Release factor RF-3 GTPase activity acts in disassembly of the ribosome termination complex

RNA

Volumn 4, Issue 8, 1998, Pages 973-983

  Grentzmann, Guido ^a   Kelly, Paul J ^b   Laalami, Soumaya ^c   Shuda, Masahiro ^d   Firpo, Matthew A ^a   Cenatiempo, Yves ^c   Kaji, Akira ^d  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b UNIVERSITY OF UTAH   (United States)

^c IBMIG Institut de Biologie Moleculaire et dIngenierie Genetique   (France)

^d UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

GTPase; RF1; RF2; RRF; Translation

Indexed keywords

GUANOSINE TRIPHOSPHATASE; TRANSLATION TERMINATION FACTOR;

ARTICLE; ENZYME ACTIVITY; NONHUMAN; NUCLEOTIDE METABOLISM; PRIORITY JOURNAL; RIBOSOME; RNA TRANSLATION; SEQUENCE ANALYSIS; TRANSLATION REGULATION;

GTP PHOSPHOHYDROLASE-LINKED ELONGATION FACTORS; GUANOSINE TRIPHOSPHATE; HYDROLYSIS; PEPTIDE CHAIN ELONGATION, TRANSLATIONAL; PEPTIDE CHAIN INITIATION, TRANSLATIONAL; PEPTIDE CHAIN TERMINATION, TRANSLATIONAL; PEPTIDE ELONGATION FACTOR G; PEPTIDE ELONGATION FACTORS; PEPTIDE TERMINATION FACTORS; RIBOSOMES; RNA, TRANSFER, AMINO ACYL;

EID: 0031825179     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838298971576     Document Type: Article

References (58)

