Phylogenetic position of the parasitoid nanoflagellate Pirsonia inferred from nuclear-encoded small subunit ribosomal DNA and a description of Pseudopirsonia n. gen. and Pseudopirsonia mucosa (Drebes) comb. nov.

Protist

Volumn 155, Issue 2, 2004, Pages 143-156

  Kühn, Stefanie ^a   Medlin, Linda ^b   Eller, Gundula ^c  

^a UNIVERSITY OF BREMEN   (Germany)

^b ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

^c MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CERCOMONAS; CERCOZOA; DIADEMA; HETEROMITA GLOBOSA; HYPHOCHYTRIUM; HYPHOCHYTRIUM CATENOIDES; PIRSONIA; PIRSONIA DIADEMA; PIRSONIA FORMOSA; PIRSONIA GUINARDIAE; PIRSONIA MUCOSA; PIRSONIA PUNCTIGERAE; PIRSONIA VERRUCOSA; PROTOZOA; PSEUDOPIRSONIA; PSEUDOPIRSONIA MUCOSA; STRAMENOPILES;

EID: 3142520136     PISSN: 14344610     EISSN: None     Source Type: Journal    
DOI: 10.1078/143446104774199556     Document Type: Article

References (40)

1. Beardsley C, Pernthaler J, Wosniok W, Amman R (2003) Are readily culturable bacteria in coastal North Sea waters suppressed by selective grazing mortality? Appl Environ Microbiol 69: 2624-2630
2. Bulman SR, Kühn SF, Marshall JW, Schnepf E (2001) A phylogenetic analysis of the SSU rRNA from members of the Plasmodiophorida and Phagomyxida. Protist 152: 43-51
3. Cavalier-Smith, T (1998) A revised six-kingdom system of life. Biol Rev 73: 203-266
4. Coats DW, Park MG (2002) Parasitism of photosynthetic dinoflagellates by three strains of Amoebophrya (Dinophyta): parasite survival, infectivity, generation time, and host specificity. J Phycol 38: 520-528
5. Cooney EW, Barr DJS, Barstow WE (1985) The ultrastructure of the zoospore of Hyphochytrium catenoides. Can J Bot 63: 497-505
6. Díez B, Pedrós-Alió C, Massana R (2001) Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing. Appl Environm Microbiol 67: 2932-2941
7. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12: 13-15
8. Drebes G (1966) Ein parasitischer Phycomycet (Lagenidiales) in Coscinodiscus. Helgoländer wiss Meeresunters 13: 426-435
9. Drebes G, Schnepf E (1988) Paulsenella Chatton (Dinophyta), ectoparasites of marine diatoms: development and taxonomy. Helgoländer Meeresunters 42: 563-581
10. Drebes G, Schnepf E (1998) Gyrodinium undulans Hulburt, a marine dinoflagellate feeding on the bloom-forming diatom Odontella aurita, and on copepod and rotifer eggs. Helgoländer Meeresunters 52: 1-14
11. Felsenstein J (1978) Cases in which parsimony and compatibility methods will be positively misleading. Syst Zool 27: 27-33
12. Felsenstein J (1981) Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17: 368-376
13. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791
14. Fuller MS (1990) Hyphochytriomycota. In Margulis L, Corliss JO, Melkonian M, Chapman DJ (eds) Handbook of Protoctista. Jones and Bartlett, Boston, pp 380-387
15. Grahame ES (1976) The occurrence of Lagenisma coscinodisci in Palmeria hardmaniana from Kingston Harbour, Jamaica. Br phycol J 11: 57-61
16. Gunderson HJ, John SA, Boman WC, Coats DW (2002) Multiple strains of the parasitic dinoflagellate Amoebophrya exist in Chesapeake Bay. J Eukaryot Microbiol 49: 469-474
17. Hall TA (1999) T. A. Hall. BioEdit: a user-friendly biological sequence alignement editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98
18. Janson S, Gisselson L-Å, Salomon PS, Granéli E (2000) Evidence for multiple species within the endoparasitic dinoflagellate Amoebophrya ceratii as based on 18S rRNA gene-sequence analysis. Parasitol Res 86: 929-933
19. Jukes TH, Cantor CR (1969) Evolution of Protein Molecules. In Munro HN (ed) Mammalian Protein Metabolism. Academic Press, New York, pp 21-132
