메뉴 건너뛰기




Volumn 8, Issue 4, 2005, Pages 271-278

Genomic divergence of Escherichia coli strains: Evidence for horizontal transfer and variation in mutation rates

Author keywords

Escherichia coli strains; Evolution rates; Experimental evolution; Horizontal gene transfer; Molecular evolution

Indexed keywords

ESCHERICHIA COLI; ESCHERICHIA COLI B; SHIGELLA FLEXNERI; SHIGELLA FLEXNERI 2A;

EID: 31144444027     PISSN: 11396709     EISSN: 16181905     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (28)

References (36)
  • 2
    • 0033878587 scopus 로고    scopus 로고
    • Linking genetic change to community evolution: Insights from studies of bacteria and bacteriophage
    • Bohannan BJM, Lenski RE (2000) Linking genetic change to community evolution: insights from studies of bacteria and bacteriophage. Ecol Lett 3:362-377
    • (2000) Ecol Lett , vol.3 , pp. 362-377
    • Bohannan, B.J.M.1    Lenski, R.E.2
  • 3
    • 85147956451 scopus 로고    scopus 로고
    • DNA repair and mutators: Effects on antigenic variation and virulence of bacterial pathogens
    • Brogden KA (ed). ASM Press, Washington, DC
    • Cebula TA, LeClerc JE (2000) DNA repair and mutators: effects on antigenic variation and virulence of bacterial pathogens. In: Brogden KA (ed) Virulence mechanisms of bacterial pathogens. ASM Press, Washington, DC, pp 143-159
    • (2000) Virulence Mechanisms of Bacterial Pathogens , pp. 143-159
    • Cebula, T.A.1    LeClerc, J.E.2
  • 4
    • 0037417962 scopus 로고    scopus 로고
    • Parallel changes in gene expression after 20,000 generations of evolution in E. coli
    • USA
    • Cooper TF, Rozen DE, Lenski RE (2003) Parallel changes in gene expression after 20,000 generations of evolution in E. coli. Proc Natl Acad Sci USA 100:1072-1077
    • (2003) Proc Natl Acad Sci , vol.100 , pp. 1072-1077
    • Cooper, T.F.1    Rozen, D.E.2    Lenski, R.E.3
  • 6
    • 0025886466 scopus 로고
    • A constant rate of spontaneous mutation in DNA-based microbes
    • USA
    • Drake JW (1991) A constant rate of spontaneous mutation in DNA-based microbes. Proc Natl Acad Sci USA 88:7160-7164
    • (1991) Proc Natl Acad Sci , vol.88 , pp. 7160-7164
    • Drake, J.W.1
  • 7
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • Dykhuizen DE, Green L (1991) Recombination in Escherichia coli and the definition of biological species. J Bacteriol 173:7257-7268
    • (1991) J Bacteriol , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 8
    • 0028605344 scopus 로고
    • Clonal divergence in Escherichia coli as a result of recombination, not mutation
    • Guttman DS, Dykhuizen DE (1994) Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science 266:1380-1383
    • (1994) Science , vol.266 , pp. 1380-1383
    • Guttman, D.S.1    Dykhuizen, D.E.2
  • 9
    • 0025096192 scopus 로고
    • Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli
    • Herzer PJ, Inouye S, Inouye M, Whittam TS (1990) Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. J Bacteriol 172:6175-6181
    • (1990) J Bacteriol , vol.172 , pp. 6175-6181
    • Herzer, P.J.1    Inouye, S.2    Inouye, M.3    Whittam, T.S.4
  • 12
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinf 5:150-163
    • (2004) Brief Bioinf , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 13
    • 0029860724 scopus 로고    scopus 로고
    • High mutation frequencies among Escherichia coli and Salmonella pathogens
    • LeClerc JE, Li B, Payne WL, Cebula TA(1996) High mutation frequencies among Escherichia coli and Salmonella pathogens. Science 274:1208-1211
    • (1996) Science , vol.274 , pp. 1208-1211
    • LeClerc, J.E.1    Li, B.2    Payne, W.L.3    Cebula, T.A.4
  • 14
    • 1842472689 scopus 로고    scopus 로고
    • Phenotypic and genomic evolution during a 20,000-generation experiment with the bacterium Escherichia coli
    • Lenski RE (2004) Phenotypic and genomic evolution during a 20,000-generation experiment with the bacterium Escherichia coli. Plant Breed Rev 24:225-265