1. Adamski FM, McCaughan KK, Jorgensen F, Kurland CG, Tate WP. 1994. The concentration of polypeptide chain release factors 1 and 2 at different growth rates of Escherichia coli. J Mol Biol 238:302-308.
2. Beaudry P, Sander G, Grunberg-Manago M, Douzou P. 1979. Cation-induced regulatory mechanism of GTPase activity dependent on polypeptide initiation factor 2. Biochemistry 18:202-207.
3. Brot N, Tate WP, Caskey CT, Weissbach H. 1974. The requirement for ribosomal proteins L7/L12 in peptide chain termination. Proc Natl Acad of Sci USA 71:89-92.
4. Buckingham RH, Grentzmann G, Kisselev L. 1997. Polypeptide chain release factors. Mol Microbiol 24:449-456.
5. Capecchi MR. 1967. Polypeptide chain termination in vitro: Isolation of a release factor. Proc Natl Acad Sci USA 58:1144-1151.
6. Capecchi MR, Klein HA. 1969. Characterization of three proteins involved in polypeptide chain termination. Cold Spring Harbor Symp Quant Biol 34:469-477.
7. Caskey CT. 1977. Peptide chain termination. In: Weissbach H, Pestka S, eds. Molecular mechanisms of protein biosynthesis. New York: Academic Press, pp 443-465.
8. Caskey CT, Scolnick E, Tompkins R, Goldstein J, Milman G. 1969. Peptide chain termination, codon, protein factor and ribosomal requirements. Cold Spring Harbor Symp Quant Biol 34:479-488.
9. Caskey CT, Scolnick E, Tompkins R, Milman G, Goldstein J. 1971. Release factors: In vitro assay and purification. Methods Enzymol 20:367-375.
10. Caskey CT, Tompkins R, Scolnick E, Caryk T, Nierenberg M. 1968. Sequential translation of trinucleotide codons for initiation and termination of protein synthesis. Science 162:135-138.
11. Conway TW, Lipmann F. 1964. Characterization of a ribosome-linked guanosine triphosphatase in Escherichia coli extracts. Proc Natl Acad Sci USA 52:1462-1469.
12. Crain PF. 1990. Mass spectrometric techniques in nucleic acid research. Mass Spectrom Rev 9:505-554.
13. Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, Fleischmann RD, Bult CJ, Kerlavage AR, Sutton G, Kelley JM, Fritchman JL, Weidman JF, Small KV, Sandusky M, Fuhrmann J, Nguyen D, Utterback TR, Saudek DM, Phillips CA, Merrick JM, Tomb JF, Dougherty BA, Bott KF, Hu PC, Lucier TS, Peterson SN, Smith HO, Hutchison CA III, Venter JC. 1995. The minimal gene complement of Mycoplasma genitalium. Science 270:397-403.
14. Freistroffer DV, Pavlov MY, McDougall J, Buckingham RH, Ehrenberg M. 1997. Release factor RF3 in E. coli accelerates the dissociation of release factors RF1 and RF2 from the ribosome in a GTP-dependent manner. EMBO 16:4126-4133.
15. Frolova L, Le Goff X, Rasmussen HH, Cheperegin S, Drugeon G, Kress M, Arman I, Haenni AL, Celis JE, Philippe M, Justesen J, Kisselev L 1994. A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor. Nature 372:701-703.
16. Frolova L, LeGoff X, Zhouravleva G, Davydova E, Philippe M, Kisselev L. 1996. Eukaryotic polypeptide chain release factor eRF3 is an eRF1- and ribosome-dependent guanosine triphosphatase. RNA 2:334-341.
17. Ganoza MC. 1966. Polypeptide chain termination in cell-free extracts of E. coli. Cold Spring Harbor Symp Quant Biol 37:263-268.
18. Ganoza MC, Nakamoto T. 1966. Studies on the mechanism of polypeptide chain termination in cell-free extracts of E. coli Proc Natl Acad Sci USA 55:162-169.
19. Goldstein JL, Beaudet AL, Caskey CT. 1970a. Peptide chain termination with mammalian release factor. Proc Natl Acad Sci USA 67:99-106.
20. Goldstein JL, Caskey CT. 1970. Peptide chain termination: Effect of protein S on ribosomal binding of release factors. Proc Natl Acad Sci USA 67:537-543.
21. Goldstein J, Milman G, Scolnick E, Caskey T. 1970b. Peptide chain termination. VI. Purification and site of action of S. Proc Natl Acad Sci USA 65:430-437.
22. Grentzmann G. 1994. RF-3, facteur de terminaison de la traduction chez Escherichia coli [dissertation]. Paris: Université Paris 6.
23. Grentzmann G, Brechemier-Baey D, Heurgue-Hamard V, Buckingham RH. 1995. Function of polypeptide chain release factor RF-3 in Escherichia coli. RF-3 action in termination is predominantly at UGA-containing stop signals. J Biol Chem 260:10595-10600.
24. Grentzmann G, Brechemier-Baey D, Heurgue V, Mora L, Buckingham RH. 1994. Localization and characterization of the gene encoding release factor RF3 in Escherichia coli. Proc Natl Acad Sci USA 91:5848-5852.
25. Grentzmann G, Kelly PJ. 1997. Ribosomal binding site of release factors RF1 and RF2. A new translational termination assay in vitro. J Biol Chem 272:12300-12304.
26. Heurgué-Hamard V, Mora L, MacDougall J, Leboeuf C, Grentzmann G, Ehrenberg M, Buckingham RH. 1998. Ribosome release factor RF4 and termination factor RF3 are involved in dissociation of peptidyl-tRNA from the ribosome. EMBO J 17:808-816.
27. Hirashima A, Kaji A. 1972. Purification and properties of ribosome-releasing factor. Biochemistry 11:4037-4044.
28. Ichikawa S, Kaji A. 1989. Molecular cloning and expression of ribosome releasing factor. J Biol Chem 264:20054-20059.
29. Janosi L, Hara H, Zhang S, Kaji A. 1996. Ribosome recycling by ribosome recycling factor (RRF) - An important but overlooked step of protein biosynthesis. Adv Biophys 32:121-201.
