Antigen arrays for antibody profiling

Current Opinion in Chemical Biology

Volumn 10, Issue 1, 2006, Pages 67-72

  Robinson, William H ^a,b  

^a VA PALO ALTO HEALTH CARE SYSTEM   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIGEN; AUTOANTIBODY; AUTOANTIGEN; BACTERIAL DNA; COMPLEMENTARY DNA; NEUTRALIZING ANTIBODY; TUMOR ANTIGEN;

ANTIBODY DETECTION; ANTIBODY RESPONSE; ANTIBODY SPECIFICITY; ANTIGEN DETECTION; ANTIGEN EXPRESSION; AUTOIMMUNE DISEASE; B LYMPHOCYTE; CANCER DIAGNOSIS; CANCER PATIENT; CD4+ T LYMPHOCYTE; CELLULAR IMMUNITY; CEREBROSPINAL FLUID ANALYSIS; CLINICAL EXAMINATION; DIAGNOSTIC APPROACH ROUTE; DIAGNOSTIC VALUE; ENZYME LINKED IMMUNOSORBENT ASSAY; EPITOPE MAPPING; GENE EXPRESSION PROFILING; GUILLAIN BARRE SYNDROME; HUMAN; HUMORAL IMMUNITY; IMMUNE RESPONSE; INFECTION; LABORATORY TEST; LIPID ANALYSIS; MAMMAL CELL; MASS SPECTROMETRY; MEDICAL RESEARCH; MULTIPLE SCLEROSIS; NONHUMAN; PROTEIN EXPRESSION; PROTEIN MICROARRAY; PROTEIN PROCESSING; PROTEIN TARGETING; PROTEOMICS; REVIEW; RHEUMATOID ARTHRITIS; RNA TRANSLATION; SYSTEMIC LUPUS ERYTHEMATOSUS; TECHNOLOGY; THIN LAYER CHROMATOGRAPHY; YEAST;

ANTIBODIES; ANTIGEN-ANTIBODY REACTIONS; ANTIGENS; HUMANS; PROTEIN ARRAY ANALYSIS; SENSITIVITY AND SPECIFICITY;

BACTERIA (MICROORGANISMS); MAMMALIA;

EID: 32044456190     PISSN: 13675931     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbpa.2005.12.028     Document Type: Review

References (44)

