JC virus induces altered patterns of cellular gene expression: Interferon-inducible genes as major transcriptional targets

Virology

Volumn 345, Issue 2, 2006, Pages 457-467

  Verma, Saguna ^a   Ziegler, Katja ^a   Ananthula, Praveen ^a   Co, Juliene K G ^a   Frisque, Richard J ^b   Yanagihara, Richard ^a   Nerurkar, Vivek R ^a,c  

^a UNIVERSITY OF HAWAII   (United States)

^b PENNSYLVANIA STATE UNIVERSITY   (United States)

^c Leahi Hospital   (United States)

Author keywords

Chimeras; cig5; Copy numbers; Infection; Interferon stimulating genes; JCV; JCV SV40 chimera; Mad1 SVEDelta; Microarray; MxA; PML; Polyomavirus; Primary human fetal glial cells; Real time PCR; Transfection; U87MG

Indexed keywords

COMPLEMENTARY DNA; INTERFERON; MYXOVIRUS RESISTANCE PROTEIN; MYXOVIRUS RESISTANCE PROTEIN 1; OLIGOADENYLATE SYNTHETASE; PROTEIN CIG5; STAT1 PROTEIN; SYNTHETASE; UNCLASSIFIED DRUG;

ARTICLE; CANCER CELL CULTURE; CELL COMMUNICATION; CELL PROLIFERATION; DEMYELINATING DISEASE; DNA MICROARRAY; GENE EXPRESSION; GLIA CELL; GLIOBLASTOMA; HUMAN; HUMAN CELL; IMMUNE DEFICIENCY; LEUKOENCEPHALOPATHY; NUCLEOTIDE SEQUENCE; POLYOMA VIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS CELL INTERACTION; VIRUS INFECTION; WESTERN BLOTTING;

CELL LINE; CELL LINE, TUMOR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GLIOBLASTOMA; HUMANS; INTERFERONS; JC VIRUS; NEUROGLIA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEINS; TRANSFECTION;

JC POLYOMAVIRUS; ORTHOMYXOVIRIDAE; POLYOMAVIRUS;

EID: 31944439292     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2005.10.012     Document Type: Article

References (48)

