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Volumn 27, Issue 4, 2005, Pages 329-335

cSNP mining from full-length enriched cDNA libraries of the Korean Native Pig

Author keywords

ESTs; Full length cDNA libraries; Korean native pig; SNPs

Indexed keywords

SUS SCROFA;

EID: 30844467774     PISSN: 02545934     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (5)

References (48)
  • 4
    • 0037384774 scopus 로고    scopus 로고
    • Mapping of porcine ESTs obtained from anterior pituitary
    • Bertani GR, Johnson RK, Robic A and Pomp D (2003) Mapping of porcine ESTs obtained from anterior pituitary. Animal Genet. 34: 132-134.
    • (2003) Animal Genet. , vol.34 , pp. 132-134
    • Bertani, G.R.1    Johnson, R.K.2    Robic, A.3    Pomp, D.4
  • 6
    • 0037245672 scopus 로고    scopus 로고
    • Generation and sequence characterization of a normalized cDNA library from swine ovarian follicles
    • Caetano AR, Johnson RK and Pomp D (2003) Generation and sequence characterization of a normalized cDNA library from swine ovarian follicles. Mamm. Genome: 65-70.
    • (2003) Mamm. Genome , pp. 65-70
    • Caetano, A.R.1    Johnson, R.K.2    Pomp, D.3
  • 9
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidium thiocyanate phenol-chloroform extraction
    • Chomczynski P and Sacchi N (1987) Single-step method of RNA isolation by acid guanidium thiocyanate phenol-chloroform extraction. Anal. Biochem. 162: 156-159.
    • (1987) Anal. Biochem. , vol.162 , pp. 156-159
    • Chomczynski, P.1    Sacchi, N.2
  • 13
    • 0015356172 scopus 로고
    • Of pigs and men in research: A review of applications and analogies of the pig, Sus scrofa, in human medical research
    • Douglas WR (1972) Of pigs and men in research: a review of applications and analogies of the pig, Sus scrofa, in human medical research. Space Life Sci. 3: 226-234.
    • (1972) Space Life Sci. , vol.3 , pp. 226-234
    • Douglas, W.R.1
  • 15
    • 0031978181 scopus 로고    scopus 로고
    • Base calling of automated sequencing tracers using phred. II. Error probabilities
    • Ewing B and Green P (1998) Base calling of automated sequencing tracers using phred. II. Error probabilities. Genome Res. 8: 186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 16
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl M and Green P (1998) Basecalling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.3    Green, P.4
  • 18
    • 1642358496 scopus 로고    scopus 로고
    • Analysis of a full-length cDNA library constructed from swine olfactory bulb for elucidation of expressed genes and their transcription initiation sites
    • Fujisaki S, Sugiyama A, Eguchi T, Watanabe Y, Hiraiwa H, Honma D, Saito T and Yasue H (2004) Analysis of a full-length cDNA library constructed from swine olfactory bulb for elucidation of expressed genes and their transcription initiation sites. J. Vet. Med. Sci. 66: 15-23.
    • (2004) J. Vet. Med. Sci. , vol.66 , pp. 15-23
    • Fujisaki, S.1    Sugiyama, A.2    Eguchi, T.3    Watanabe, Y.4    Hiraiwa, H.5    Honma, D.6    Saito, T.7    Yasue, H.8
  • 21
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA Sequence Assembly Program
    • Huang X and Madan A (1999) CAP3: A DNA Sequence Assembly Program. Genome Res. 9: 868-877.
    • (1999) Genome Res. , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 23
  • 24
    • 0036171461 scopus 로고    scopus 로고
    • Phylogenetic relationships of Asian and European pig breeds determined by Mitochondrial DNA polymorphism
    • Kim KI, Lee JH, Li K, Zhang YP, Lee SS, Gongora J and Moran C (2002a) Phylogenetic relationships of Asian and European pig breeds determined by Mitochondrial DNA polymorphism. Animal Genet. 33: 19-25.
    • (2002) Animal Genet. , vol.33 , pp. 19-25
    • Kim, K.I.1    Lee, J.H.2    Li, K.3    Zhang, Y.P.4    Lee, S.S.5    Gongora, J.6    Moran, C.7
  • 25
    • 0036814131 scopus 로고    scopus 로고
    • Assessment of genetic diversity of Korean native pigs using AFLP markers
    • Kim KS, Yeo JS and Kim JW (2002b) Assessment of genetic diversity of Korean native pigs using AFLP markers. Genes Genet. Syst. 77: 361-368.
    • (2002) Genes Genet. Syst. , vol.77 , pp. 361-368
    • Kim, K.S.1    Yeo, J.S.2    Kim, J.W.3
  • 26
    • 0036104036 scopus 로고    scopus 로고
    • Genetic structure of Korean native pig using microsatellite markers
    • Kim KS and Choi CB (2002) Genetic structure of Korean native pig using microsatellite markers. Korean J. Genetics 24: 1-7.
