-
1
-
-
0030634897
-
Nidovirales: A new order comprising Coronaviridae and Arteriviridae
-
Cavanagh D. Nidovirales: a new order comprising Coronaviridae and Arteriviridae. Arch Virol 1997;142:629-633.
-
(1997)
Arch Virol
, vol.142
, pp. 629-633
-
-
Cavanagh, D.1
-
2
-
-
1242278242
-
Nidoviruses
-
Atlas R, Bynum WF, Cox M, editors. London: Stockton Press
-
Ziebuhr J, Siddell SG. Nidoviruses. In: Atlas R, Bynum WF, Cox M, editors. Encyclopedia of life sciences. London: Stockton Press; 2002. p 190-198.
-
(2002)
Encyclopedia of Life Sciences
, pp. 190-198
-
-
Ziebuhr, J.1
Siddell, S.G.2
-
3
-
-
0003208239
-
Coronaviridae: The viruses and their replication
-
Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Philadelphia: Lippincott Williams & Wilkins
-
Lai MM, Holmes KV. Coronaviridae: the viruses and their replication. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology. Philadelphia: Lippincott Williams & Wilkins; 2001. p 1163-1185.
-
(2001)
Fields Virology
, pp. 1163-1185
-
-
Lai, M.M.1
Holmes, K.V.2
-
4
-
-
0002257116
-
Coronaviruses
-
Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Philadelphia: Lippincott Williams & Wilkins
-
Holmes KV. Coronaviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE, editors. Fields virology. Philadelphia: Lippincott Williams & Wilkins; 2001. p 1187-1203.
-
(2001)
Fields Virology
, pp. 1187-1203
-
-
Holmes, K.V.1
-
5
-
-
1942533454
-
A previously undescribed coronavirus associated with respiratory disease in humans
-
Fouchier RAM, Hartwig NG, Bestebroer TM, Niemeyer B, de Jong JC, Simon JH, Osterhaus ADME. A previously undescribed coronavirus associated with respiratory disease in humans. Proc Natl Acad Sci USA 2004;101:6212-6216.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6212-6216
-
-
Fouchier, R.A.M.1
Hartwig, N.G.2
Bestebroer, T.M.3
Niemeyer, B.4
De Jong, J.C.5
Simon, J.H.6
Osterhaus, A.7
-
6
-
-
11144353592
-
Identification of a new human coronavirus
-
van der Hoek L, Pyre K, Jebbink MF, Vermeulen-Oost W, Berkhout RJ, Wolthers KC, Wertheim-van Dillen PM, Kaandorp J, Spaargaren J, Berkhout B. Identification of a new human coronavirus. Nat Med 2004;10:368-373.
-
(2004)
Nat Med
, vol.10
, pp. 368-373
-
-
Van Der Hoek, L.1
Pyre, K.2
Jebbink, M.F.3
Vermeulen-Oost, W.4
Berkhout, R.J.5
Wolthers, K.C.6
Wertheim-Van Dillen, P.M.7
Kaandorp, J.8
Spaargaren, J.9
Berkhout, B.10
-
7
-
-
13444282434
-
Evidence of a novel human coronavirus that is associated with respiratory tract disease in infants and young children
-
Esper F, Weibel C, Ferguson D, Landry ML, Kahn JS. Evidence of a novel human coronavirus that is associated with respiratory tract disease in infants and young children. J Infect Dis 2005;191:492-498.
-
(2005)
J Infect Dis
, vol.191
, pp. 492-498
-
-
Esper, F.1
Weibel, C.2
Ferguson, D.3
Landry, M.L.4
Kahn, J.S.5
-
8
-
-
19944427959
-
Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia
-
Woo PCY, Lau SKP, Chu Cm, Chan Kh, Tsoi Hw, Huang Y, Wong BHL, Poon RWS, Cai JJ, Luk Wk, Poon LLM, Wong SSY, Guan Y, Peiris JSM, Yuen Y. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J Virol 2005;79:884-895.