1. A. Antinori, A. Ammassari, M.L. Giancola, A. Cingolani, S. Grisetti, R. Murri, L. Alba, B. Ciancio, F. Soldani, D. Larussa, G. Ippolito, and A. De Luca Epidemiology and prognosis of AIDS-associated progressive multifocal leukoencephalopathy in the HAART era J. NeuroVirol. 7 4 2001 323 328
2. S.K. Bandyopadhyay, G.T. Leonard Jr., T. Bandyopadhyay, G.R. Stark, and G.C. Sen Transcriptional induction by double-stranded RNA is mediated by interferon-stimulated response elements without activation of interferon-stimulated gene factor 3 J. Biol. Chem. 270 33 1995 19624 19629
3. J.R. Berger JCV-specific CD4 T cell response: another piece of the puzzle in explaining some aspects of AIDS associated PML AIDS 17 10 2003 1557 1559
4. J.R. Berger Progressive multifocal leukoencephalopathy in acquired immunodeficiency syndrome: explaining the high incidence and disproportionate frequency of the illness relative to other immunosuppressive conditions J. NeuroVirol. 9 Suppl 1 2003 38 41
5. J.R. Berger, and E.O. Major Progressive multifocal leukoencephalopathy Semin. Neurol. 19 2 1999 193 200
6. E.P. Browne, B. Wing, D. Coleman, and T. Shenk Altered cellular mRNA levels in human cytomegalovirus-infected fibroblasts: viral block to the accumulation of antiviral mRNAs J. Virol. 75 24 2001 12319 12330
7. K.C. Chin, and P. Cresswell Viperin (cig5), an IFN-inducible antiviral protein directly induced by human cytomegalovirus Proc. Natl. Acad. Sci. U.S.A. 98 26 2001 15125 15130
8. C. Daly, and N.C. Reich Double-stranded RNA activates novel factors that bind to the interferon-stimulated response element Mol. Cell. Biol. 13 6 1993 3756 3764
9. J.E. Darnell Jr., I.M. Kerr, and G.R. Stark Jak-STAT pathways and transcriptional activation in response to IFNs and other extracellular signaling proteins Science 264 5164 1994 1415 1421
10. K. Dorries The human polyomaviruses: an overview K. Khalili G.L. Stoner Human Polyomaviruses: Molecular and Clinical Perspectives 2001 John Wiley and Sons Ltd. Chichester, England 197 235
11. R.A. Du Pasquier, S. Corey, D.H. Margolin, K. Williams, L.A. Pfister, U. De Girolami, J.J. Mac Key, C. Wuthrich, J.T. Joseph, and I.J. Koralnik Productive infection of cerebellar granule cell neurons by JC virus in an HIV+ individual Neurology 61 6 2003 775 782
12. S. Enam, T.M. Sweet, S. Amini, K. Khalili, and L. Del Valle Evidence for involvement of transforming growth factor beta1 signaling pathway in activation of JC virus in human immunodeficiency virus 1-associated progressive multifocal leukoencephalopathy Arch. Pathol. Lab. Med. 128 3 2004 282 291
13. S. Endo, Y. Okada, Y. Orba, H. Nishihara, S. Tanaka, K. Nagashima, and H. Sawa JC virus agnoprotein colocalizes with tubulin J. NeuroVirol. 9 Suppl. 1 2003 10 14
14. G. Floyd-Smith, E. Slattery, and P. Lengyel Interferon action: RNA cleavage pattern of a (2′-5′) oligoadenylate-dependent endonuclease Science 212 4498 1981 1030 1032
15. M. Frese, G. Kochs, H. Feldmann, C. Hertkorn, and O. Haller Inhibition of bunyaviruses, phleboviruses, and hantaviruses by human MxA protein J. Virol. 70 2 1996 915 923
16. R.J. Frisque Nucleotide sequence of the region encompassing the JC virus origin of DNA replication J. Virol. 46 1 1983 170 176
17. R.J. Frisque, G.L. Bream, and M.T. Cannella Human polyomavirus JC virus genome J. Virol. 51 2 1984 458 469
18. X.Y. Fu, D.S. Kessler, S.A. Veals, D.E. Levy, and J.E. Darnell Jr. ISGF3, the transcriptional activator induced by interferon alpha, consists of multiple interacting polypeptide chains Proc. Natl. Acad. Sci. U.S.A. 87 21 1990 8555 8559
19. A. Garcia-Sastre, R.K. Durbin, H. Zheng, P. Palese, R. Gertner, D.E. Levy, and J.E. Durbin The role of interferon in influenza virus tissue tropism J. Virol. 72 11 1998 8550 8558
20. N. Grandvaux, M.J. Servant, B. tenOever, G.C. Sen, S. Balachandran, G.N. Barber, R. Lin, and J. Hiscott Transcriptional profiling of interferon regulatory factor 3 target genes: direct involvement in the regulation of interferon-stimulated genes J. Virol. 76 11 2002 5532 5539
21. C.L. Hersh, R.E. Brown, W.K. Roberts, E.A. Swyryd, I.M. Kerr, and G.R. Stark Simian virus 40-infected, interferon-treated cells contain 2′,5′-oligoadenylates which do not activate cleavage of RNA J. Biol. Chem. 259 3 1984 1731 1737
22. B.T. Hummer, X.L. Li, and B.A. Hassel Role for p53 in gene induction by double-stranded RNA J. Virol. 75 16 2001 7774 7777
23. G. Kochs, and O. Haller GTP-bound human MxA protein interacts with the nucleocapsids of Thogoto virus (Orthomyxoviridae) J. Biol. Chem. 274 7 1999 4370 4376
24. G. Kochs, and O. Haller Interferon-induced human MxA GTPase blocks nuclear import of Thogoto virus nucleocapsids Proc. Natl. Acad. Sci. U.S.A. 96 5 1999 2082 2086
