메뉴 건너뛰기




Volumn 67, Issue 7, 2001, Pages 2932-2941

Study of Genetic Diversity of Eukaryotic Picoplankton in Different Oceanic Regions by Small-Subunit rRNA Gene Cloning and Sequencing

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RNA 18S; SEA WATER;

EID: 0035407646     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.67.7.2932-2941.2001     Document Type: Article
Times cited : (426)

References (50)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0027130098 scopus 로고
    • Ultrastructure and 18S rRNA gene sequence for Pelagomonas calceolata gen. et sp. nov. and the description of a new algal class, the Pelagophyceae classis nov.
    • Andersen, R. A., G. W. Saunders, M. P. Paskind, and J. P. Sexton. 1993. Ultrastructure and 18S rRNA gene sequence for Pelagomonas calceolata gen. et sp. nov. and the description of a new algal class, the Pelagophyceae classis nov. J. Phycol. 29:701-715.
    • (1993) J. Phycol. , vol.29 , pp. 701-715
    • Andersen, R.A.1    Saunders, G.W.2    Paskind, M.P.3    Sexton, J.P.4
  • 4
    • 0029730451 scopus 로고    scopus 로고
    • A comparison of HPLC pigment signatures and electron microscopic observations for oligotrophic waters of the North Atlantic and Pacific oceans
    • Andersen, R. A., R. R. Bidigare, M. D. Keller, and M. Latasa. 1996. A comparison of HPLC pigment signatures and electron microscopic observations for oligotrophic waters of the North Atlantic and Pacific oceans. Deep-Sea Res. II 43:517-537.
    • (1996) Deep-Sea Res. II , vol.43 , pp. 517-537
    • Andersen, R.A.1    Bidigare, R.R.2    Keller, M.D.3    Latasa, M.4
  • 5
    • 0033035785 scopus 로고    scopus 로고
    • Picoplankton and nanoplankton and their trophic coupling in the surface waters of the Sargasso Sea south of Bermuda
    • Caron, D. A., E. R. Peele, E. L. Lim, and M. R. Dennett. 1999. Picoplankton and nanoplankton and their trophic coupling in the surface waters of the Sargasso Sea south of Bermuda. Limnol. Oceanogr. 44:259-272.
    • (1999) Limnol. Oceanogr. , vol.44 , pp. 259-272
    • Caron, D.A.1    Peele, E.R.2    Lim, E.L.3    Dennett, M.R.4
  • 6
    • 0002274206 scopus 로고
    • Eukaryote gene numbers, non-coding DNA and genome size
    • T. Cavalier-Smith (ed.). Wiley, Chichester, United Kingdom
    • Cavalier-Smith, T. 1985. Eukaryote gene numbers, non-coding DNA and genome size, p. 69-103. In T. Cavalier-Smith (ed.), The evolution of genome size. Wiley, Chichester, United Kingdom.
    • (1985) The Evolution of Genome Size , pp. 69-103
    • Cavalier-Smith, T.1
  • 8
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89:5685-5689.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 9
    • 0035403492 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques
    • Díez, B., C. Pedrós-Alió, T. L. Marsh, and R. Massana. 2001. Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques. Appl. Environ. Microbiol. 67:2942-2951.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2942-2951
    • Díez, B.1    Pedrós-Alió, C.2    Marsh, T.L.3    Massana, R.4
  • 10
    • 0002873539 scopus 로고
    • The ecology of heterotrophic microflagellates
    • Fenchel, T. 1986. The ecology of heterotrophic microflagellates. Adv. Microb. Ecol. 9:57-97.
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 57-97
    • Fenchel, T.1
  • 11
    • 0028993627 scopus 로고
    • Some comments on picoplankton and its importance in the pelagic ecosystem
    • Fogg, G. E. 1995. Some comments on picoplankton and its importance in the pelagic ecosystem. Aquat. Microb. Ecol. 9:33-39.