-
(2005)
J Virol
, vol.79
, pp. 884-895
-
-
Woo, P.C.Y.1
Lau, S.K.P.2
Chu, Cm.3
Chan, Kh.4
Tsoi, Hw.5
Huang, Y.6
Wong, B.H.L.7
Poon, R.W.S.8
Cai, J.J.9
Luk, Wk.10
Poon, L.L.M.11
Wong, S.S.Y.12
Guan, Y.13
Peiris, J.S.M.14
Yuen, Y.15
-
9
-
-
14544304652
-
Severe acute respiratory syndrome (SARS): A year in review
-
Skowronski DM, Astell C, Brunham RC, Low DE, Petric M, Roper RL, Talbot PJ, Tam T, Babiuk L. Severe acute respiratory syndrome (SARS): a year in review. Annu Rev Med 2005;56:357-381.
-
(2005)
Annu Rev Med
, vol.56
, pp. 357-381
-
-
Skowronski, D.M.1
Astell, C.2
Brunham, R.C.3
Low, D.E.4
Petric, M.5
Roper, R.L.6
Talbot, P.J.7
Tam, T.8
Babiuk, L.9
-
10
-
-
20044382817
-
Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human
-
Song HD, Tu CC, Zhang GW, Wang SY, Zheng K, Lei LC, Chen QX, Gao YW, Zhou HQ, Xiang H, Zheng HJ, Chern SWW, Cheng F, Pan CM, Xuan H, Chen SJ, Luo HM, Zhou DH, Liu YF, He JF, Qin PZ, Li LH, Ren YQ, Liang WJ, Yu YD, Anderson L, Wang M, Xu RH, Wu XW, Zheng HY, Chen JD, Liang G, Gao Y, Liao M, Fang L, Jiang LY, Li H, Chen F, Di B, He LJ, Lin JY, Tong S, Kong X, Du L, Hao P, Tang H, Bernini A, Yu XJ, Spiga O, Guo ZM, Pan HY, He WZ, Manuguerra JC, Fontanet A, Danchin A, Niccolai N, Li YX, Wu CI, Zhao GP. Cross-host evolution of severe acute respiratory syndrome coronavirus in palm civet and human. Proc Natl Acad Sci USA 2005;102:2430-2435.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2430-2435
-
-
Song, H.D.1
Tu, C.C.2
Zhang, G.W.3
Wang, S.Y.4
Zheng, K.5
Lei, L.C.6
Chen, Q.X.7
Gao, Y.W.8
Zhou, H.Q.9
Xiang, H.10
Zheng, H.J.11
Chern, S.W.W.12
Cheng, F.13
Pan, C.M.14
Xuan, H.15
Chen, S.J.16
Luo, H.M.17
Zhou, D.H.18
Liu, Y.F.19
He, J.F.20
Qin, P.Z.21
Li, L.H.22
Ren, Y.Q.23
Liang, W.J.24
Yu, Y.D.25
Anderson, L.26
Wang, M.27
Xu, R.H.28
Wu, X.W.29
Zheng, H.Y.30
Chen, J.D.31
Liang, G.32
Gao, Y.33
Liao, M.34
Fang, L.35
Jiang, L.Y.36
Li, H.37
Chen, F.38
Di, B.39
He, L.J.40
Lin, J.Y.41
Tong, S.42
Kong, X.43
Du, L.44
Hao, P.45
Tang, H.46
Bernini, A.47
Yu, X.J.48
Spiga, O.49
Guo, Z.M.50
Pan, H.Y.51
He, W.Z.52
Manuguerra, J.C.53
Fontanet, A.54
Danchin, A.55
Niccolai, N.56
Li, Y.X.57
Wu, C.I.58
Zhao, G.P.59
more..
-
11
-
-
17144400819
-
New antiviral drugs, vaccines and classic public health interventions against SARS coronavirus
-
Oxford JS, Balasingam S, Chan C, Catchpole A, Lambkin R. New antiviral drugs, vaccines and classic public health interventions against SARS coronavirus. Antivir Chem Chemother 2005;16:13-21.
-
(2005)
Antivir Chem Chemother
, vol.16
, pp. 13-21
-
-
Oxford, J.S.1
Balasingam, S.2
Chan, C.3
Catchpole, A.4
Lambkin, R.5
-
12
-
-
2442581595
-
Severe acute respiratory syndrome: Report of treatment and outcome after a major outbreak
-
Sung JJ, Wu A, Joynt GM, Yuen KY, Lee N, Chan PK, Cockram CS, Ahuja AT, Yu LM, Wong VW, Hui DS. Severe acute respiratory syndrome: report of treatment and outcome after a major outbreak. Thorax 2004;59:414-420.