25. X. Kong, H. San Juan, M. Kumar, A.K. Behera, A. Mohapatra, G.R. Hellermann, S. Mane, R.F. Lockey, and S.S. Mohapatra Respiratory syncytial virus infection activates STAT signaling in human epithelial cells Biochem. Biophys. Res. Commun. 306 2 2003 616 622
26. M. Kumar, and G.G. Carmichael Nuclear antisense RNA induces extensive adenosine modifications and nuclear retention of target transcripts Proc. Natl. Acad. Sci. U.S.A. 94 8 1997 3542 3547
27. R. Lin, C. Heylbroeck, P. Genin, P.M. Pitha, and J. Hiscott Essential role of interferon regulatory factor 3 in direct activation of RANTES chemokine transcription Mol. Cell. Biol. 19 2 1999 959 966
28. E.O. Major, A.E. Miller, P. Mourrain, R.G. Traub, E. de Widt, and J. Sever Establishment of a line of human fetal glial cells that supports JC virus multiplication Proc. Natl. Acad. Sci. U.S.A. 82 4 1985 1257 1261
29. C. Mandl, D.L. Walker, and R.J. Frisque Derivation and characterization of POJ cells, transformed human fetal glial cells that retain their permissivity for JC virus J. Virol. 61 3 1987 755 763
30. I. Marie, J.E. Durbin, and D.E. Levy Differential viral induction of distinct interferon-alpha genes by positive feedback through interferon regulatory factor-7 EMBO J. 17 22 1998 6660 6669
31. K.L. Mossman, P.F. Macgregor, J.J. Rozmus, A.B. Goryachev, A.M. Edwards, and J.R. Smiley Herpes simplex virus triggers and then disarms a host antiviral response J. Virol. 75 2 2001 750 758
32. J.H. Nam, K.A. Hwang, C.H. Yu, T.H. Kang, J.Y. Shin, W.Y. Choi, I.B. Kim, Y.R. Joo, H.W. Cho, and K.Y. Park Expression of interferon inducible genes following Hantaan virus infection as a mechanism of resistance in A549 cells Virus Genes 26 1 2003 31 38
33. B.L. Padgett, and D.L. Walker Prevalence of antibodies in human sera against JC virus, an isolate from a case of progressive multifocal leukoencephalopathy J. Infect. Dis. 127 4 1973 467 470
34. B.L. Padgett, and D.L. Walker Virologic and serologic studies of progressive multifocal leukoencephalopathy Prog. Clin. Biol. Res. 105 1983 107 117
35. M.W. Pfaffl A new mathematical model for relative quantification in real-time RT-PCR Nucleic Acids Res. 29 9 2001 e45
36. L.J. Poole, Y. Yu, P.S. Kim, Q.Z. Zheng, J. Pevsner, and G.S. Hayward Altered patterns of cellular gene expression in dermal microvascular endothelial cells infected with Kaposi's sarcoma-associated herpesvirus J. Virol. 76 7 2002 3395 3420
37. S. Radhakrishnan, J. Otte, S. Enam, L. Del Valle, K. Khalili, and J. Gordon JC virus-induced changes in cellular gene expression in primary human astrocytes J. Virol. 77 19 2003 10638 10644
38. S.M. Richardson-Burns, B.K. Kleinschmidt-DeMasters, R.L. DeBiasi, and K.L. Tyler Progressive multifocal leukoencephalopathy and apoptosis of infected oligodendrocytes in the central nervous system of patients with and without AIDS Arch. Neurol. 59 12 2002 1930 1936
39. V. Ruvolo, L. Navarro, C.E. Sample, M. David, S. Sung, and S. Swaminathan The Epstein-Barr virus SM protein induces STAT1 and interferon-stimulated gene expression J. Virol. 77 6 2003 3690 3701
40. M. Safak, B. Sadowska, R. Barrucco, and K. Khalili Functional interaction between JC virus late regulatory agnoprotein and cellular Y-box binding transcription factor, YB-1 J. Virol. 76 8 2002 3828 3838
41. C.E. Samuel Antiviral actions of interferons Clin. Microbiol. Rev. 14 4 2001 778 809
42. S.N. Sarkar, and G.C. Sen Novel functions of proteins encoded by viral stress-inducible genes Pharmacol. Ther. 103 3 2004 245 259
43. W.D. Snider, D.M. Simpson, S. Nielsen, J.W. Gold, C.E. Metroka, and J.B. Posner Neurological complications of acquired immune deficiency syndrome: analysis of 50 patients Ann. Neurol. 14 4 1983 403 418
44. J.J. Swenson, P.W. Trowbridge, and R.J. Frisque Replication activity of JC virus large T antigen phosphorylation and zinc finger domain mutants J. NeuroVirol. 2 2 1996 78 86
45. R.W. von Einsiedel, I.W. Samorei, M. Pawlita, B. Zwissler, M. Deubel, and H.V. Vinters New JC virus infection patterns by in situ polymerase chain reaction in brains of acquired immunodeficiency syndrome patients with progressive multifocal leukoencephalopathy J. NeuroVirol. 10 1 2004 1 11
46. D.L. Walker, and R.J. Frisque The biology and molecular biology of JC virus N.P. Salzman The Papovaviridae, The Polyomaviruses vol. I 1986 Plenum Publishing New York 327 377
47. H. Zhu, J.P. Cong, G. Mamtora, T. Gingeras, and T. Shenk Cellular gene expression altered by human cytomegalovirus: global monitoring with oligonucleotide arrays Proc. Natl. Acad. Sci. U.S.A. 95 24 1998 14470 14475
48. K. Ziegler, T. Bui, R.J. Frisque, A. Grandinetti, and V.R. Nerurkar A rapid in vitro polyomavirus DNA replication assay J. Virol. Methods 122 1 2004 123 127