Phylogeography of the narrow endemic, Helenium virginicum (Asteraceae), based upon ITS sequence comparisons

Systematic Botany

Volumn 30, Issue 4, 2005, Pages 887-898

  Simurda, Maryanne C ^a   Marshall, David C ^b   Knox, John S ^a  

^a WASHINGTON AND LEE UNIVERSITY   (United States)

^b UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASTERACEAE; HELENIUM; HELENIUM AUTUMNALE; HELENIUM FLEXUOSUM; HELENIUM VIRGINICUM;

EID: 31844450608     PISSN: 03636445     EISSN: 03636445     Source Type: Journal    
DOI: 10.1600/036364405775097725     Document Type: Article

References (58)

1. AKAIKE, H. 1973. Information theory as an extension of the maximum likelihood principle. Pp. 267-281 in Second international symposium on information theory, eds. B. N. Petrov and F. Csaki. Budapest: Akademiai Kiado.
2. ALFARO, M. E., S. ZOLLER, and F. LUTZONI. 2003. Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution 20: 255-266.
3. ANTONOVICS, J., M. E. HOOD, P. H. THRALL, J. Y. ABRAMS, and G. M. DUTHIES. 2003. Herbarium studies on the distribution of anther-smut fungus (Microbotryum violaceum) and Silene species (Caryophyllaceae) in the eastern United States. American Journal of Botany 90: 1522-1531.
4. ARGUS, G. W. 1992. The phytogeography of rare vascular plants in Ontario and its bearing on plant conservation. Canadian Journal of Botany 70: 469-490.
5. BALDWIN, B. G., M. J. SANDERSON, J. M. PORTER, M. F. WOJCIECHOWSKI, C. S. CAMPBELL, and M. J. DONOGHUE. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
6. _ and B. L. WESSA. 2000. Phylogenetic placement of Pelucha and new subtribes in the Heleniae sensu stricto (Compositae). Sytematic Botany 25: 522-538.
7. BUCKLEY, T. R., C. SIMON, and G. K. CHAMBERS. 2001. Exploring among-site rate variation models in a maximum likelihood framework using empirical data: effects of model assumptions on estimates of topology, branch lengths, and bootstrap support. Systematic Biology 50: 67-86.
8. BURNHAM, K. P. and D. R. ANDERSON. 1998. Model selection and inference. A practical information-theoretic approach. New York: Springer.
9. CLARKE, G., D. LEVERINGTON, J. TELLER, and A. DYKE. 2003. Superlakes, megafloods, and abrupt climate change. Science 301: 922-923.
10. CUMMINGS, M. P., S. A. HANDLEY, D. S. MYERS, D. L. REED, A. ROKAS, and K. WINKA. 2003. Comparing bootstrap and posterior probability values in the four-taxon case. Systematic Biology 52: 477-487.
11. ERIXON, I., B. SVENNBLAD, T. BRITTON, and B. OXELMAN. 2003. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Systematic Biology 52: 665-673.
12. FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17: 368-376.
13. _. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-391.
14. _. 1988. Phylogenies from molecular sequences: inference and reliability. Annual Review of Genetics 22: 521-565.
15. _. 2004. Inferring phylogenies. Sunderland: Sinauer Associates
16. FRATI, F., C. SIMON, J. SULLIVAN, and D. L. SWOFFORD. 1997. Evolution of the mitochondrial cytochrome oxidase II gene in Collembola. Journal of Molecular Evolution 44: 145-158.
17. GOLDMAN, N. 1993. Statistical tests of models of DNA substitution. Journal of Molecular Evolution 36: 182-198.
18. GUGERLI, F. and R. HOLDEREGGER. 2001. Nunatak survival, tabula rasa and the influence of the Pleistocene ice-ages on plant evolution in mountain areas. Trends in Plant Science 6: 397-398.
19. HOLDER, M. and P. O. LEWIS. 2003. Phylogeny estimation: traditional and Bayesian approaches. Nature Reviews: Genetics 4: 275-284.
20. HUELSENBECK, J. P. and K. A. CRANDALL. 1997. Phylogeny estimation and hypothesis testing using maximum likelihood. Annual Review of Ecology and Systematics 28: 437-466.
21. _ and F. RONQUIST. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
22. JACKSON, S. T. and D. K. SINGER. 1997. Climate change and the development of coastal plain disjunctions in the central Great Lakes region. Rhodora 99: 101-117.
23. JUKES, T. H. and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in Mammalian protein metabolism, ed. H. M. Munro. New York: Academic Press.
24. KEDDY, P. A. 1981. Vegetation with Atlantic coastal plain affinities in Axe Lake, near Georgian Bay, Ontario. Canadian Field-Naturalist 95: 241-248.
25. _ and A. A. REZNICEK. 1982. The role of seed banks in the persistence of Ontario's coastal plain flora. American Journal of Botany 69: 13-22.
26. KNOX, J. S. 1987. An experimental garden test of characters used to distinguish Helenium virginicum Blake from H. autumnale L. Castanea 52: 52-58.
27. _. 1997. A nine year demographic study of Helenium virginicum (Asteraceae), a narrow endemic seasonal wetland plant. Journal of the Torrey Botanical Society 124: 236-245.
28. _, M. J. GUTOWSKI, D. C. MARSHALL, and O. G. RAND. 1995. Tests of the genetic bases of character differences between Helenium virginicum and H. autumnale (Asteraceae), using common gardens and transplant studies. Systematic Botany 20: 120-131.