-
(2004)
Thorax
, vol.59
, pp. 414-420
-
-
Sung, J.J.1
Wu, A.2
Joynt, G.M.3
Yuen, K.Y.4
Lee, N.5
Chan, P.K.6
Cockram, C.S.7
Ahuja, A.T.8
Yu, L.M.9
Wong, V.W.10
Hui, D.S.11
-
13
-
-
12144290587
-
Role of lopinavir/ritonavir in the treatment of SARS: Initial virological and clinical findings
-
Chu CM, Cheng VC, Hung IF, Wong MM, Chan KH, Chan KS, Kao RY, Poon LL, Wong CL, Guan Y, Peiris JS, Yuen KY. Role of lopinavir/ritonavir in the treatment of SARS: initial virological and clinical findings. Thorax 2004;59:252-256.
-
(2004)
Thorax
, vol.59
, pp. 252-256
-
-
Chu, C.M.1
Cheng, V.C.2
Hung, I.F.3
Wong, M.M.4
Chan, K.H.5
Chan, K.S.6
Kao, R.Y.7
Poon, L.L.8
Wong, C.L.9
Guan, Y.10
Peiris, J.S.11
Yuen, K.Y.12
-
15
-
-
0034072633
-
Virus-encoded proteinases and proteolytic processing in the Nidovirales
-
Ziebuhr J, Snijder EJ, Gorbalenya AE. Virus-encoded proteinases and proteolytic processing in the Nidovirales. J Gen Virol 2000;81:853-879.
-
(2000)
J Gen Virol
, vol.81
, pp. 853-879
-
-
Ziebuhr, J.1
Snijder, E.J.2
Gorbalenya, A.E.3
-
16
-
-
6344221938
-
Intracellular localization and protein interactions of the gene 1 protein p28 during mouse hepatitis virus replication
-
Brockway SM, Lu XT, Peters TR, Dermody TS, Denison MR. Intracellular localization and protein interactions of the gene 1 protein p28 during mouse hepatitis virus replication. J Virol 2004;78:11551-11562.
-
(2004)
J Virol
, vol.78
, pp. 11551-11562
-
-
Brockway, S.M.1
Lu, X.T.2
Peters, T.R.3
Dermody, T.S.4
Denison, M.R.5
-
17
-
-
4444246734
-
Identification and characterization of severe acute respiratory syndrome coronavirus replicase proteins
-
Prentice E, McAuliffe J, Lu X, Subbarao K, Denison MR. Identification and characterization of severe acute respiratory syndrome coronavirus replicase proteins. J Virol 2004;78:9977-9986.
-
(2004)
J Virol
, vol.78
, pp. 9977-9986
-
-
Prentice, E.1
McAuliffe, J.2
Lu, X.3
Subbarao, K.4
Denison, M.R.5
-
19
-
-
0031753725
-
Characterization of a papain-like cysteine-proteinase encoded by gene 1 of the human coronavirus HCV 229E
-
Herold J, Thiel V, Siddell SG. Characterization of a papain-like cysteine-proteinase encoded by gene 1 of the human coronavirus HCV 229E. Adv Exp Med Biol 1998;440:141-147.
-
(1998)
Adv Exp Med Biol
, vol.440
, pp. 141-147
-
-
Herold, J.1
Thiel, V.2
Siddell, S.G.3
-
20
-
-
0033947165
-
Identification of a novel cleavage activity of the first papain-like proteinase domain encoded by open reading frame 1a of the coronavirus avian infectious bronchitis virus and characterization of the cleavage products
-
Lim KP, Ng LFP, Liu DX. Identification of a novel cleavage activity of the first papain-like proteinase domain encoded by open reading frame 1a of the coronavirus avian infectious bronchitis virus and characterization of the cleavage products. J Virol 2000;74:1674-1685.
-
(2000)
J Virol
, vol.74
, pp. 1674-1685
-
-
Lim, K.P.1
Ng, L.F.P.2
Liu, D.X.3
-
21
-
-
0035980126
-
The autocatalytic release of a putative RNA virus transcription factor from its polyprotein precursor involves two paralogous papain-like proteases that cleave the same peptide bond
-
Ziebuhr J, Thiel V, Gorbalenya AE. The autocatalytic release of a putative RNA virus transcription factor from its polyprotein precursor involves two paralogous papain-like proteases that cleave the same peptide bond. J Biol Chem 2001;276:33220-33232.