    • (1995) Aquat. Microb. Ecol. , vol.9 , pp. 33-39
    • Fogg, G.E.1
  • 12
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature 356:148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 13
  • 14
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of the population parameters
    • Good, I. J. 1953. The population frequencies of species and the estimation of the population parameters. Biometrika 40:237-264.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 17
    • 84986736534 scopus 로고
    • Coccoid eukaryotic marine ultraplankters with four different HPLC pigment signatures
    • Hooks, C. E., R. R. Bidigare, M. D. Keller, and R. R. L. Guillard. 1988. Coccoid eukaryotic marine ultraplankters with four different HPLC pigment signatures. J. Phycol. 24:571-580.
    • (1988) J. Phycol. , vol.24 , pp. 571-580
    • Hooks, C.E.1    Bidigare, R.R.2    Keller, M.D.3    Guillard, R.R.L.4
  • 18
    • 0032416797 scopus 로고    scopus 로고
    • A comparison of phytoplankton populations of the Arabian Sea during the Spring Intermonsoon and Southwest Monsoon of 1995 as described by HPLC-analyzed pigments
    • Latasa, M., and R. R. Bidigare. 1998. A comparison of phytoplankton populations of the Arabian Sea during the Spring Intermonsoon and Southwest Monsoon of 1995 as described by HPLC-analyzed pigments. Deep-Sea Res. II 45:2133-2170.
    • (1998) Deep-Sea Res. II , vol.45 , pp. 2133-2170
    • Latasa, M.1    Bidigare, R.R.2
  • 19
    • 0030452031 scopus 로고    scopus 로고
    • 16S-like rDNA sequences from Developayella elegans, Labyrinthuloides haliotidis, and Proteromonas lacertae confirm that the stramenopiles are a primarily heterotrophic group
    • Leipe, D. D., S. M. Tong, C. L. Goggin, S. B. Slemenda, N. J. Pieniazek, and M. L. Sogin. 1996. 16S-like rDNA sequences from Developayella elegans, Labyrinthuloides haliotidis, and Proteromonas lacertae confirm that the stramenopiles are a primarily heterotrophic group. Eur. J. Protislol. 32:449-458.
    • (1996) Eur. J. Protislol. , vol.32 , pp. 449-458
    • Leipe, D.D.1    Tong, S.M.2    Goggin, C.L.3    Slemenda, S.B.4    Pieniazek, N.J.5    Sogin, M.L.6
  • 20
    • 0027329660 scopus 로고
    • Temporal variability of phytoplankton community structure at the U.S.-JGOFS time-series Station ALOHA (22°45′N, 158°00′W) based on HPLC pigment analysis
    • Letelier, R. M., R. R. Bidigare, D. V. Hebel, M. E. Ondrusek, C. D. Winn, and D. M. Karl. 1993. Temporal variability of phytoplankton community structure at the U.S.-JGOFS time-series Station ALOHA (22°45′N, 158°00′W) based on HPLC pigment analysis. Limnol. Oceanogr. 38:1420-1437.
    • (1993) Limnol. Oceanogr. , vol.38 , pp. 1420-1437
    • Letelier, R.M.1    Bidigare, R.R.2    Hebel, D.V.3    Ondrusek, M.E.4    Winn, C.D.5    Karl, D.M.6
  • 21
    • 0028163796 scopus 로고
    • Primary production of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: Measurements from flow cytometric sorting
    • Li, W. K. W. 1994. Primary production of prochlorophytes, cyanobacteria, and eucaryotic ultraphytoplankton: measurements from flow cytometric sorting. Limnol. Oceanogr. 39:169-175.
    • (1994) Limnol. Oceanogr. , vol.39 , pp. 169-175
    • Li, W.K.W.1
  • 22
    • 0027319339 scopus 로고
    • Application of rRNA-based probes for observing marine nanoplanktonic protists
    • Lim, E. L., L. A. Amaral, D. A. Caron, and E. F. DeLong. 1993. Application of rRNA-based probes for observing marine nanoplanktonic protists. Appl. Environ. Microbiol. 59:1647-1655.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1647-1655
    • Lim, E.L.1    Amaral, L.A.2    Caron, D.A.3    DeLong, E.F.4
  • 23
    • 0006483135 scopus 로고    scopus 로고
    • The ecology of Paraphysomonas imperforata based on studies employing oligonucleotide probe identification in coastal water samples and enrichment cultures
    • Lim, E. L., M. R. Dennet, and D. A. Caron. 1999. The ecology of Paraphysomonas imperforata based on studies employing oligonucleotide probe identification in coastal water samples and enrichment cultures. Limnol. Oceanogr. 44:37-51.
