Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion

Molecular Genetics and Genomics

Volumn 267, Issue 6, 2002, Pages 713-720

  Yuan, Q ^a   Hill, J ^a   Hsiao, J ^a   Moffat, K ^a   Ouyang, S ^a   Cheng, Z ^b   Jiang, J ^b   Buell, C ^a  

^a J CRAIG VENTER INSTITUTE   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Chloroplast; Gene families; Glutathione S transferase; Oryza sativa; Repetitive sequence

Indexed keywords

CHLOROPLAST DNA; GLUTATHIONE TRANSFERASE;

ARTICLE; CHLOROPLAST; CHROMOSOME 10; CONTROLLED STUDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE DUPLICATION; GENE SEQUENCE; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RICE; SEQUENCE ANALYSIS;

BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; DNA TRANSPOSABLE ELEMENTS; DNA, CHLOROPLAST; EVOLUTION, MOLECULAR; GENE DUPLICATION; IN SITU HYBRIDIZATION, FLUORESCENCE; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; SEQUENCE ALIGNMENT;

EMBRYOPHYTA; INSERTION SEQUENCES; JAPONICA; ORYZA SATIVA;

EID: 0036047666     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-002-0706-1     Document Type: Article

References (36)

1. The genome sequence of Rickettsia prowazekii and the origin of mitochondria
2. Plastid DNA sequence homologies in the tobacco nuclear genome
3. Evolutionary transfer of the chloroplast tufA gene to the nucleus
4. The use of the Monsanto draft rice genome sequence in research
5. Organellar genes: Why do they end up in the nucleus?
6. Pervasive migration of organellar DNA to the nucleus of plants
7. Rice as a model for cereal genomics
8. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
9. TIGRFAMs: A protein family resource for the functional identification of proteins
10. The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
11. Application of fiber-FISH in physical mapping of Arabidopsis thaliana
12. Digital mapping of bacterial artificial chromosomes by fluorescence in situ hybridization
13. Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes
14. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
15. Mitochondrial genome evolution and the origin of eukaryotes
16. Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants
17. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana
18. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
19. Gene transfer from organelles to the nucleus: How much, what happens, and why?
20. Gene transfer to the nucleus and the evolution of chloroplasts
21. Many parallel losses of infA from chloroplast DNA during angiosperm evolution with multiple independent transfers to the nucleus
22. The TIGR Gene indices: Analysis of gene transcript sequences in highly sampled eukaryotic species
23. How many genes in Arabidopsis come from cyanobacteria? An estimate from 386 protein phylogenies
24. International Rice Genome Sequencing Project: The effort to completely sequence the rice genome
25. Complete structure of the chloroplast genome of Arabidopsis thaliana
26. Pfam: Multiple sequence alignments and HMM-profiles of protein domains
27. Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: Implication of potential sequencing errors caused by large-unit repeats
28. Recent stable insertion of mitochondrial DNA into an Arabidopsis polyubiquitin gene by nonhomologous recombination
29. TIGR assembler: A new tool for assembling large shotgun sequencing projects
30. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
31. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
32. The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
33. A draft sequence of the rice (Oryza sativa ssp. indica) genome
34. A draft sequence of the rice genome (Oryza sativa L. ssp. indica)