메뉴 건너뛰기




Volumn 28, Issue 4, 2005, Pages 645-653

Patterns of molecular evolution in pathogenesis-related proteins

Author keywords

Maximum likelihood methods; Molecular variability; Pathogenesis related proteins; Positive selection; PRs

Indexed keywords

NUCLEOTIDE; PATHOGENESIS RELATED PROTEINS; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

EID: 31044438484     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/S1415-47572005000500001     Document Type: Article
Times cited : (23)

References (28)
  • 2
    • 0034897709 scopus 로고    scopus 로고
    • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
    • Anisimova M, Bielawski JP and Yang Z (2001) Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol Biol Evol 18:1585-1592.
    • (2001) Mol Biol Evol , vol.18 , pp. 1585-1592
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 3
    • 0036272936 scopus 로고    scopus 로고
    • Accuracy and power of Bayes prediction of amino acid sites under positive selection
    • Anisimova M, Bielawski JP and Yang Z (2002) Accuracy and power of Bayes prediction of amino acid sites under positive selection. Mol Biol Evol 19:950-958.
    • (2002) Mol Biol Evol , vol.19 , pp. 950-958
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 4
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch A and Apweiler R (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucl Ac Res 28:45-48.
    • (2000) Nucl Ac Res , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 6
    • 0034625046 scopus 로고    scopus 로고
    • Repid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution
    • Bishop JG, Dean AM and Mitchell-Olds T (2000) Repid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution. Proc Natl Acad Sci USA 97:5322-5327.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 5322-5327
    • Bishop, J.G.1    Dean, A.M.2    Mitchell-Olds, T.3
  • 8
    • 0027457706 scopus 로고
    • SRS - An indexing and retrieval tool for flat file data libraries
    • Etzold T and Argos P (1993) SRS - An indexing and retrieval tool for flat file data libraries. Comp Appl Biosc 9:49-57.
    • (1993) Comp Appl Biosc , vol.9 , pp. 49-57
    • Etzold, T.1    Argos, P.2
  • 9
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H and Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 12
    • 0031972161 scopus 로고    scopus 로고
    • Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
    • Nielsen R and Yang Z (1998) Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148:929-936.
    • (1998) Genetics , vol.148 , pp. 929-936
    • Nielsen, R.1    Yang, Z.2
  • 13
    • 0036017858 scopus 로고    scopus 로고
    • Innate immunity in plants and animals: Emerging parallels between the recognition of general elicitors and pathogen-associated molecular patterns
    • Nürnberger T and Brunner F (2002) Innate immunity in plants and animals: Emerging parallels between the recognition of general elicitors and pathogen-associated molecular patterns. Curr Op Plant Biol 5:318-324.
    • (2002) Curr Op Plant Biol , vol.5 , pp. 318-324
    • Nürnberger, T.1    Brunner, F.2
  • 14
    • 0344824014 scopus 로고    scopus 로고
    • Convergent neo-functionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene
    • Rodríguez-Trelles F, Tarrío R and Ayala FJ (2001) Convergent neo-functionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene. Proc Nat Acad Sci 100: 13413-13417.
    • (2001) Proc Nat Acad Sci , vol.100 , pp. 13413-13417
    • Rodríguez-Trelles, F.1    Tarrío, R.2    Ayala, F.J.3
  • 15
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M and von Haeseler A (2002) TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 16
    • 1942533483 scopus 로고    scopus 로고
    • False-positive selection identified by ML-based methods: Examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus
    • Suzuki Y and Nei M (2002) False-positive selection identified by ML-based methods: Examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. Mol Biol.Evol 21:914-921.
    • (2002) Mol Biol.Evol , vol.21 , pp. 914-921
    • Suzuki, Y.1    Nei, M.2
  • 17
    • 0036855372 scopus 로고    scopus 로고
    • Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites
    • Suzuki Y and Nei M (2004) Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites. Mol Biol Evol 19:1865-1869.
    • (2004) Mol Biol Evol , vol.19 , pp. 1865-1869
    • Suzuki, Y.1    Nei, M.2
  • 18
    • 0036182848 scopus 로고    scopus 로고
    • Positive Darwinian selection promotes heterogeneity among members of the anti-freeze protein multigene family
    • Swanson WJ and Aquadro CF (2002) Positive Darwinian selection promotes heterogeneity among members of the anti-freeze protein multigene family. J Mol Evol 54:403-410.
    • (2002) J Mol Evol , vol.54 , pp. 403-410
    • Swanson, W.J.1    Aquadro, C.F.2
  • 19
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F and Higgins DG (1997) The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Ac Res 24:4876-4882.
    • (1997) Nucl Ac Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 20
    • 0033179482 scopus 로고    scopus 로고
    • The families of pathogenesis-related proteins, their activities, and comparative analysis of PR-1 type proteins
    • Van Loon LC and van Strien EA (1999) The families of pathogenesis-related proteins, their activities, and comparative analysis of PR-1 type proteins. Physiol Mol Plant Pathol 55:85-97.
    • (1999) Physiol Mol Plant Pathol , vol.55 , pp. 85-97
    • Van Loon, L.C.1    van Strien, E.A.2
  • 21
    • 0031805986 scopus 로고    scopus 로고
    • Statistical tests of neutrality in the age of weak selection
    • Wayne ML and Simonsen KL (1998) Statistical tests of neutrality in the age of weak selection. Tr Ecol Evol 13:236-240.
    • (1998) Tr Ecol Evol , vol.13 , pp. 236-240
    • Wayne, M.L.1    Simonsen, K.L.2
  • 22
    • 0037370306 scopus 로고    scopus 로고
    • Molecular evolution meets the genomics revolution
    • Wolfe KH and Li W-H (2003) Molecular evolution meets the genomics revolution. Nature Genet 33(suppl.):255-265.
    • (2003) Nature Genet , vol.33 , Issue.SUPPL. , pp. 255-265
    • Wolfe, K.H.1    Li, W.-H.2
  • 23
    • 8544225780 scopus 로고    scopus 로고
    • Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites
    • Wong WSW, Yang Z, Goldman N and Nielsen R (2004) Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites. Genetics 168:1041-1051.
    • (2004) Genetics , vol.168 , pp. 1041-1051
    • Wong, W.S.W.1    Yang, Z.2    Goldman, N.3    Nielsen, R.4
  • 25
    • 0001050687 scopus 로고    scopus 로고
    • Adaptive molecular evolution
    • Bishop M and Cannings C (eds) Wiley, New York
    • Yang Z (2001) Adaptive molecular evolution. In: Bishop M and Cannings C (eds) Handbook of Statistical Genetics. Wiley, New York, pp 327-350.
    • (2001) Handbook of Statistical Genetics , pp. 327-350
    • Yang, Z.1
  • 26
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • Yang Z and Nielsen R (2002) Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol Biol Evol 19:908-917.
    • (2002) Mol Biol Evol , vol.19 , pp. 908-917
    • Yang, Z.1    Nielsen, R.2
  • 27
    • 0036134765 scopus 로고    scopus 로고
    • Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes
    • Yang Z and Swanson WJ (2002) Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes. Mol Biol Evol 19:49-57.
    • (2002) Mol Biol Evol , vol.19 , pp. 49-57
    • Yang, Z.1    Swanson, W.J.2
  • 28
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang Z, Nielsen R, Goldman N and Pedersen AMK (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.