    • (1999) Limnol. Oceanogr. , vol.44 , pp. 37-51
    • Lim, E.L.1    Dennet, M.R.2    Caron, D.A.3
  • 24
  • 26
    • 0024241467 scopus 로고
    • The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions
    • Medlin, L., H. J. Elwood, S. Stickel, and M. L. Sogin. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71:491-499.
    • (1988) Gene , vol.71 , pp. 491-499
    • Medlin, L.1    Elwood, H.J.2    Stickel, S.3    Sogin, M.L.4
  • 27
    • 84986743885 scopus 로고
    • Further studies of presumedly primitive green algae, including the description of Pedinophyceae class. nov. and Resultor gen. nov.
    • Moestrup, Ø. 1991. Further studies of presumedly primitive green algae, including the description of Pedinophyceae class. nov. and Resultor gen. nov. J. Phycol. 27:119-133.
    • (1991) J. Phycol. , vol.27 , pp. 119-133
    • Moestrup, Ø.1
  • 28
    • 0033958038 scopus 로고    scopus 로고
    • Abundance and diversity of prymnesiophytes in the picoplankton community from the equatorial Pacific Ocean inferred from 18S rDNA sequences
    • Moon-van der Staay, S. Y., G. W. M. van der Staay, L. Guillou, D. Vaulot, H. Claustre, and L. K. Medlin. 2001. Abundance and diversity of prymnesiophytes in the picoplankton community from the equatorial Pacific Ocean inferred from 18S rDNA sequences. Limnol. Oceanogr. 45:98-109.
    • (2001) Limnol. Oceanogr. , vol.45 , pp. 98-109
    • Moon-van Der Staay, S.Y.1    Van Der Staay, G.W.M.2    Guillou, L.3    Vaulot, D.4    Claustre, H.5    Medlin, L.K.6
  • 29
    • 0035252376 scopus 로고    scopus 로고
    • Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity
    • Moon-van der Staay, S. Y., R. De Wachter, and D. Vaulot. Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity. Nature 409:607-610.
    • Nature , vol.409 , pp. 607-610
    • Moon-van Der Staay, S.Y.1    De Wachter, R.2    Vaulot, D.3
  • 30
    • 84988144314 scopus 로고
    • The distribution and abundance of phototrophic ultraplankton in the North Atlantic
    • Murphy, L. S., and E. M. Haugen. 1985. The distribution and abundance of phototrophic ultraplankton in the North Atlantic. Limnol. Oceanogr. 30:47-58.
    • (1985) Limnol. Oceanogr. , vol.30 , pp. 47-58
    • Murphy, L.S.1    Haugen, E.M.2
  • 31
    • 0001526699 scopus 로고
    • Phytoplankton analysis using flow cytometry
    • P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole (ed.). Lewis Publishers, Boca Raton, Fla
    • Olson, R. J., E. R. Zettler, and M. D. DuRand. 1993. Phytoplankton analysis using flow cytometry, p. 175-186. In P. F. Kemp, B. F. Sherr, E. B. Sherr, and J. J. Cole (ed.), Handbook of methods in aquatic microbial ecology. Lewis Publishers, Boca Raton, Fla.
    • (1993) Handbook of Methods in Aquatic Microbial Ecology , pp. 175-186
    • Olson, R.J.1    Zettler, E.R.2    DuRand, M.D.3
  • 33
    • 0031402948 scopus 로고    scopus 로고
    • Recent advances in the use of molecular techniques to assess the genetic diversity of marine photosynthetic microorganisms
    • Partensky, F., L. Guillou, N. Simon, and D. Vaulot. 1997. Recent advances in the use of molecular techniques to assess the genetic diversity of marine photosynthetic microorganisms. Vie Milieu 47:367-374.