30. Janosi L, Mottagui-Tabar S, lsaksson, LA, Sekine Y, Ohtsubo E, Zhang S, Goon S, Nelken S, Shuda M, Kaji A. 1998. Evidence for in vivo ribosome recycling, the fourth step in protein biosynthesis. EMBO J 17:1141-1151.
31. Janosi L, Shimizu I, Kaji A. 1994. Ribosome recycling factor (ribosome releasing factor) is essential for bacterial growth. Proc Natl Acad Sci USA 91:4249-4253.
32. Kaziro Y, Inoue-Yokosawa N, Kawakita M. 1972. Studies on polypeptide elongation factor from E. coli. I. Crystalline factor G. J Biochem 72:853-863.
33. Kolakofsky D, Dewey KF, Hershey JW, Thach RE. 1968. Guanosine 5′-triphosphatase activity of initiation factor f2. Proc Natl Acad Sci USA 61:1066-1070.
34. Laalami S, Grentzmann G, Bremaud L, Cenatiempo Y. 1996. Messenger RNA translation in prokaryotes: GTPase centers associated with translational factors. Biochimie 78:577-589.
35. Limbach PA, Crain PF, McCloskey JA. 1995. Characterization of oligonucleotides and nucleic acids by mass spectrometry. Curr Opin Biotechnol 6:96-102.
36. McCaughan KK, Ward CD, Trotman CNA, Tate WP. 1984. The ribosomal binding domain for the bacterial release factors RF-1, RF-2 and RF-3. FEBS Lett 175:90-94.
37. Menninger JR. 1979. Accumulation of peptidyl tRNA is lethal to Escherichia coli. J Bacteriol 137:694-696.
38. Mikuni O, Ito K, Moffat J, Matsumura K, McCaughan K, Nobukuni T, Tate W, Nakamura Y. 1994. Identification of the prfC gene, which encodes peptide-chain-release factor 3 of Escherichia coli. Proc Natl Acad Sci USA 9:5798-5802.
39. Milman G, Goldstein J, Scolnick E, Caskey T. 1969. Peptide chain termination 3. Stimulation of in vitro termination. Proc Natl Acad Sci USA 63:183-190.
40. Nakamura Y, Ito K, Isaksson LA. 1996. Emerging understanding of translation termination. Cell 87:147-150.
41. Nomura M, Gourse R, Baughman G. 1984. Regulation of the synthesis of ribosomes and ribosomal components. Annu Rev Biochem 53:75-117.
42. Ogawa K, Kaji A. 1975. Requirement for ribosome-releasing factor for the release of ribosomes at the termination codon. Eur J Biochem 58:411-419.
43. Oppenheim DS, Yanofsky C. 1980. Translational coupling during expression of the tryptophane operon of Escherichia coli. Genetics 95:785-795.
44. Pavlov MY, Freistroffer DV, McDougall J, Buckingham RH, Ehrenberg M. 1997. Fast recycling of Escherichia coli ribosomes requires both ribosome recycling factor (RRF) and release factor RF3. EMBO 16:4134-4141.
45. Pel HJ, Moffat JG, Ito K, Nakamura Y, Tate WP. 1998. Escherichia coli release factor 3: Resolving the paradox of a typical G protein structure and atypical function with guanine nucleotides. RNA 4:47-54.
46. Remes B, Elseviers D. 1980. Adenosine 5′-triphosphate leakage does not cause abortive infection of bacteriophage T7 in male Escherichia coli. J Bacteriol 143:1054-1056.
47. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: A laboratory manual, 2nd ed. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
48. Scolnick E, Tompkins R, Caskey T, Nirenberg M. 1968. Release factors differing in specificity for terminator codons. Proc Natl Acad Sci USA 61:768-774.
49. Spedding G, 1990. Ribosomes and protein synthesis: A practical approach. Oxford: IRL.
50. Straub RF, Voyksner RD. 1993. Negative ion formation in electrospray mass spectrometry. J Am Soc Mass Spectrom 4:578-587.
51. Tate WP, Brown CM. 1992. Translational termination: "Stop" for protein synthesis or "pause" for regulation of gene expression. Biochemistry 31:2443-2450.
52. Tate WP, Caskey CT. 1990. Termination in protein synthesis. In: Spedding G, ed. Ribosomes and protein synthesis: A practical approach. Oxford: IRL. pp 81-100.
53. Tate WP, Dognin MJ, Noah M, Stöffler-Meilicke M, Stöffler G. 1984. The NH2-terminal domain of Escherichia coli ribosomal protein L11. Its three-dimensional location and its role in the binding of release factors 1 and 2. J Biol Chem 259:7317-7324.
54. Tate WP, McCaughan KK, Ward CD, Sumpter VG, Trotman CNA, Stöffler-Meilicke M, Maly P, Brimacombe R. 1986. The ribosomal binding domain of the Escherichia coli release factors. Modification of tyrosine in the N-terminal domain of ribosomal protein L11 affects release factors 1 and 2 differentially. J Biol Chem 261:2289-2293.
55. Tate WP, Schulze H, Nierhaus KH. 1983. The Escherichia coli ribosomal protein L11 suppresses release factor 2 but promotes the release factor 1 activities in peptide chain termination. J Biol Chem 258:12810-12815.
56. Uno M, Ito K, Nakamura Y. 1996. Functional specificity of amino acid at position 246 in the tRNA mimicry domain of bacterial release factor 2. Biochimie 78:935-943.
57. Yanofsky C, Horn V, Nakamura Y. 1996. Loss of overproduction of polypeptide release factor 3 influences expression of the tryptophanase operon of Escherichia coli. J Bacteriol 178:3755-3762.
58. Zhouravleva G, Frolova L, Le Goff X, Le Guellec R, Inge-Vechtomov S, Kisselev L, Philippe M. 1995. Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3. EMBO J 14:4065-4072.