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Volumn 14, Issue 3, 2004, Pages 451-458

Eukaryotic regulatory element conservation analysis and identification using comparative genomics

Author keywords

[No Author keywords available]

Indexed keywords

CD28 ANTIGEN; DNA; MYOCYTE ENHANCER FACTOR 2; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR MYF; TRANSCRIPTION FACTOR NFAT; TRANSCRIPTION FACTOR SP1; TRANSCRIPTION FACTOR SRF; UNCLASSIFIED DRUG;

EID: 1542376789     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.1327604     Document Type: Article
Times cited : (118)

References (32)
  • 2
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T.L. and Elkan, C. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2: 28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 3
    • 0036107903 scopus 로고    scopus 로고
    • Discovery of regulatory elements by a computational method for phylogenetic footprinting
    • Blanchette, M. and Tompa, M. 2002. Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Res. 12: 739-748.
    • (2002) Genome Res. , vol.12 , pp. 739-748
    • Blanchette, M.1    Tompa, M.2
  • 8
    • 0031789944 scopus 로고    scopus 로고
    • Regulation of touch receptor differentiation by the Caenorhabditis elegans Mec-3 and Unc-86 genes
    • Duggan, A., Ma, C., and Chalfie, M. 1998. Regulation of touch receptor differentiation by the Caenorhabditis elegans Mec-3 and Unc-86 genes. Development 125:4107-4119.
    • (1998) Development , vol.125 , pp. 4107-4119
    • Duggan, A.1    Ma, C.2    Chalfie, M.3
  • 10
    • 0036468361 scopus 로고    scopus 로고
    • Regulation of organogenesis by the Caenorhabditis elegans Foxa protein Pha-4
    • Gaudet, J. and Mango, S.E. 2002. Regulation of organogenesis by the Caenorhabditis elegans Foxa protein Pha-4. Science 295: 821-825.
    • (2002) Science , vol.295 , pp. 821-825
    • Gaudet, J.1    Mango, S.E.2
  • 11
    • 0034284481 scopus 로고    scopus 로고
    • Conserved noncoding sequences are reliable guides to regulatory elements
    • Hardison, R.C. 2000. Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet. 16: 369-372.
    • (2000) Trends Genet. , vol.16 , pp. 369-372
    • Hardison, R.C.1
  • 12
    • 0025372992 scopus 로고
    • Identification of consensus patterns in unaligned DNA sequences known to be functionally related
    • Hertz, G.Z., Hartzell III, G.W., and Stormo, G.D. 1990. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Comput. Appl. Biosci. 6: 81-92.
    • (1990) Comput. Appl. Biosci. , vol.6 , pp. 81-92
    • Hertz, G.Z.1    Hartzell III, G.W.2    Stormo, G.D.3
  • 13
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • Kellis, M., Patterson, N., Endrizzi, M., Birren, B., and Lander, E.S. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423: 241-254.
    • (2003) Nature , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 14
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent, W.J. 2002. BLAT - The BLAST-like alignment tool. Genome Res. 12: 656-664.
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 15
    • 0033832676 scopus 로고    scopus 로고
    • Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment
    • Kent, W.J. and Zahler, A.M. 2000. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res. 10:1115-1125.
    • (2000) Genome Res. , vol.10 , pp. 1115-1125
    • Kent, W.J.1    Zahler, A.M.2
  • 16
    • 84950424966 scopus 로고
    • Bayesian Models for multiple local sequence alignment and Gibbs sampling strategies
    • Liu, J.S., Neuwald, A.F., and Lawrence, C.E. 1995. Bayesian Models for multiple local sequence alignment and Gibbs sampling strategies. J. Am. Stat. Assoc. 90: 1156-1170.
    • (1995) J. Am. Stat. Assoc. , vol.90 , pp. 1156-1170
    • Liu, J.S.1    Neuwald, A.F.2    Lawrence, C.E.3
  • 17
    • 0035228215 scopus 로고    scopus 로고