    • (2004) Plant Breed Rev , vol.24 , pp. 225-265
    • Lenski, R.E.1
  • 15
    • 0037381428 scopus 로고    scopus 로고
    • Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generations
    • Lenski RE, Winkworth CL, Riley MA (2003) Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generations. J Mol Evol 56:498-508
    • (2003) J Mol Evol , vol.56 , pp. 498-508
    • Lenski, R.E.1    Winkworth, C.L.2    Riley, M.A.3
  • 18
    • 0030807132 scopus 로고    scopus 로고
    • Recombination and population structure in Escherichia coli
    • Milkman R (1997) Recombination and population structure in Escherichia coli. Genetics 146:745-750
    • (1997) Genetics , vol.146 , pp. 745-750
    • Milkman, R.1
  • 19
    • 0013596021 scopus 로고
    • The guanine and cytosine content of genomic DNA and bacterial evolution
    • USA
    • Muto A, Osawa S (1987) The guanine and cytosine content of genomic DNA and bacterial evolution. Proc Natl Acad Sci USA 84:166-169
    • (1987) Proc Natl Acad Sci , vol.84 , pp. 166-169
    • Muto, A.1    Osawa, S.2
  • 20
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 25
    • 0031004145 scopus 로고    scopus 로고
    • Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies
    • Pupo GM, Karaolis DKR, Lan R, Reeves PR (1997) Evolutionary relationships among pathogenic and nonpathogenic Escherichia coli strains inferred from multilocus enzyme electrophoresis and mdh sequence studies. Infect Immun 65:2685-2692
    • (1997) Infect Immun , vol.65 , pp. 2685-2692
    • Pupo, G.M.1    Karaolis, D.K.R.2    Lan, R.3    Reeves, P.R.4
  • 26
    • 0024469392 scopus 로고
    • The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants
    • Rayssiguier C, Thaler DS, Radman M (1989) The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants. Nature 342:396-401
    • (1989) Nature , vol.342 , pp. 396-401
    • Rayssiguier, C.1    Thaler, D.S.2    Radman, M.3
  • 27
    • 0041625721 scopus 로고    scopus 로고
    • Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature
    • Riehle MR, Bennett AF, Lenski RE, Long AD (2003) Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature. Physiol Genomics 14:47-58
    • (2003) Physiol Genomics , vol.14 , pp. 47-58
    • Riehle, M.R.1    Bennett, A.F.2    Lenski, R.E.3    Long, A.D.4
  • 28
    • 19044384376 scopus 로고    scopus 로고
    • Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers
    • Schneider D, Duperchy E, Depeyrot J, Coursange E, Lenski RE, Blot M (2002) Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers. BMC Microbiol 2:18.
    • (2002) BMC Microbiol , vol.2 , pp. 18
    • Schneider, D.1    Duperchy, E.2    Depeyrot, J.3    Coursange, E.4    Lenski, R.E.5    Blot, M.6
  • 29
    • 0023274170 scopus 로고
    • The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
    • Sharp PM, Li WH (1987) The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol Biol Evol 4:222-230
    • (1987) Mol Biol Evol , vol.4 , pp. 222-230
    • Sharp, P.M.1    Li, W.H.2
  • 30
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp PM, Li WH (1987) The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucl Acids Res 15:1281-1295
    • (1987) Nucl Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 32
    • 0027453388 scopus 로고
    • Simple methods for testing the molecular evolutionary clock hypothesis
    • Tajima F (1993) Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135:599-607
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 33
    • 0021716351 scopus 로고
    • Estimation of evolutionary distance between nucleotide sequences
    • Tajima F, Nei M (1984) Estimation of evolutionary distance between nucleotide sequences. Mol Biol Evol 1:269-285
    • (1984) Mol Biol Evol , vol.1 , pp. 269-285
    • Tajima, F.1    Nei, M.2
  • 34
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 24:4876-4882
    • (1997) Nucl Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.