    • (1997) Vie Milieu , vol.47 , pp. 367-374
    • Partensky, F.1    Guillou, L.2    Simon, N.3    Vaulot, D.4
  • 34
    • 0000446465 scopus 로고
    • Stramenopiles: Chromophytes from a protistan perspective
    • J. C. Green, B. S. C. Leadbeater, and W. L. Diver (ed.). Clarendon Press, Oxford, United Kingdom
    • Patterson, D. J. 1989. Stramenopiles: chromophytes from a protistan perspective, p. 357-379. In J. C. Green, B. S. C. Leadbeater, and W. L. Diver (ed.), Chromophyte algae: problems and perspectives. Clarendon Press, Oxford, United Kingdom.
    • (1989) Chromophyte Algae: Problems and Perspectives , pp. 357-379
    • Patterson, D.J.1
  • 35
    • 0019945588 scopus 로고
    • Fluorometric determination of DNA in aquatic microorganisms by use of Hoechst 33258
    • Paul, J. H., and B. Myers. 1982. Fluorometric determination of DNA in aquatic microorganisms by use of Hoechst 33258. Appl. Environ. Microbiol. 43:1393-1399.
    • (1982) Appl. Environ. Microbiol. , vol.43 , pp. 1393-1399
    • Paul, J.H.1    Myers, B.2
  • 36
    • 0030933757 scopus 로고    scopus 로고
    • Photosynthetic pigment fingerprints as indicators of phytoplankton biomass and development in different water masses of the Southern Ocean during austral spring
    • Peeken, I. 1997. Photosynthetic pigment fingerprints as indicators of phytoplankton biomass and development in different water masses of the Southern Ocean during austral spring. Deep-Sea Res. II 44:261-282.
    • (1997) Deep-Sea Res. II , vol.44 , pp. 261-282
    • Peeken, I.1
  • 37
    • 84986870589 scopus 로고
    • The use of DAPI for identifying and counting aquatic microflora
    • Porter, K. G., and Y. S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25:943-948.
    • (1980) Limnol. Oceanogr. , vol.25 , pp. 943-948
    • Porter, K.G.1    Feig, Y.S.2
  • 38
    • 0030621061 scopus 로고    scopus 로고
    • Convergent evolution masks extensive biodiversity among marine coccoid picoplankton
    • Potter, D., T. C. Lajeunesse, G. W. Saunders, and R. A. Andersen. 1997. Convergent evolution masks extensive biodiversity among marine coccoid picoplankton. Biodivers. Conserv. 6:99-107.
    • (1997) Biodivers. Conserv. , vol.6 , pp. 99-107
    • Potter, D.1    Lajeunesse, T.C.2    Saunders, G.W.3    Andersen, R.A.4
  • 39
    • 0031964656 scopus 로고    scopus 로고
    • Phylogenetic diversity of ultraplankton plastid small-subunit rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States
    • Rappé, M. S., M. T. Suzuki, K. L. Vergin, and S. J. Giovannoni. 1998. Phylogenetic diversity of ultraplankton plastid small-subunit rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States. Appl. Environ Microbiol. 64:294-303.
    • (1998) Appl. Environ Microbiol. , vol.64 , pp. 294-303
    • Rappé, M.S.1    Suzuki, M.T.2    Vergin, K.L.3    Giovannoni, S.J.4
  • 40
    • 0001584709 scopus 로고
    • Biochemistry of the dinoflagellate nucleus
    • F. J. R. Taylor (ed.). Blackwell Scientific. Oxford, United Kingdom
    • Rizzo, P. J. 1985. Biochemistry of the dinoflagellate nucleus, p. 143-173. In F. J. R. Taylor (ed.), The biology of dinoflagellates. Blackwell Scientific. Oxford, United Kingdom.
    • (1985) The Biology of Dinoflagellates , pp. 143-173
    • Rizzo, P.J.1
  • 41
    • 0033914764 scopus 로고    scopus 로고
    • Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting
    • Schauer, M., R. Massana, and C. Pedrós-Alió. 2000. Spatial differences in bacterioplankton composition along the Catalan coast (NW Mediterranean) assessed by molecular fingerprinting. FEMS Microbiol. Ecol. 33:51-59.
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 51-59
    • Schauer, M.1    Massana, R.2    Pedrós-Alió, C.3
  • 42
    • 0031429591 scopus 로고    scopus 로고
    • Heterotrophic protists in the Central Arctic Ocean
    • Sherr, E. B., B. F. Sherr, and L. Fessenden. 1997. Heterotrophic protists in the Central Arctic Ocean. Deep-Sea Res. II 44:1665-1682.