-
(2001)
J Biol Chem
, vol.276
, pp. 33220-33232
-
-
Ziebuhr, J.1
Thiel, V.2
Gorbalenya, A.E.3
-
22
-
-
0042377358
-
Mechanisms and enzymes involved in SARS coronavirus genome expression
-
Thiel V, Ivanov KA, Putics A, Hertzig T, Schelle B, Bayer S, Weissbrich B, Snijder EJ, Rabenau H, Doerr HW, Gorbalenya AE, Ziebuhr J. Mechanisms and enzymes involved in SARS coronavirus genome expression. J Gen Virol 2003;84:2305-2315.
-
(2003)
J Gen Virol
, vol.84
, pp. 2305-2315
-
-
Thiel, V.1
Ivanov, K.A.2
Putics, A.3
Hertzig, T.4
Schelle, B.5
Bayer, S.6
Weissbrich, B.7
Snijder, E.J.8
Rabenau, H.9
Doerr, H.W.10
Gorbalenya, A.E.11
Ziebuhr, J.12
-
23
-
-
0037791748
-
Identification of the murine coronavirus MP1 cleavage site recognized by papain-like proteinase 2
-
Kanjanahaluethai A, Jukneliene D, Baker SC. Identification of the murine coronavirus MP1 cleavage site recognized by papain-like proteinase 2. J Virol 2003;77:7376-7382.
-
(2003)
J Virol
, vol.77
, pp. 7376-7382
-
-
Kanjanahaluethai, A.1
Jukneliene, D.2
Baker, S.C.3
-
24
-
-
0036091734
-
Further in vitro characterization of mouse hepatitis virus papain-like proteinase 1: Cleavage sequence requirements within ppla
-
Teng H, Weiss SR. Further in vitro characterization of mouse hepatitis virus papain-like proteinase 1: cleavage sequence requirements within ppla. J Neurovirol 2002;8:143-149.
-
(2002)
J Neurovirol
, vol.8
, pp. 143-149
-
-
Teng, H.1
Weiss, S.R.2
-
25
-
-
10044268025
-
Identification of severe acute respiratory syndrome coronavirus replicase products and characterization of papain-like protease activity
-
Harcourt BH, Jukneliene D, Kanjanahaluethai A, Bechill J, Severson KM, Smith CM, Rota PA, Baker SC. Identification of severe acute respiratory syndrome coronavirus replicase products and characterization of papain-like protease activity. J Virol 2004;78:13600-13612.
-
(2004)
J Virol
, vol.78
, pp. 13600-13612
-
-
Harcourt, B.H.1
Jukneliene, D.2
Kanjanahaluethai, A.3
Bechill, J.4
Severson, K.M.5
Smith, C.M.6
Rota, P.A.7
Baker, S.C.8
-
27
-
-
0042164218
-
Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage
-
Snijder EJ, Bredenbeek PJ, Dobbe JC, Thiel V, Ziebuhr J, Poon LLM, Guan Y, Rozanov M, Spaan WJM, Gorbalenya AE. Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage. J Mol Biol 2003;331:991-1004.
-
(2003)
J Mol Biol
, vol.331
, pp. 991-1004
-
-
Snijder, E.J.1
Bredenbeek, P.J.2
Dobbe, J.C.3
Thiel, V.4
Ziebuhr, J.5
Poon, L.L.M.6
Guan, Y.7
Rozanov, M.8
Spaan, W.J.M.9
Gorbalenya, A.E.10
-
28
-
-
0036196634
-
RNA Replication of mouse hepatitis virus takes place at double-membrane vesicles
-
Gosert R, Kanjanahaluethai A, Egger D, Bienz K, Baker SC. RNA Replication of mouse hepatitis virus takes place at double-membrane vesicles. J Virol 2002;76:3697-3708.