1. W.J. van Venrooij, E.R. Vossenaar, and A.J. Zendman Anti-CCP antibodies: the new rheumatoid factor in the serology of rheumatoid arthritis Autoimmun Rev 3 Suppl 1 2004 S17 S19
2. C.A. von Mühlen, and E.M. Tan Autoantibodies in the diagnosis of systemic rheumatic diseases Semin Arthritis Rheum 24 1995 323 358
3. G. MacBeath, and S. Schreiber Printing proteins as microarrays for high-throughput function determination Science 289 2000 1760 1763
4. W.H. Robinson, C. DiGennaro, W. Hueber, B.B. Haab, M. Kamachi, E.J. Dean, S. Fournel, D. Fong, M.C. Genovese, and H.E. de Vegvar Autoantigen microarrays for multiplex characterization of autoantibody responses Nat Med 8 2002 295 301
5. Haab BB, Dunham MJ, Brown PO: Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol 2001, 2:research0004.0001-0004.0013.
6. S.P. Fodor, J.L. Read, M.C. Pirrung, L. Stryer, A.T. Lu, and D. Solas Light-directed, spatially addressable parallel chemical synthesis Science 251 1991 767 773
7. H.M. Geysen, R.H. Meloen, and S.J. Barteling Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acid Proc Natl Acad Sci USA 81 1984 3998 4002
8. J. James, M. Mamula, and J. Harley Sequential autoantigenic determinants of the small nuclear ribonucleoprotein Sm D shared by human lupus autoantibodies and MRL lpr/lpr antibodies Clin Exp Immunol 98 1994 419 426
9. J. Ziauddin, and D.M. Sabatini Microarrays of cells expressing defined cDNAs Nature 411 2001 107 110
10. H. Zhu, M. Bilgin, R. Bangham, D. Hall, A. Casamayor, P. Bertone, N. Lan, R. Jansen, S. Bidlingmaier, and T. Houfek Global analysis of protein activities using proteome chips Science 293 2001 2101 2105
11. M. He, and M.J. Taussig Single step generation of protein arrays from DNA by cell-free expression and in situ immobilisation (PISA method) Nucleic Acids Res 29 2001 E73
12. R.J. Fulton, R.L. McDade, P.L. Smith, L.J. Kienker, and J.R. Kettman Jr. Advanced multiplexed analysis with the FlowMetrix system Clin Chem 43 1997 1749 1756
13. S.R. Nicewarner-Pena, R.G. Freeman, B.D. Reiss, L. He, D.J. Pena, I.D. Walton, R. Cromer, C.D. Keating, and M.J. Natan Submicrometer metallic barcodes Science 294 2001 137 141
14. P.J. Utz Protein arrays for studying blood cells and their secreted products Immunol Rev 204 2005 264 282
15. V. Krenn, I. Petersen, T. Haupl, A. Koepenik, C. Blind, M. Dietel, Z. Konthur, and K. Skriner Array technology and proteomics in autoimmune diseases Pathol Res Pract 200 2004 95 103
16. H. Zhu, M. Bilgin, and M. Snyder Proteomics Annu Rev Biochem 72 2003 783 812
17. V.K. Kuchroo, A.C. Anderson, H. Waldner, M. Munder, E. Bettelli, and L.B. Nicholson T cell response in experimental autoimmune encephalomyelitis (EAE): role of self and cross-reactive antigens in shaping, tuning, and regulating the autopathogenic T cell repertoire Annu Rev Immunol 20 2002 101 123
18. A. Vincent Unravelling the pathogenesis of myasthenia gravis Nat Rev Immunol 2 2002 797 804
19. K.B. Yancey The pathophysiology of autoimmune blistering diseases J Clin Invest 115 2005 825 828
20. C.F. Verge, R. Gianani, E. Kawasaki, L. Yu, M. Pietropaolo, H.P. Chase, and G.S. Eisenbarth Number of autoantibodies (against insulin GAD or ICA512/IA2) rather than particular autoantibody specificities determines risk of type I diabetes J Autoimmun 9 1996 379 383
21. C.F. Verge, R. Gianani, E. Kawasaki, L. Yu, M. Pietropaolo, R.A. Jackson, H.P. Chase, and G.S. Eisenbarth Prediction of type I diabetes in first-degree relatives using a combination of insulin, GAD, and ICA512bdc/IA-2 autoantibodies Diabetes 45 1996 926 933
22. U. Sahin, O. Tureci, H. Schmitt, B. Cochlovius, T. Johannes, R. Schmits, F. Stenner, G. Luo, I. Schobert, and M. Pfreundschuh Human neoplasms elicit multiple specific immune responses in the autologous host Proc Natl Acad Sci USA 92 1995 11810 11813
23. Y.T. Chen, A.O. Gure, S. Tsang, E. Stockert, E. Jager, A. Knuth, and L.J. Old Identification of multiple cancer/testis antigens by allogeneic antibody screening of a melanoma cell line library Proc Natl Acad Sci USA 95 1998 6919 6923
24. E. Stockert, E. Jager, Y.T. Chen, M.J. Scanlan, I. Gout, J. Karbach, M. Arand, A. Knuth, and L.J. Old A survey of the humoral immune response of cancer patients to a panel of human tumor antigens J Exp Med 187 1998 1349 1354
25. L.V. Crawford, D.C. Pim, and R.D. Bulbrook Detection of antibodies against the cellular protein p53 in sera from patients with breast cancer Int J Cancer 30 1982 403 408
