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Volumn 68, Issue , 2003, Pages 227-235

Ontologies for biologists: A community model for the annotation of genomic data

Author keywords

[No Author keywords available]

Indexed keywords

CONFERENCE PAPER; DATA BASE; GENE MAPPING; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC CODE; GENOMICS; INFORMATION SYSTEM; PRIORITY JOURNAL; ARTICLE; BIOINFORMATICS; BIOLOGICAL ONTOLOGY; BIOSYNTHESIS; CHROMOSOME MUTATION; COMMUNITY; GENE ONTOLOGY; GENE PRODUCT; GENETIC DATABASE; HUMAN; LOGIC; MOLECULAR BIOLOGY; MOLECULAR GENETICS; NONHUMAN; PROTEIN DATABASE; PROTEIN PROCESSING;

EID: 3242704870     PISSN: 00917451     EISSN: None     Source Type: Book Series    
DOI: 10.1101/sqb.2003.68.227     Document Type: Conference Paper
Times cited : (27)

References (49)
  • 3
    • 0035459721 scopus 로고    scopus 로고
    • Ontologies of developmental anatomy: Their current and future roles
    • Bard J. and Winter R. 2001. Ontologies of developmental anatomy: Their current and future roles. Brief. Bioinform. 2: 289.
    • (2001) Brief. Bioinform. , vol.2 , pp. 289
    • Bard, J.1    Winter, R.2
  • 5
    • 0009007635 scopus 로고
    • Computation of Fourier syntheses with a digital electronic calculating machine
    • Bennett J.M. and Kendrew J.C. 1952. Computation of Fourier syntheses with a digital electronic calculating machine. Acta Crystallogr. 5: 109.
    • (1952) Acta Crystallogr. , vol.5 , pp. 109
    • Bennett, J.M.1    Kendrew, J.C.2
  • 6
    • 0242585492 scopus 로고    scopus 로고
    • GoFish finds genes with combinations of Gene Ontology attributes
    • Berriz G.F., White J.V., King O.D., and Roth, F.P. 2003. GoFish finds genes with combinations of Gene Ontology attributes. Bioinformatics 19: 788.
    • (2003) Bioinformatics , vol.19 , pp. 788
    • Berriz, G.F.1    White, J.V.2    King, O.D.3    Roth, F.P.4
  • 7
    • 0020832319 scopus 로고
    • What ISA-A is and isn't: An analysis of links in semantic networks
    • Brachman R.J. 1983. What ISA-A is and isn't: An analysis of links in semantic networks. Computer 16: 30.
    • (1983) Computer , vol.16 , pp. 30
    • Brachman, R.J.1
  • 9
    • 0029436725 scopus 로고
    • Challenges in integrating biological data sources
    • Davidson S.B., Overton C., and Buneman P. 1995. Challenges in integrating biological data sources. J. Comput. Biol. 2: 557.
    • (1995) J. Comput. Biol. , vol.2 , pp. 557
    • Davidson, S.B.1    Overton, C.2    Buneman, P.3
  • 13
    • 0028457443 scopus 로고
    • Restructuring the genome data base: A model for a federation of biological databases
    • Fasman K. 1994. Restructuring the genome data base: A model for a federation of biological databases. J. Comput. Biol. 1: 165.
    • (1994) J. Comput. Biol. , vol.1 , pp. 165
    • Fasman, K.1
  • 15
    • 12244283680 scopus 로고    scopus 로고
    • Modeling the percolation of annotation errors in a database of protein sequences
    • Gilks W.R., Audit B., De Angelis D., Tsoka S., and Ouzounis C.A. 2002. Modeling the percolation of annotation errors in a database of protein sequences. Bioinformatics 18: 1641.
    • (2002) Bioinformatics , vol.18 , pp. 1641
    • Gilks, W.R.1    Audit, B.2    De Angelis, D.3    Tsoka, S.4    Ouzounis, C.A.5
  • 18
    • 0036907158 scopus 로고    scopus 로고
    • Extension and integration of the gene ontology (GO): Combining GO vocabularies with external vocabularies
    • Hill D.P., Blake J.A., Richardson J.E., and Ringwald M. 2002. Extension and integration of the gene ontology (GO): Combining GO vocabularies with external vocabularies. Genome Res. 12: 1982.
    • (2002) Genome Res. , vol.12 , pp. 1982
    • Hill, D.P.1    Blake, J.A.2    Richardson, J.E.3    Ringwald, M.4
  • 19
    • 3943106585 scopus 로고    scopus 로고
    • Accomplishments and challenges in literature data mining for biology
    • Hirschman L., Park J.C., Tsujii, J., Wong L., and Wu C.H. 2002. Accomplishments and challenges in literature data mining for biology. Bioinformatics 18: 1553.
    • (2002) Bioinformatics , vol.18 , pp. 1553
    • Hirschman, L.1    Park, J.C.2    Tsujii, J.3    Wong, L.4    Wu, C.H.5
  • 20
    • 3242693723 scopus 로고
    • An early adventure in crystallographic computing
    • (ed. J.M. Thomas and D. Phillips). Science Reviews, Northwood, United Kingdom
    • Huxley H.E. 1990. An early adventure in crystallographic computing. In Selections and reflections: The legacy of Sir L. Bragg (ed. J.M. Thomas and D. Phillips), p. 133. Science Reviews, Northwood, United Kingdom.
    • (1990) Selections and Reflections: The Legacy of Sir L. Bragg , pp. 133
    • Huxley, H.E.1
  • 22
    • 0037460964 scopus 로고    scopus 로고
    • Prediction of human protein function according to Gene Ontology categories
