Sako H. Hirano Y. Sano 2000 Analysis of intragenic recombination at wx in rice: correlation between the molecular and genetic maps within the locus Genome 43 589 596
11. B.O. Juliano R.M. Villareal 1987 Varietal differences in physicochemical properties of waxy rice starch Starch/Staerke 39 298 301
12. N.A. Mantel 1967 The detection of disease clustering and a generalized regression approach Cancer Res. 27 209 220
13. M. Nei W.H. Li 1979 Mathematical model for studying genetic variation in terms of restriction endonucleases Proc. Natl Acad. Sci. USA 76 5269 5273
14. W. Qian S. Ge D.Y. Hong 2001 Genetic variation within and among populations of a wild rice Oryza granulata from China detected by RAPD and ISSR markers Theor. Appl. Genet. 102 440 449
15. D.L. Swofford 1998 PAUP*4.0 - Phylogenetic Analysis Using Parsimony (*and Other Methods) Sinauer Assoc. Sunderland, MA
16. C.P. Villareal B.O. Juliano S. Hizukuri 1993 Varietal differences in amylopectin staling of cooked waxy milled rices Cereal Chem. 70 753 758
17. P. Vos R. Hogers M. Bleeker M. Reijans T. Van De Lee M. Hornes A. Frijters J. Pot J. Peleman M. Kuiper M. Zabeau 1995 AFLP: a new technique for DNA fingerprinting Nucleic Acid Res. 23 4407 4414
18. J.Z. Wang X.S. Xie M.F. Liu 1999 A brief introduction of waxy rice germplasm in Shaoxing for brewing purpose Crop Germplasm. 3 18 19 (in Chinese)
19. Ying C.S. (ed) 1993. Rice Germplasm Resources in China. Chinese Agricultural Science Press, Beijng (in Chinese).
20. Zhang M.W. (ed) 2000. Special Rice and its Processing Techniques. China Light Industry Press, pp. 1-27 (in Chinese).
21. J. Zhu M.D. Gale S. Quarrie M.T. Jackson G.J. Bryan 1998 AFLP markers for study of rice biodiversity Theor. Appl. Genet. 96 602 611
22. E. Zietkiewicz A. Rafalski D. Labuda 1994 Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplication Genomics 20 176 183