-
(2002)
J Virol
, vol.76
, pp. 3697-3708
-
-
Gosert, R.1
Kanjanahaluethai, A.2
Egger, D.3
Bienz, K.4
Baker, S.C.5
-
29
-
-
0022895195
-
MHV nucleocapsid synthesis in the presence of cycloheximide and accumulation of negative strand MHV RNA
-
Perlman S, Ries D, Bolger E, Chang LJ, Stoltzfus CM. MHV nucleocapsid synthesis in the presence of cycloheximide and accumulation of negative strand MHV RNA. Virus Res 1986;6:261-272.
-
(1986)
Virus Res
, vol.6
, pp. 261-272
-
-
Perlman, S.1
Ries, D.2
Bolger, E.3
Chang, L.J.4
Stoltzfus, C.M.5
-
30
-
-
0022634476
-
Coronavirus minus-strand RNA synthesis and effect of cycloheximide on coronavirus RNA synthesis
-
Sawicki SG, Sawicki DL. Coronavirus minus-strand RNA synthesis and effect of cycloheximide on coronavirus RNA synthesis. J Virol 1986;57:328-334.
-
(1986)
J Virol
, vol.57
, pp. 328-334
-
-
Sawicki, S.G.1
Sawicki, D.L.2
-
31
-
-
0028907271
-
Coronavirus protein processing and RNA synthesis is inhibited by the cysteine proteinase inhibitor E64d
-
Kim JC, Spence RA, Currier PF, Lu X, Denison MR. Coronavirus protein processing and RNA synthesis is inhibited by the cysteine proteinase inhibitor E64d. Virology 1995;208:1-8.
-
(1995)
Virology
, vol.208
, pp. 1-8
-
-
Kim, J.C.1
Spence, R.A.2
Currier, P.F.3
Lu, X.4
Denison, M.R.5
-
32
-
-
2442650226
-
Cleavage between replicase proteins p28 and p65 of mouse hepatitis virus is not required for virus replication
-
Denison MR, Yount B, Brockway SM, Graham RL, Sims AC, Lu X, Baric RS. Cleavage between replicase proteins p28 and p65 of mouse hepatitis virus is not required for virus replication. J Virol 2004;78:5957-5965.
-
(2004)
J Virol
, vol.78
, pp. 5957-5965
-
-
Denison, M.R.1
Yount, B.2
Brockway, S.M.3
Graham, R.L.4
Sims, A.C.5
Lu, X.6
Baric, R.S.7
-
33
-
-
0344628701
-
Expression of murine coronavirus recombinant papain-like proteinase: Efficient cleavage is dependent on the lengths of both the substrate and the proteinase polypeptides
-
Teng H, Pinon JD, Weiss SR. Expression of murine coronavirus recombinant papain-like proteinase: efficient cleavage is dependent on the lengths of both the substrate and the proteinase polypeptides. J Virol 1999;73:2658-2666.
-
(1999)
J Virol
, vol.73
, pp. 2658-2666
-
-
Teng, H.1
Pinon, J.D.2
Weiss, S.R.3
-
34
-
-
0027995476
-
Determinants of the p28 cleavage site recognized by the first papain-like cysteine proteinase of murine coronavirus
-
Dong S, Baker SC. Determinants of the p28 cleavage site recognized by the first papain-like cysteine proteinase of murine coronavirus. Virology 1994;204:541-549.
-
(1994)
Virology
, vol.204
, pp. 541-549
-
-
Dong, S.1
Baker, S.C.2
-
35
-
-
0028813105
-
Identification of the murine coronavirus p28 cleavage site
-
Hughes SA, Bonilla PJ, Weiss SR. Identification of the murine coronavirus p28 cleavage site. J Virol 1995;69:809-813.
-
(1995)
J Virol
, vol.69
, pp. 809-813
-
-
Hughes, S.A.1
Bonilla, P.J.2
Weiss, S.R.3
-
36
-
-
0031028291
-
Characterization of a second cleavage site and demonstration of activity in trans by the papain-like proteinase of the murine coronavirus mouse hepatitis virus strain A59
-
Bonilla PJ, Hughes SA, Weiss SR. Characterization of a second cleavage site and demonstration of activity in trans by the papain-like proteinase of the murine coronavirus mouse hepatitis virus strain A59. J Virol 1997;71:900-909.