    • Jensen L.J., Gupta R., Staerfeldt H.H., and Brunak S. 2003. Prediction of human protein function according to Gene Ontology categories. Bioinformatics 19: 635.
    • (2003) Bioinformatics , vol.19 , pp. 635
    • Jensen, L.J.1    Gupta, R.2    Staerfeldt, H.H.3    Brunak, S.4
  • 23
    • 0035042776 scopus 로고    scopus 로고
    • A literature network of human genes for high-throughput analysis of gene expression
    • Jenssen T.K., Laegreid A., Komorowski J., and Hovig E. 2001. A literature network of human genes for high-throughput analysis of gene expression. Nat. Genet. 28: 21.
    • (2001) Nat. Genet. , vol.28 , pp. 21
    • Jenssen, T.K.1    Laegreid, A.2    Komorowski, J.3    Hovig, E.4
  • 27
    • 0038781869 scopus 로고    scopus 로고
    • Predicting gene ontology biological process from temporal gene expression patterns
    • Lagreid A., Hvidsten T.R., Midelfart H., Komorowski J., and Sandvik A.K. 2003. Predicting gene ontology biological process from temporal gene expression patterns. Genome Res. 13: 965.
    • (2003) Genome Res. , vol.13 , pp. 965
    • Lagreid, A.1    Hvidsten, T.R.2    Midelfart, H.3    Komorowski, J.4    Sandvik, A.K.5
  • 31
    • 0012395322 scopus 로고    scopus 로고
    • Nouns in WordNet
    • (ed. C. Fellbaum), ch. 1. MIT Press, Cambridge, Massachusetts
    • Miller G.A. 1998. Nouns in WordNet. In WordNet. An electronic lexical database (ed. C. Fellbaum), ch. 1. MIT Press, Cambridge, Massachusetts.
    • (1998) WordNet. An Electronic Lexical Database
    • Miller, G.A.1
  • 32
    • 3242671030 scopus 로고    scopus 로고
    • MIPS (Munich Information Center for Protein Sequences). 2003. Comprehensive yeast genome database (http://mips.gsf.de/proj/yeast/CYGD/db/ index.html).
    • (2003) Comprehensive Yeast Genome Database
  • 33
    • 3242738780 scopus 로고    scopus 로고
    • obo (Open Biological Ontologies). 2003. (http://obo.sf.net/).
    • (2003)
  • 35
    • 0034756358 scopus 로고    scopus 로고
    • DIAN: A novel algorithm for genome ontological classification
    • Pouliot Y., Gao J., Su Q.J., Liu G.G., and Ling X.B. 2001. DIAN: A novel algorithm for genome ontological classification. Genome Res. 11: 1766.
    • (2001) Genome Res. , vol.11 , pp. 1766
    • Pouliot, Y.1    Gao, J.2    Su, Q.J.3    Liu, G.G.4    Ling, X.B.5
  • 36
    • 0036144742 scopus 로고    scopus 로고
    • Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature
    • Raychaudhuri S., Chang J.T., Sutphin P.D., and Altman R.B. 2002. Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature. Genome Res. 12: 203.
    • (2002) Genome Res. , vol.12 , pp. 203
    • Raychaudhuri, S.1    Chang, J.T.2    Sutphin, P.D.3    Altman, R.B.4
  • 37
    • 3242713563 scopus 로고    scopus 로고
    • ReelTwo. 2003. (http:/www.reeltwo.com/).
    • (2003)
  • 38
    • 0002408913 scopus 로고
    • The integrated genomic database
    • (ed. S. Suhai). Plenum Press, New York
    • Ritter O. 1994. The integrated genomic database. In Computational methods in genome research (ed. S. Suhai), p. 57. Plenum Press, New York.
    • (1994) Computational Methods in Genome Research , pp. 57
    • Ritter, O.1
  • 40
    • 3242690998 scopus 로고    scopus 로고
    • Linking biomedical language information and knowledge resources in the 21st century: GO and UMLS
    • Sarkar I.N., Cantor M.N., Gelman R., Hartel F., and Lussier Y.A. 2003. Linking biomedical language information and knowledge resources in the 21st century: GO and UMLS. Pac. Symp. Biocomput. 8: 427.
    • (2003) Pac. Symp. Biocomput. , vol.8 , pp. 427
    • Sarkar, I.N.1    Cantor, M.N.2    Gelman, R.3    Hartel, F.4    Lussier, Y.A.5
  • 42
    • 3242671029 scopus 로고    scopus 로고
    • Semantic Web. 2003. (http://www.w3.org/2001/sw/).
    • (2003)
  • 43
    • 3242712617 scopus 로고    scopus 로고
    • SONG (Sequence Ontology Project). 2003. (http://song.sf.net/).
    • (2003)
  • 44
    • 0019193278 scopus 로고
    • A new computer method for the storage and manipulation of DNA gel reading data
    • Staden R. 1980. A new computer method for the storage and manipulation of DNA gel reading data. Nucleic Acids Res. 8: 3673.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 3673
    • Staden, R.1
  • 45
    • 3242718136 scopus 로고    scopus 로고
    • UMLS (Unified Medical Language System). 2003. (http://www.nlm.nih.gov/ research/umls/).
    • (2003)
  • 48
    • 0041627697 scopus 로고    scopus 로고
    • A methodology to migrate the gene ontology to a description logic environment using DAML+OIL
    • Wroe C.J., Stevens R., Goble C.A., and Ashburner M. 2003. A methodology to migrate the gene ontology to a description logic environment using DAML+OIL. Pac. Symp. Biocomput. 8: 624.
    • (2003) Pac. Symp. Biocomput. , vol.8 , pp. 624
    • Wroe, C.J.1    Stevens, R.2    Goble, C.A.3    Ashburner, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.