    • (1997) Deep-Sea Res. II , vol.44 , pp. 1665-1682
    • Sherr, E.B.1    Sherr, B.F.2    Fessenden, L.3
  • 43
    • 84986841026 scopus 로고
    • Pelagic ecosystem structure: Heterotrophic compartments of the plankton and their relationship to plankton size fractions
    • Sieburth, J. M., V. Smelacek, and J. Lenz. 1978. Pelagic ecosystem structure: heterotrophic compartments of the plankton and their relationship to plankton size fractions. Limnol. Oceanogr. 23:1256-1263.
    • (1978) Limnol. Oceanogr. , vol.23 , pp. 1256-1263
    • Sieburth, J.M.1    Smelacek, V.2    Lenz, J.3
  • 44
    • 0028188260 scopus 로고
    • Characterization of oceanic photosynthetic picoeukaryotes by flow cytometry
    • Simon, N., R. G. Barlow, D. Marie, F. Partensky, and D. Vaulot. 1994. Characterization of oceanic photosynthetic picoeukaryotes by flow cytometry. J. Phycol. 30:922-935.
    • (1994) J. Phycol. , vol.30 , pp. 922-935
    • Simon, N.1    Barlow, R.G.2    Marie, D.3    Partensky, F.4    Vaulot, D.5
  • 45
    • 0029014847 scopus 로고
    • Fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes to identify small phytoplankton by flow cytometry
    • Simon, N., N. LeBot, D. Marie, F. Partensky, and D. Vaulot. 1995. Fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes to identify small phytoplankton by flow cytometry. Appl. Environ. Microbiol. 61:2506-2513.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2506-2513
    • Simon, N.1    LeBot, N.2    Marie, D.3    Partensky, F.4    Vaulot, D.5
  • 46
    • 0002211974 scopus 로고
    • Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies
    • A. D. L. Akkermans. J. D. van Elsas, and F. J. de Bruijn (ed.), vol. 3.1.1. Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Stackebrandt, E., and F. A. Rainey. 1995. Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies, p. 1-17. In A. D. L. Akkermans. J. D. van Elsas, and F. J. de Bruijn (ed.), Molecular microbial ecology manual, vol. 3.1.1. Kluwer Academic Publishers, Dordrecht, The Netherlands.
    • (1995) Molecular Microbial Ecology Manual , pp. 1-17
    • Stackebrandt, E.1    Rainey, F.A.2
  • 47
    • 0001510478 scopus 로고
    • A survey of the smallest eukaryotic organisms of the marine phytoplankton
    • Thomsen, H. A. 1986. A survey of the smallest eukaryotic organisms of the marine phytoplankton. Can. Bull. Fish. Aquat. Sci. 214:121-158.
    • (1986) Can. Bull. Fish. Aquat. Sci. , vol.214 , pp. 121-158
    • Thomsen, H.A.1
  • 48
    • 0031445038 scopus 로고    scopus 로고
    • Heterotrophic flagellates and other protists from Southampton Water, U.K.
    • Tong, S. M. 1997. Heterotrophic flagellates and other protists from Southampton Water, U.K. Ophelia 47:71-131.
    • (1997) Ophelia , vol.47 , pp. 71-131
    • Tong, S.M.1
  • 49
    • 0031960173 scopus 로고    scopus 로고
    • Revealing genetic diversity of eukaryotic microorganisms in aquatic environments by denaturing gradient gel electrophoresis
    • Van Hannen, E. J., M. P. Van Agterveld, H. J. Gons, and H. J. Laanbroek. 1998. Revealing genetic diversity of eukaryotic microorganisms in aquatic environments by denaturing gradient gel electrophoresis. J. Phycol. 34:206-213.
    • (1998) J. Phycol. , vol.34 , pp. 206-213
    • Van Hannen, E.J.1    Van Agterveld, M.P.2    Gons, H.J.3    Laanbroek, H.J.4
  • 50
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • Von Wintzingerode, F., U. B. Goebel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • Von Wintzingerode, F.1    Goebel, U.B.2    Stackebrandt, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.