-
(1997)
J Virol
, vol.71
, pp. 900-909
-
-
Bonilla, P.J.1
Hughes, S.A.2
Weiss, S.R.3
-
37
-
-
0031907557
-
Proteolytic processing at the amino terminus of human coronavirus 229E gene 1-encoded polyproteins: Identification of a papain-like proteinase and its substrate
-
Herold J, Gorbalenya AE, Thiel V, Schelle B, Siddell SG. Proteolytic processing at the amino terminus of human coronavirus 229E gene 1-encoded polyproteins: identification of a papain-like proteinase and its substrate. J Virol 1998;72:910-918.
-
(1998)
J Virol
, vol.72
, pp. 910-918
-
-
Herold, J.1
Gorbalenya, A.E.2
Thiel, V.3
Schelle, B.4
Siddell, S.G.5
-
38
-
-
0032486388
-
Characterization of the two overlapping papain-like proteinase domains encoded in gene 1 of the coronavirus infectious bronchitis virus and determination of the C-terminal cleavage site of an 87-kDa protein
-
Lim KP, Liu DX. Characterization of the two overlapping papain-like proteinase domains encoded in gene 1 of the coronavirus infectious bronchitis virus and determination of the C-terminal cleavage site of an 87-kDa protein. Virology 1998;245:303-312.
-
(1998)
Virology
, vol.245
, pp. 303-312
-
-
Lim, K.P.1
Liu, D.X.2
-
39
-
-
0033591345
-
A human RNA viral cysteine proteinase that depends upon a unique Zn2+-binding finger connecting the two domains of a papain-like fold
-
Herold J, Siddell SG, Gorbalenya AE. A human RNA viral cysteine proteinase that depends upon a unique Zn2+-binding finger connecting the two domains of a papain-like fold. J Biol Chem 1999;274:14918-14925.
-
(1999)
J Biol Chem
, vol.274
, pp. 14918-14925
-
-
Herold, J.1
Siddell, S.G.2
Gorbalenya, A.E.3
-
40
-
-
15244348284
-
Deubiquitination, a new function of the severe acute respiratory syndrome coronavirus papain-like protease?
-
Sulea T, Lindner HA, Purisima EO, Menard R. Deubiquitination, a new function of the severe acute respiratory syndrome coronavirus papain-like protease? J Virol 2005;79:4550-4551.
-
(2005)
J Virol
, vol.79
, pp. 4550-4551
-
-
Sulea, T.1
Lindner, H.A.2
Purisima, E.O.3
Menard, R.4
-
41
-
-
13944258080
-
The finger domain of the human deubiquitinating enzyme HAUSP is a zinc ribbon
-
Krishna SS, Grishin NV. The finger domain of the human deubiquitinating enzyme HAUSP is a zinc ribbon. Cell Cycle 2004;3:1046-1049.
-
(2004)
Cell Cycle
, vol.3
, pp. 1046-1049
-
-
Krishna, S.S.1
Grishin, N.V.2
-
44
-
-
0041620404
-
Detection of reliable and unexpected protein fold predictions using 3D-Jury
-
Ginalski K, Rychlewski L. Detection of reliable and unexpected protein fold predictions using 3D-Jury. Nucleic Acids Res 2003;31:3291-3292.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3291-3292
-
-
Ginalski, K.1
Rychlewski, L.2
-
45
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
46
-
-
0035782925
-
Protein secondary structure prediction continues to rise
-
Rost B. Protein secondary structure prediction continues to rise. J Struct Biol 2001;134:204-218.
-
(2001)
J Struct Biol
, vol.134
, pp. 204-218
-
-
Rost, B.1
-
47
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999;292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
48
-
-
0032438987
-
Hidden Markov models for detecting remote protein Viomologies
-
Karplus K, Barrett C, Hughey R. Hidden Markov models for detecting remote protein Viomologies. Bioinformatics 1998;14:846-856.
-
(1998)
Bioinformatics
, vol.14
, pp. 846-856
-
-
Karplus, K.1
Barrett, C.2
Hughey, R.3
-
49
-
-
0042379959
-
Simple consensus procedures are effective and sufficient in secondary structure prediction
-
Albrecht M, Tosatto SCE, Lengauer T, Valle G. Simple consensus procedures are effective and sufficient in secondary structure prediction. Protein Eng 2003;16:459-462.