29. _, F. W. STEARNS, and C. K. DIETZEL. 1999. Factors controlling the distribution and abundance of the narrow endemic, Helenium virginicum (Asteraceae): antiherbivore defense. Banisteria 13: 95-100.
30. KOCH, M. and K. BERNHARDT. 2004. Comparative biogeography of the cytotypes of annual Microthlaspi perfoliatum (Brassicaceae) in Europe using isozymes and cpDNA data: refugia, diversity centers, and postglacial colonization. American Journal of Botany 91: 115-124.
31. LARGET, B. and D. L. SIMON. 1999. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Molecular Biology and Evolution 16: 750-759.
32. LI, S., D. K. PEARL, and H. DOSS. 2000. Phylogenetic tree reconstruction using Markov chain Monte Carlo. Journal of the American Statistical Association 95: 493-508.
33. MAU, B., M. A. NEWTON, and B. LARGET. 1999. Bayesian phylogenetic inference via Markov chain Monte Carlo methods. Biometrics 55: 1-12.
34. MAYDEN, R. L. 1987. Pleistocene glaciation and historical biogeography of North American central-highland fishes. Pp. 141-151 in Quaternary environments in Kansas Guidebook series 5, ed. W. C. Johnson. Lawrence: Kansas Geological Survey
35. MESSMORE, N. A. and J. S. KNOX. 1997. The breeding system of the narrow endemic, Helenium virginicum (Asteraceae). Journal of the Torrey Botanical Society 124: 318-321.
36. NOONAN, G. R. 1988. Biogeography of North American and Mexican insects and a critique of vicariance biogeography. Systematic Zoology 37: 366-384.
37. NYLANDER, J. A. A., F. RONQUIST, J. P. HUELSENBECK, and J. L. NIEVES-ALDREY. 2004. Bayesian phylogenetic analysis of combined data. Systematic Biology 53: 47-67.
38. OUTWATER, A. B. 1996. Water: a natural history. New York: Basic Books.
39. POSADA, D. and K. A. CRANDALL. 2001. Selecting the best-fitmodel of nucleotide substitution. Systematic Biology 50: 580-601.
40. RANNALA, B. and Z. YANG. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-311.
41. REZNICEK, A. A. 1994. The disjunct coastal plain flora in the Great Lakes region. Biological Conservation 68: 203-215.
42. RIESEBERG, L. H. and L. BROUILLET. 1994. Are many species paraphyletic? Taxon 43: 21-32.
43. _, O. RAYMOND, D. M. ROSENTHAL, Z. LAI, K. LIVINGSTONE, T. NAKAZATO, J. L. DURPHY, A. E. SCHWARTZBACH, L. A. DONAVAN, and C. LEXER. 2003. Major ecological transitions in wild sunflowers facilitated by hybridization. Science 301: 1211-1216.
44. SANG, T., D. J. CRAWFORD, and T. F. STEUSSEY. 1995. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implications for biogeography and concerted evolution. Proceedings of the National Academy of Sciences USA 92: 6813-6817.
45. SAWADA, M., A. E. VIAU, and K. GAJEWSKI. 2003. The biogeography of aquatic macrophytes in North America since the Last Glacial Maximum. Journal of Biogeography 30: 999-1017.
46. SHUMAN, B., P. BARTLEIN, N. LOGAR, P. NEWBY, and T. WEBB III. 2002a. Parallel climate and vegetation responses to the early Holocene collapse of the Laurentide Ice Sheet. Quaternary Science Reviews 21: 1793-1805.
47. _, T. WEBB III, P. BARTLEIN, and J. W. WILLIAMS. 2002b. The anatomy of a climatic oscillation: vegetation change in eastern North America during the Younger Dryas chronozone. Quaternary Science Reviews 21: 1777-1791.
48. SIMMONS, M. P. and H. OCHOTERENA. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369-381.
49. SIMURDA, M. C. and J. S. KNOX. 2000. ITS evidence for the disjunct distribution between Virginia and Missouri of the narrow endemic Helenium virginicum (Asteraceae). Journal of the Torrey Botanical Society 127: 316-322.
50. STEYERMARK, J. 1960. An unusual hybrid Helenium. Rhodora 62: 343-346.
51. _. 1963. Flora of Missouri. Ames: Iowa State University Press.
52. STRANGE, R. M. and B. M. BURR. 1997. Intraspecific phylogeography of North American highland fishes: a test of the Pleistocene vicariance hypothesis. Evolution 51: 885-897.
53. STUCKEY, R. L. 1982. Absence of certain aquatic vascular plants from the prairie peninsula. Pp. 97-104 in Proceedings of the eighth North American prairie conference, ed. R. Brewer. Kalamazoo: Western Michigan University.
54. _. 1993. Phytogeographical outline of aquatic and wetland angiosperms in continental eastern North America. Aquatic Botany 44: 259-301.
55. SWOFFORD, D. L. 2002. PAUP*. Phylogenetic analysis using parsimony (*and other methods), Version 4. Sunderland: Sinauer Associates.
56. TELLER, J. T., D. W. LEVERINGTON, and J. D. MANN. 2002. Freshwater outbursts to the oceans from glacial Lake Agassiz and their role in climate change during the last deglaciation. Quaternary Science Reviews 21: 879-887.
57. VAN ALSTINE, N. 1996. A reassessment of the status of the Helenium virginicum populations in the Shenandoah Valley of Virginia. Natural Heritage Technical Report 96-6. Virginia Department of Conservation and Recreation, Division of Natural Heritage, Richmond, Virginia.
58. WHEELER, W. C. 1990. Nucleic acid sequence phylogeny and random outgroups. Cladistics 6: 363-367.