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Volumn 171, Issue 3, 2005, Pages 1321-1330

The impact of using related individuals for haplotype reconstruction in population studies

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; EMPIRICISM; FAMILY; GENE FREQUENCY; HAPLOTYPE; INDIVIDUALIZATION; PARENT; PEDIGREE; POPULATION RESEARCH; PRIORITY JOURNAL; SIBLING; SIMULATION;

EID: 32544448163     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.105.042762     Document Type: Article
Times cited : (7)

References (26)
  • 1
    • 0036445068 scopus 로고    scopus 로고
    • Efficiency of haplotype frequency estimation when nuclear family information is included
    • BECKER, T., and M. KNAPP, 2002 Efficiency of haplotype frequency estimation when nuclear family information is included. Hum. Hered. 54: 45-53.
    • (2002) Hum. Hered. , vol.54 , pp. 45-53
    • Becker, T.1    Knapp, M.2
  • 2
    • 0015183542 scopus 로고
    • A general model for the genetic analysis of pedigree data
    • ELSTON, R., and J. STEWART, 1971 A general model for the genetic analysis of pedigree data. Hum. Hered. 21: 523-542.
    • (1971) Hum. Hered. , vol.21 , pp. 523-542
    • Elston, R.1    Stewart, J.2
  • 3
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • EXCOFFIER, L., and M. SLATKIN, 1995 Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol. 12: 921-927.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 4
    • 0033794938 scopus 로고    scopus 로고
    • Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
    • FALLIN, D., and N. SHORCK, 2000 Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data. Am. J. Hum. Genet. 67: 947-959.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 947-959
    • Fallin, D.1    Shorck, N.2
  • 5
    • 0035154452 scopus 로고    scopus 로고
    • Genetic analysis of case/control data using haplotype frequencies: Application to APOE locus variation and Alzheimer's disease
    • FALLIN, D., A. COHEN, L. ESSIOUX, I. CHUMAKOV, M. BLUMENFELD et al., 2001 Genetic analysis of case/control data using haplotype frequencies: application to APOE locus variation and Alzheimer's disease. Genet. Res. 11: 143-151.
    • (2001) Genet. Res. , vol.11 , pp. 143-151
    • Fallin, D.1    Cohen, A.2    Essioux, L.3    Chumakov, I.4    Blumenfeld, M.5
  • 6
    • 1942453327 scopus 로고    scopus 로고
    • Comparing linkage disequilibrium-based methods for fine mapping of quantitative trait loci
    • GRAPES, L., J. DEKKERS, M. ROTHSCHILD and R. FERNANDO, 2004 Comparing linkage disequilibrium-based methods for fine mapping of quantitative trait loci. Genetics 166: 1561-1570.
    • (2004) Genetics , vol.166 , pp. 1561-1570
    • Grapes, L.1    Dekkers, J.2    Rothschild, M.3    Fernando, R.4
  • 7
    • 0029372419 scopus 로고
    • HAPLO: A program using the EM algorithm to estimate the frequencies of multi-site haplotypes
    • HAWLEY, M., and K. KIDD, 1995 HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes. J. Hered. 86: 409-411.
    • (1995) J. Hered. , vol.86 , pp. 409-411
    • Hawley, M.1    Kidd, K.2
  • 8
    • 0016319012 scopus 로고
    • Estimation of linkage disequilibrium in randomly mating populations
    • HILL, W. G., 1974 Estimation of linkage disequilibrium in randomly mating populations. Heredity 33: 229-239.
    • (1974) Heredity , vol.33 , pp. 229-239
    • Hill, W.G.1
  • 9
    • 0034918099 scopus 로고    scopus 로고
    • Unusual haplotypic structure of IL8, a susceptibility locus for a common respiratory virus
    • HULL, J., H. ACKERMAN, K. ISLES, S. USEN, M. PINDER et al., 2001 Unusual haplotypic structure of IL8, a susceptibility locus for a common respiratory virus. Am. J. Hum. Genet. 69: 413-419.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 413-419
    • Hull, J.1    Ackerman, H.2    Isles, K.3    Usen, S.4    Pinder, M.5
  • 10
    • 0036801154 scopus 로고    scopus 로고
    • The impact of genotyping error on haplotype reconstruction and frequency estimation
    • KIRK, K. M., and L. R. CARDON, 2002 The impact of genotyping error on haplotype reconstruction and frequency estimation. Eur. J. Hum. Genet. 10: 616-622.
    • (2002) Eur. J. Hum. Genet. , vol.10 , pp. 616-622
    • Kirk, K.M.1    Cardon, L.R.2
  • 11
    • 1442338504 scopus 로고    scopus 로고
    • The efficiency of designs for fine-mapping of quantitative trait loci using combined linkage disequilibrium and linkage
    • LEE, S. H., and J. H. VAN DER WERF, 2004 The efficiency of designs for fine-mapping of quantitative trait loci using combined linkage disequilibrium and linkage. Genet. Sel. Evol. 36: 145-160.
    • (2004) Genet. Sel. Evol. , vol.36 , pp. 145-160
    • Lee, S.H.1    Van Der Werf, J.H.2
  • 12
    • 0036259757 scopus 로고    scopus 로고
    • Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping
    • MEUWISSEN, T. H. E., A. KARLSEN, S. LIEN, I. OLSAKER and M. E. GODDARD, 2002 Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping. Genetics 161: 373-379.
