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Arumuganathan, K.1
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2
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0031908205
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2 population
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This map is still important in analyzing the rice genome because the probes, sequences and other information are publicly available on-line from the DNA bank at the Ministry of Agriculture, Forestry and Fisheries of Japan (URL
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2 population. Genetics. 148:1998;479-494. This map is still important in analyzing the rice genome because the probes, sequences and other information are publicly available on-line from the DNA bank at the Ministry of Agriculture, Forestry and Fisheries of Japan (URL http://bank.dna.affrc.go.jp/index.html) .
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Harushima, Y.1
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5
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0002184318
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Construction and characterization of rice genomic libraries, PAC library of japonica variety Nipponbare, and BAC library of indica variety Kasalath
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in press
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Baba T., Katagiri S., Tanoue H., Tanaka R., Chiden Y., Saji S., Hamada M., Nakashima M., Okamoto M.et al. Construction and characterization of rice genomic libraries, PAC library of japonica variety Nipponbare, and BAC library of indica variety Kasalath. Misc Publ Natl Inst Agrobiol Resour. 2000;. in press.
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Baba, T.1
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Okamoto, M.9
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6
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0342483063
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URL. Rice BAC-end sequence information is available on this web page. The piled end sequences are useful not only for the identification of overlapping BAC clones during genome sequencing but also for chasing orthologous sequences among databases
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Clemson University Genomics Institute: Rice BAC end sequencing pro-ject. URL http://www.genome.clemson.edu/projects/rice_bac_end.html Rice BAC-end sequence information is available on this web page. The piled end sequences are useful not only for the identification of overlapping BAC clones during genome sequencing but also for chasing orthologous sequences among databases.
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Clemson University Genomics Institute: Rice BAC End Sequencing Pro-ject
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7
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0005227212
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Current progress in rice EST mapping
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January 17-21, San Diego (also available at URL
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Wu J, Shimokawa T, Maehara T, Yazaki J, Harada C, Yamamoto S, Takazaki Y, Fujii F, Ono N, Koike K et al.: Current progress in rice EST mapping. Abstract P331 of Plant & Animal Genome VII, 1999 January 17-21, San Diego (also available at URL http://www.intl-pag.org/pag/7/abstracts/pag7264.html) .
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Wu, J.1
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Yamamoto K., Sasaki T. Large-scale EST sequencing in rice. Plant Mol Biol. 35:1997;135-144.
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Yamamoto, K.1
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9
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••]). Further information on the Rice Genome Research Program is available on the home page of this URL
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••]). Further information on the Rice Genome Research Program is available on the home page of this URL.
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Rice Genome Research Program: Genome Sequencing
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11
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0030801002
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Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
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Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
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12
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0031586003
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Prediction of complete gene structures in human genomic DNA
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Burge C., Karlin S. Prediction of complete gene structures in human genomic DNA. J Mol Biol. 268:1997;78-94.
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Burge, C.1
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13
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0029822410
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Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences
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Kleffe J., Hermann K., Vahrson W., Wittig B., Brendel V. Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences. Nucleic Acids Res. 24:1996;4709-4718.
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14
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0030627562
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The Gene-Finder computer tools for analysis of human and model organisms genome sequences
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C. Rawling, D. Clark, R. Altman, L. Hunter, T. Lengauer, & S. Wodak. Halkidiki, Greece: AAAI Press
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Solovyev V.V., Salamov A.A. The Gene-Finder computer tools for analysis of human and model organisms genome sequences. Rawling C., Clark D., Altman R., Hunter L., Lengauer T., Wodak S. Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology. 1997;294-302 AAAI Press, Halkidiki, Greece.
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Solovyev, V.V.1
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15
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0032519353
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GeneMark.hmm: New solutions for gene finding
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Lukashin A.V., Borodovsky M. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26:1998;1107-1115.
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Lukashin, A.V.1
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16
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0029791403
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Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information
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Hebsgaard S.M., Korning P.G., Tolstrup N., Engelbrecht J., Rouze P., Brunak S. Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information. Nucleic Acids Res. 24:1996;3439-3452.
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Miropeats: Graphical DNA sequence comparisons
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Parsons J.D. Miropeats: graphical DNA sequence comparisons. Comput Applic Biosci. 11:1995;615-619.
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Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants
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Sato Y., Sentoku N., Miura Y., Hirochika H., Kitano H., Matsuoka M. Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants. EMBO J. 18:1999;992-1002.
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20
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0033621108
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Rice gibberellin-insensitive dwarf mutant gene Dwarf1 encodes the alpha-subunit of GTP-binding protein
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Ashikari M., Wu J., Yano M., Sasaki T., Yoshimura A. Rice gibberellin-insensitive dwarf mutant gene Dwarf1 encodes the alpha-subunit of GTP-binding protein. Proc Natl Acad Sci USA. 96:1999;10284-10289.
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21
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0032539678
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Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation
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Yoshimura S., Yamanouchi U., Katayose Y., Toki S., Wang Z.X., Kono I., Kurata N., Yano M., Uwata N., Sasaki T. Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA. 95:1998;1663-1668.
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Kurata, N.7
Yano, M.8
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22
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0033166093
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The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes
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Wang Z.X., Yano M., Yamanouchi U., Iwaoto M., Monna L., Hayasaka H., Katayose Y., Sasaki T. The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J. 19:1999;55-64.
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Wang, Z.X.1
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23
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0032478340
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Comparative genetics in the grasses
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This article describes synteny among grass species and stresses the importance of comparative genetics using rice as a model plant.
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Gale M.D., Devos K.M. Comparative genetics in the grasses. Proc Natl Acad Sci USA. 95:1998;1971-1974. This article describes synteny among grass species and stresses the importance of comparative genetics using rice as a model plant.
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Gale, M.D.1
Devos, K.M.2
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24
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0342483058
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An object-oriented query system to multiple crop database
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January 9-12, San Diego (available at URL
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Fang Z, Sanchez H, Antonio BA, Hancock D, Polacco M, Chen SS, Sakata K, Sasaki T, Coe E: An object-oriented query system to multiple crop database. Abstract C1 of Plant & Animal Genome VIII, 2000 January 9-12, San Diego (available at URL http://www.intl-pag.org/pag/8/abstracts/pag8014.html) .
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Abstract C1 of Plant & Animal Genome
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Fang, Z.1
Sanchez, H.2
Antonio, B.A.3
Hancock, D.4
Polacco, M.5
Chen, S.S.6
Sakata, K.7
Sasaki, T.8
Coe, E.9
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