26. T. Soussi p53 Antibodies in the sera of patients with various types of cancer: a review Cancer Res 60 2000 1777 1788
27. J.A. Koziol, J.Y. Zhang, C.A. Casiano, X.X. Peng, F.D. Shi, A.C. Feng, E.K. Chan, and E.M. Tan Recursive partitioning as an approach to selection of immune markers for tumor diagnosis Clin Cancer Res 9 2003 5120 5126 The authors demonstrate that blood antibody reactivity against three or more common tumor antigens is predictive for the diagnosis of cancer. This is a significant finding in that it indicates that, like in autoimmune disease, profiles of antibody reactivities are more informative than individual specificities for the diagnosis of cancer.
28. G.E. Trivers, H.L. Cawley, V.M. DeBenedetti, M. Hollstein, M.J. Marion, W.P. Bennett, M.L. Hoover, C.C. Prives, C.C. Tamburro, and C.C. Harris Anti-p53 antibodies in sera of workers occupationally exposed to vinyl chloride J Natl Cancer Inst 87 1995 1400 1407
29. T. Bacarese-Hamilton, L. Mezzasoma, A. Ardizzoni, F. Bistoni, and A. Crisanti Serodiagnosis of infectious diseases with antigen microarrays J Appl Microbiol 96 2004 10 17
30. H.E. Neuman de Vegvar, R.R. Amara, L. Steinman, P.J. Utz, H.L. Robinson, and W.H. Robinson Microarray profiling of antibody responses against simian-human immunodeficiency virus: postchallenge convergence of reactivities independent of host histocompatibility type and vaccine regimen J Virol 77 2003 11125 11138
31. T. Bacarese-Hamilton, A. Ardizzoni, J. Gray, and A. Crisanti Protein arrays for serodiagnosis of disease Methods Mol Biol 264 2004 271 283
32. S.J. Lebrun, W.N. Petchpud, A. Hui, and C.S. McLaughlin Development of a sensitive, colorometric microarray assay for allergen-responsive human IgE J Immunol Methods 300 2005 24 31
33. J.C. Venter A part of the human genome sequence Science 299 2003 1183 1184
34. W. Hueber, P.J. Utz, and W.H. Robinson Autoantibodies in early arthritis: advances in diagnosis and prognostication Clin Exp Rheumatol 21 2003 S59 S64
35. P. Utz, and P. Anderson Posttranslational modifications, apoptosis, and bypass of tolerance to autoantigens Arthritis Rheum 41 1998 1152 1160
36. D.E. Mosier HIV-1 envelope evolution and vaccine efficacy Curr Drug Targets Infect Disord 5 2005 171 177
37. W. Hueber, B.A. Kidd, B.H. Tomooka, B.J. Lee, B. Bruce, J.F. Fries, G. Sonderstrup, P. Monach, J.W. Drijfhout, and W.J. van Venrooij Antigen microarray profiling of autoantibodies in rheumatoid arthritis Arthritis Rheum 52 2005 2645 2655 Demonstrates the use of proteomic profiles for diagnosis and assessing prognosis in human RA patients.
38. H. Garren, P.J. Ruiz, T.A. Watkins, P. Fontoura, L.T. Nguyen, E.R. Estline, D.L. Hirschberg, and L. Steinman Combination of gene delivery and DNA vaccination to protect from and reverse Th1 autoimmune disease via deviation to the Th2 pathway Immunity 15 2001 15 22
39. W.H. Robinson, P. Fontoura, B.J. Lee, H.E. de Vegvar, J. Tom, R. Pedotti, C.D. DiGennaro, D.J. Mitchell, D. Fong, and P.P. Ho Protein microarrays guide tolerizing DNA vaccine treatment of autoimmune encephalomyelitis Nat Biotechnol 21 2003 1033 1039 Application of antibody profiling to assess prognosis and develop antigen-specific tolerizing therapies to treat a mouse model of multiple sclerosis.
40. X. Wang, J. Yu, A. Sreekumar, S. Varambally, R. Shen, D. Giacherio, R. Mehra, J.E. Montie, K.J. Pienta, and M.G. Sanda Autoantibody signatures in prostate cancer N Engl J Med 353 2005 1224 1235 Using a phage-display library derived from prostate cancer tissue, the authors identified 22 peptides against which blood antibody reactivity provided an 88% specificity and an 82% sensitivity for prostate cancer.
41. Kanter JL, Narayana S, Ho PP, Catz I, Warren KG, Sobel RA, Steinman L, Robinson WH: Lipid microarrays identify key mediators of autoimmune brain inflammation. Nat Med, in press. Development of lipid microarrays for antibody profiling, and application of these arrays to demonstrate that myelin lipids are targets of the autoimmune response in MS.
42. D. Wang, S. Liu, B.J. Trummer, C. Deng, and A. Wang Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells Nat Biotechnol 20 2002 275 281
43. P. Fredman The role of antiglycolipid antibodies in neurological disorders Ann N Y Acad Sci 845 1998 341 352
44. M.P. Pender, P.A. Csurhes, N.P. Wolfe, K.D. Hooper, M.F. Good, P.A. McCombe, and J.M. Greer Increased circulating T cell reactivity to GM3 and GQ1b gangliosides in primary progressive multiple sclerosis J Clin Neurosci 10 2003 63 66