20. Karpov SA (1997) Cercomonads and their relationship to the myxomycetes. Arch Protistenkd 148: 297-307
21. Kühn SF, Drebes G, Schnepf E (1996) Five new species of the nanoflagellate Pirsonia in the German Bight, North Sea, feeding on planktic diatoms. Helgoländer Meeresunters 50: 205-222
22. Kühn SF, Lange M, Medlin LK (2000) Phylogenetic position of Cryothecomonas inferred from nuclear-encoded small subunit ribosomal RNA. Protist 151: 337-345
23. Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar A, Buchner A, Gerber S, Ginhart AW, Gross S, Grunmann S, Hermann S, Jost R, König A, Liss T, May M, Reichel B, Strehlow R, Stamatakis AP, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer K-H (in press) ARB: A software environment for sequence data. Nucleic Acids Research
24. MacDonald CM, Darbyshire JF, Ogden CC (1977) The morphology of a common soil flagellate, Heteromita globosa STEIN (Mastigophorea: Protozoa). Bull Brit Mus (Natur Hist) Zool 31: 255-264
25. Massana R, Guillou L, Díez B, Pedrós-Alió C (2002) Unveiling the organisms behind novel eukaryotic ribosomal DNA sequences from the ocean. Appl Environ Microbiol 68: 4554-4558
26. Medlin LK, Elwood HJ, Stickel S, Sogin ML (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491-499
27. Moon-van der Staay S-Y, de Wachter R, Vaulot D (2003) Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409: 607-610
28. Norén F, Moestrup O, Rehnstam-Holm AS (1999) Parvilucifera infectans Norén et Moestrup gen. et sp. nov. (Perkinsozoa phylum nov.): a parasitic flagellate capable of killing toxic microalgae. Europ J Protistol 35: 233-254
29. Olsen G J, Matsuda H, Hagstrom R, and Overbeek R (1994) fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10: 41-48
30. Patterson DJ (1989) Stramenopiles: Chromophytes from a Protistan Perspective. In Green JC, Landbeater BSC, Divers WL (eds) The Chromophyte Algae: Problems and Perspectives. Clarendon, Oxford, pp 357-379
31. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425
32. Schnepf E (1994) Light and electron microscopical observations in Rhynchopus coscinodiscivorus sp.nov., a colourless, phagotrophic euglenozoon with concealed flagella. Arch Protistenkd 144: 63-74
33. Schnepf E, Drebes G, Elbrächter M (1990) Pirsonia guinardiae, gen. et spec. nov.: A parasitic flagellate on the marine diatom Guinardia flaccida with an unusual mode of food uptake. Helgoländer Meeresunters 44: 275-293
34. Schnepf E, Kühn SF (2000) Food uptake and fine structure of Cryothecomonas longipes spec. nov., a marine nanoflagellate incertae sedis feeding phagotrophically on large diatoms. Helgol Mar Res 54: 18-32
35. Schnepf E, Schweikert M (1996) Pirsonia, phagotrophic nanoflagellates incertae sedis, feeding on marine diatoms: attachment, fine structure and taxonomy. Arch Protistenkd 147: 361-371
36. Schweikert M, Schnepf E (1996) Pseudaphelidium drebesii, gen. et sp. nov. (incerta sedis), a parasite of the marine centric diatom Thalassiosira punctigera. Arch Protistenkd 147: 11-17
37. Schweikert M, Schnepf E (1997) Light and electron microspical observations on Pirsonia punctigerae spec. nov., a nanoflagellate feeding on the marine centric diatom Thalassiosira punctigera. Europ J Protistol 33: 168-177
38. Sparrow jr. FK (1960) Aquatic Phycomycetes (2nd ed) Ann Arbor, The University of Michigan Press
39. Tillmann U, Hesse K-J, Tillmann A (1999) Large-scale parasitic infection of diatoms in the Northfrisian Wadden Sea. J Sea Res 42: 255-261
40. Thomsen HA, Bolt PA, Garrison DI (1991) Fine structure and biology of Cryothecomonas gen. nov. (Protista incerta sedis) from ice biota. Can J Zool 69: 1048-1070