    • Bioprospector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    • Liu, X., Brutlag, D.L., and Liu, J.S. 2001. Bioprospector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac. Symp. Biocomput. 127-138.
    • (2001) Pac. Symp. Biocomput. , pp. 127-138
    • Liu, X.1    Brutlag, D.L.2    Liu, J.S.3
  • 19
    • 0033918228 scopus 로고    scopus 로고
    • Conservation of DNA regulatory motifs and discovery of new motifs in microbial genomes
    • McGuire, A.M., Hughes, J.D., and Church, G.M. 2000. Conservation of DNA regulatory motifs and discovery of new motifs in microbial genomes. Genome Res. 10: 744-757.
    • (2000) Genome Res. , vol.10 , pp. 744-757
    • McGuire, A.M.1    Hughes, J.D.2    Church, G.M.3
  • 20
    • 0028353904 scopus 로고
    • The DNA-binding specificity of the hepatocyte nuclear factor 3/Forkhead domain is influenced by amino-acid residues adjacent to the recognition helix
    • Overdier, D.G., Porcella, A., and Costa, R.H. 1994. The DNA-binding specificity of the hepatocyte nuclear factor 3/Forkhead domain is influenced by amino-acid residues adjacent to the recognition helix. Mol. Cell. Biol. 14: 2755-2766.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 2755-2766
    • Overdier, D.G.1    Porcella, A.2    Costa, R.H.3
  • 21
    • 0035261381 scopus 로고    scopus 로고
    • Genomic strategies to identify mammalian regulatory sequences
    • Pennacchio, L.A. and Rubin, E.M. 2001. Genomic strategies to identify mammalian regulatory sequences. Nat. Rev. Genet. 2: 100-109.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 100-109
    • Pennacchio, L.A.1    Rubin, E.M.2
  • 22
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • Pruitt, K.D. and Maglott, D.R. 2001. RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res. 29: 137-140.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 23
    • 12244259677 scopus 로고    scopus 로고
    • Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites
    • Qin, Z.S., McCue, L.A., Thompson, W., Mayerhofer, L., Lawrence, C.E., and Liu, J.S. 2003. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Nat. Biotechnol. 21: 435-439.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 435-439
    • Qin, Z.S.1    McCue, L.A.2    Thompson, W.3    Mayerhofer, L.4    Lawrence, C.E.5    Liu, J.S.6
  • 24
    • 0030973579 scopus 로고    scopus 로고
    • Transcription factors of the NFAT family: Regulation and function
    • Rao, A., Luo, C., and Hogan, P.G. 1997. Transcription factors of the NFAT family: Regulation and function. Annu. Rev. Immunol. 15: 707-747.
    • (1997) Annu. Rev. Immunol. , vol.15 , pp. 707-747
    • Rao, A.1    Luo, C.2    Hogan, P.G.3
  • 25
    • 0031787969 scopus 로고    scopus 로고
    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • Roth, F.P., Hughes, J.D., Estep, P.W., and Church, G.M. 1998. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol. 16: 939-945.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 939-945
    • Roth, F.P.1    Hughes, J.D.2    Estep, P.W.3    Church, G.M.4
  • 31
    • 0027100450 scopus 로고
    • Regulation of the Mec-3 gene by the C. elegans homeoproteins Unc-86 and Mec-3
    • Xue, D., Finney, M., Ruvkun, G., and Chalfie, M. 1992. Regulation of the Mec-3 gene by the C. elegans homeoproteins Unc-86 and Mec-3. EMBO J. 11: 4969-4979.
    • (1992) EMBO J. , vol.11 , pp. 4969-4979
    • Xue, D.1    Finney, M.2    Ruvkun, G.3    Chalfie, M.4
  • 32
    • 0032861774 scopus 로고    scopus 로고
    • SCPD: A promoter database of the yeast Saccharomyces cerevisiae
    • Zhu, J. and Zhang, M.Q. 1999. SCPD: A promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics 15: 607-611.
    • (1999) Bioinformatics , vol.15 , pp. 607-611
    • Zhu, J.1    Zhang, M.Q.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.