-
(2003)
Protein Eng
, vol.16
, pp. 459-462
-
-
Albrecht, M.1
Tosatto, S.C.E.2
Lengauer, T.3
Valle, G.4
-
50
-
-
0024287213
-
Knowledge-based protein modelling and design
-
Blundell T, Carney D, Gardner S, Hayes F, Howlin B, Hubbard T, Overington J, Singh DA, Sibanda BL, Sutcliffe M. Knowledge-based protein modelling and design. Eur J Biochem 1988;172:513-520.
-
(1988)
Eur J Biochem
, vol.172
, pp. 513-520
-
-
Blundell, T.1
Carney, D.2
Gardner, S.3
Hayes, F.4
Howlin, B.5
Hubbard, T.6
Overington, J.7
Singh, D.A.8
Sibanda, B.L.9
Sutcliffe, M.10
-
51
-
-
0037184947
-
Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde
-
Hu M, Li P, Li M, Li W, Yao T, Wu JW, Gu W, Cohen RE, Shi Y. Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde. Cell 2002;111:1041-1054.
-
(2002)
Cell
, vol.111
, pp. 1041-1054
-
-
Hu, M.1
Li, P.2
Li, M.3
Li, W.4
Yao, T.5
Wu, J.W.6
Gu, W.7
Cohen, R.E.8
Shi, Y.9
-
52
-
-
0034613018
-
Structural and biochemical features distinguish the foot-and-mouth disease virus leader proteinase from other papain-like enzymes
-
Guarne A, Hampoelz B, Glaser W, Carpena X, Tormo J, Fita I, Skern T. Structural and biochemical features distinguish the foot-and-mouth disease virus leader proteinase from other papain-like enzymes. J Mol Biol 2000;302:1227-1240.
-
(2000)
J Mol Biol
, vol.302
, pp. 1227-1240
-
-
Guarne, A.1
Hampoelz, B.2
Glaser, W.3
Carpena, X.4
Tormo, J.5
Fita, I.6
Skern, T.7
-
53
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, Ferguson DM, Spellmeyer DC, Fox T1 Caldwell JW, Kollman PA. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc;117:5179-5197.
-
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
54
-
-
0032534805
-
Structure of the foot-and-mouth disease virus leader protease: A papain-like fold adapted for self-processing and eIF4G recognition
-
Guarne A, Tormo J, Kirchweger R, Pfistermueller D, Fita I, Skern T. Structure of the foot-and-mouth disease virus leader protease: a papain-like fold adapted for self-processing and eIF4G recognition. EMBO J 1998;17:7469-7479.
-
(1998)
EMBO J
, vol.17
, pp. 7469-7479
-
-
Guarne, A.1
Tormo, J.2
Kirchweger, R.3
Pfistermueller, D.4
Fita, I.5
Skern, T.6
-
55
-
-
0346494941
-
SCOP database in 2004: Refinements integrate structure and sequence family data
-
Andreeva A, Howorth D, Brenner SE, Hubbard TJP, Chothia C, Murzin AG. SCOP database in 2004: refinements integrate structure and sequence family data. Nucleic Acids Res 2004;32:D226-D229.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Andreeva, A.1
Howorth, D.2
Brenner, S.E.3
Hubbard, T.J.P.4
Chothia, C.5
Murzin, A.G.6
-
56
-
-
0038120984
-
Coronavirus main proteinase (3CLpro) structure: Basis for design of anti-SARS drugs
-
Anand K, Ziebuhr J, Wadhwani P, Mesters JR, Hilgenfeld R. Coronavirus main proteinase (3CLpro) structure: basis for design of anti-SARS drugs. Science 2003;300:1763-1767.
-
(2003)
Science
, vol.300
, pp. 1763-1767
-
-
Anand, K.1
Ziebuhr, J.2
Wadhwani, P.3
Mesters, J.R.4
Hilgenfeld, R.5
-
57
-
-
0028171897
-
Engineering the S2 subsite specificity of human cathepsin S to a cathepsin L- and cathepsin B-like specificity
-
Bromme D, Bonneau PR, Lachance P, Storer AC. Engineering the S2 subsite specificity of human cathepsin S to a cathepsin L- and cathepsin B-like specificity. J Biol Chem 1994;269:30238-30242.