    • (2002) Genetics , vol.161 , pp. 373-379
    • Meuwissen, T.H.E.1    Karlsen, A.2    Lien, S.3    Olsaker, I.4    Goddard, M.E.5
  • 13
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
    • MORRIS, A., J. WHITTAKER and D. BALDING, 2002 Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Am. J. Hum. Genet. 70: 686-707.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 686-707
    • Morris, A.1    Whittaker, J.2    Balding, D.3
  • 14
    • 2342642816 scopus 로고    scopus 로고
    • Little loss of information due to unknown phase for fine-scale linkage-disequilibirium with single-nucleotide-polymorphism genotype data
    • MORRIS, A., J. WHITTAKER and D. BALDING, 2004 Little loss of information due to unknown phase for fine-scale linkage-disequilibirium with single-nucleotide-polymorphism genotype data. Am. J. Hum. Genet. 74: 945-953.
    • (2004) Am. J. Hum. Genet. , vol.74 , pp. 945-953
    • Morris, A.1    Whittaker, J.2    Balding, D.3
  • 15
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
    • NIU, T., Z. S. QIN, X. XU and J. S. LIU, 2002 Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am. J. Hum. Genet. 70: 157-169.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 16
    • 0033814569 scopus 로고    scopus 로고
    • Zero-recombinant haplotyping: Applications to fine mapping using SNPs
    • O'CONNELL, J. R., 2000 Zero-recombinant haplotyping: applications to fine mapping using SNPs. Genet. Epidemiol. 19: S582-S587.
    • (2000) Genet. Epidemiol. , vol.19
    • O'Connell, J.R.1
  • 17
    • 0024602536 scopus 로고
    • Estimating the power of a proposed linkage study for a complex genetic trait
    • PLOUGHMAN, L. M., and M. BOEHNKE, 1989 Estimating the power of a proposed linkage study for a complex genetic trait. Am. J. Hum. Genet. 44: 543-551.
    • (1989) Am. J. Hum. Genet. , vol.44 , pp. 543-551
    • Ploughman, L.M.1    Boehnke, M.2
  • 18
    • 0036844521 scopus 로고    scopus 로고
    • Partial-ligation-expectation-maximization for haplotype inference with single nucleotide polymorphisms
    • QIN, Z. S., T. NIU and J. S. LIU, 2002 Partial-ligation-expectation- maximization for haplotype inference with single nucleotide polymorphisms. Am. J. Hum. Genet. 71: 1242-1247.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 1242-1247
    • Qin, Z.S.1    Niu, T.2    Liu, J.S.3
  • 19
    • 0035065489 scopus 로고    scopus 로고
    • Haplotyping and estimation of haplotype frequencies for closely linked biallelic multilocus genetic phenotypes including nuclear family information
    • ROHDE, K., and R. FUERST, 2001 Haplotyping and estimation of haplotype frequencies for closely linked biallelic multilocus genetic phenotypes including nuclear family information. Hum. Mutat. 17: 289-295.
    • (2001) Hum. Mutat. , vol.17 , pp. 289-295
    • Rohde, K.1    Fuerst, R.2
  • 20
    • 0036858594 scopus 로고    scopus 로고
    • Relative efficiency of ambiguous vs. directly measured haplotype frequencies
    • SCHAID, D. J., 2002 Relative efficiency of ambiguous vs. directly measured haplotype frequencies. Genet. Epidemiol. 23: 426-443.
    • (2002) Genet. Epidemiol. , vol.23 , pp. 426-443
    • Schaid, D.J.1
  • 21
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of Bayesian methods for haplotype reconstruction from population genotype data
    • STEPHENS, M., and P. DONNELLY, 2003 A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 73: 1162-1169.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 22
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • STEPHENS, M., N. J. SMITH and P. DONNELLY, 2001 A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68: 978-989.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 24
    • 0036331079 scopus 로고    scopus 로고
    • Sibship reconstruction in hierarchical population structures using Markov chain Monte Carlo techniques
    • THOMAS, S. C., and W. G. HILL, 2002 Sibship reconstruction in hierarchical population structures using Markov chain Monte Carlo techniques. Genet. Res. 79: 227-234.
    • (2002) Genet. Res. , vol.79 , pp. 227-234
    • Thomas, S.C.1    Hill, W.G.2
  • 25
    • 0037340445 scopus 로고    scopus 로고
    • Haplotype analysis in population genetics and association studies
    • ZHAO, H., R. PFEIFFER and M. H. GAIL, 2003 Haplotype analysis in population genetics and association studies. Pharmacogenomics 4: 171-178.
    • (2003) Pharmacogenomics , vol.4 , pp. 171-178
    • Zhao, H.1    Pfeiffer, R.2    Gail, M.H.3
  • 26
    • 0033990339 scopus 로고    scopus 로고
    • Model-free analysis and permutation tests for allelic associations
    • ZHAO, J. H., D. CURTIS and P. C. SHAM, 2000 Model-free analysis and permutation tests for allelic associations. Hum. Hered. 50: 133-139.
    • (2000) Hum. Hered. , vol.50 , pp. 133-139
    • Zhao, J.H.1    Curtis, D.2    Sham, P.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.