-
(1994)
J Biol Chem
, vol.269
, pp. 30238-30242
-
-
Bromme, D.1
Bonneau, P.R.2
Lachance, P.3
Storer, A.C.4
-
58
-
-
0028986680
-
Modification of S1 subsite specificity in the cysteine protease cathepsin B
-
Fox T, Mason P, Storer AC, Mort JS. Modification of S1 subsite specificity in the cysteine protease cathepsin B. Protein Eng 1995;8:53-57.
-
(1995)
Protein Eng
, vol.8
, pp. 53-57
-
-
Fox, T.1
Mason, P.2
Storer, A.C.3
Mort, J.S.4
-
59
-
-
0347356249
-
Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases
-
Quesada V, Diaz-Perales A, Gutierrez-Fernandez A, Garabaya C, Cal S, Lopez-Otin C. Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases. Biochem Biophys Res Commun 2004;314:54-62.
-
(2004)
Biochem Biophys Res Commun
, vol.314
, pp. 54-62
-
-
Quesada, V.1
Diaz-Perales, A.2
Gutierrez-Fernandez, A.3
Garabaya, C.4
Cal, S.5
Lopez-Otin, C.6
-
60
-
-
9644268864
-
Mechanism and function of deubiquitinating enzymes
-
Amerik AY, Hochstrasser M. Mechanism and function of deubiquitinating enzymes. Biochim Biophys Acta 2004;1695:189-207.
-
(2004)
Biochim Biophys Acta
, vol.1695
, pp. 189-207
-
-
Amerik, A.Y.1
Hochstrasser, M.2
-
61
-
-
0033882187
-
Identification of mouse hepatitis virus papain-like proteinase 2 activity
-
Kanjanahaluethai A, Baker SC. Identification of mouse hepatitis virus papain-like proteinase 2 activity. J Virol 2000;74:7911-7921.
-
(2000)
J Virol
, vol.74
, pp. 7911-7921
-
-
Kanjanahaluethai, A.1
Baker, S.C.2
-
62
-
-
0026652760
-
Crystal structure of an actinidin-E-64 complex
-
Varughese KI, Su Y, Cromwell D, Hasnain S, Xuong NH. Crystal structure of an actinidin-E-64 complex. Biochemistry 1992;31:5172-5176.
-
(1992)
Biochemistry
, vol.31
, pp. 5172-5176
-
-
Varughese, K.I.1
Su, Y.2
Cromwell, D.3
Hasnain, S.4
Xuong, N.H.5
-
63
-
-
0031014610
-
Crystal structure of human osteoclast cathepsin K complex with E-64
-
Zhao B, Janson CA, Amegadzie BY, D'Alessio K, Griffin C, Hanning CR, Jones C, Kurdyla J, McQueney M, Qiu X, Smith WW, Abdel-Meguid SS. Crystal structure of human osteoclast cathepsin K complex with E-64. Nat Struct Biol 1997;4:109-111.
-
(1997)
Nat Struct Biol
, vol.4
, pp. 109-111
-
-
Zhao, B.1
Janson, C.A.2
Amegadzie, B.Y.3
D'Alessio, K.4
Griffin, C.5
Hanning, C.R.6
Jones, C.7
Kurdyla, J.8
McQueney, M.9
Qiu, X.10
Smith, W.W.11
Abdel-Meguid, S.S.12
-
64
-
-
0344304518
-
A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae
-
Gonzalez JM, Gomez-Puertas P, Cavanagh D, Gorbalenya AE, Enjuanes L. A comparative sequence analysis to revise the current taxonomy of the family Coronaviridae. Arch Virol 2003;148:2207-2235.
-
(2003)
Arch Virol
, vol.148
, pp. 2207-2235
-
-
Gonzalez, J.M.1
Gomez-Puertas, P.2
Cavanagh, D.3
Gorbalenya, A.E.4
Enjuanes, L.5
-
65
-
-
0035917536
-
Crystal structure of a SIR2 homolog-NAD complex
-
Min J, Landry J, Sternglanz R, Xu RM. Crystal structure of a SIR2 homolog-NAD complex. Cell 2001;105:269-279.
-
(2001)
Cell
, vol.105
, pp. 269-279
-
-
Min, J.1
Landry, J.2
Sternglanz, R.3
Xu, R.M.4
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