    • (2002) Korean J. Genetics , vol.24 , pp. 1-7
    • Kim, K.S.1    Choi, C.B.2
  • 27
    • 30844437570 scopus 로고    scopus 로고
    • Analysis of public single nucleotide polymorphisms in commercial pig populations
    • Kollers S, Megy K and Rocha D (2005) Analysis of public single nucleotide polymorphisms in commercial pig populations. Animal Genet. 36: 426-431.
    • (2005) Animal Genet. , vol.36 , pp. 426-431
    • Kollers, S.1    Megy, K.2    Rocha, D.3
  • 28
    • 1842608975 scopus 로고    scopus 로고
    • Characterization of 298 ESTs from porcine back fat tissue and their assignment to the SSRH radiation hybrid map
    • Mikawa A, Suzuki H, Suzuki K, Toki D, Uenishi H, Awata T and Hamashima N (2004) Characterization of 298 ESTs from porcine back fat tissue and their assignment to the SSRH radiation hybrid map. Mamm. Genome 15: 315-322.
    • (2004) Mamm. Genome , vol.15 , pp. 315-322
    • Mikawa, A.1    Suzuki, H.2    Suzuki, K.3    Toki, D.4    Uenishi, H.5    Awata, T.6    Hamashima, N.7
  • 30
    • 1642460155 scopus 로고    scopus 로고
    • An improved method for constructing a full-length enriched cDNA library using small amounts of total RNA as a starting material
    • Oh JH, Kim YS and Kim NS (2003) An improved method for constructing a full-length enriched cDNA library using small amounts of total RNA as a starting material. Exp. Mol. Med. 35: 586-590.
    • (2003) Exp. Mol. Med. , vol.35 , pp. 586-590
    • Oh, J.H.1    Kim, Y.S.2    Kim, N.S.3
  • 32
  • 35
    • 0037381234 scopus 로고    scopus 로고
    • Quality and completeness of SNP databases
    • Reich DE, Gabriel SB and Altshuler D (2003) Quality and completeness of SNP databases. Nat. Genet. 33: 457-458.
    • (2003) Nat. Genet. , vol.33 , pp. 457-458
    • Reich, D.E.1    Gabriel, S.B.2    Altshuler, D.3
  • 36
    • 0036222178 scopus 로고    scopus 로고
    • Normalized cDNA libraries from a porcine model of orthopedic implant-associated infection
    • Rink A, Santschi EM and Beattie CW (2002) Normalized cDNA libraries from a porcine model of orthopedic implant-associated infection. Mamm. Genome 13: 198-205.
    • (2002) Mamm. Genome , vol.13 , pp. 198-205
    • Rink, A.1    Santschi, E.M.2    Beattie, C.W.3
  • 37
    • 0037621705 scopus 로고    scopus 로고
    • Advances in pig genomics and functional gene discovery
    • Rothschild MF (2003) Advances in pig genomics and functional gene discovery. Comp. Funct. Genom. 4: 266-270.
    • (2003) Comp. Funct. Genom. , vol.4 , pp. 266-270
    • Rothschild, M.F.1
  • 39
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith TF and Waterman MS (1981) Identification of common molecular subsequences. J. Mol. Biol. 147: 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 42
    • 0347755533 scopus 로고    scopus 로고
    • PEDE (Pig EST data Explorer): Construction of a database for ESTs derived from porcine full-length cDNA libraries
    • Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N and Awata T (2004) PEDE (Pig EST data Explorer): Construction of a database for ESTs derived from porcine full-length cDNA libraries. Nucleic Acids Res. 32: 484-488.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 484-488
    • Uenishi, H.1    Eguchi, T.2    Suzuki, K.3    Sawazaki, T.4    Toki, D.5    Shinkai, H.6    Okumura, N.7    Awata, T.8
  • 43
    • 0030188330 scopus 로고    scopus 로고
    • Evaluation and characterization of porcine small intestine cDNA library: Analysis of 839 clones
    • Wintero AK, Fredholm M and Davies W (1996) Evaluation and characterization of porcine small intestine cDNA library: analysis of 839 clones. Mamm. Genome 7: 509-517.
    • (1996) Mamm. Genome , vol.7 , pp. 509-517
    • Wintero, A.K.1    Fredholm, M.2    Davies, W.3
  • 45
    • 0036865802 scopus 로고    scopus 로고
    • Generation of expressed sequence tags from a normalized porcine skeletal muscle cDNA library
    • Yao J, Coussens PM, Saama P, Suchyta S and Ernst CW (2002) Generation of expressed sequence tags from a normalized porcine skeletal muscle cDNA library Anim. Biotechnol. 13: 211-222.
    • (2002) Anim. Biotechnol. , vol.13 , pp. 211-222
    • Yao, J.1    Coussens, P.M.2    Saama, P.3    Suchyta, S.4    Ernst, C.W.5
  • 46
    • 11044232520 scopus 로고    scopus 로고
    • Generation of a bovine oocyte cDNA library and microarray: Resources for identification of genes important for follicular development and early embyogenesis
    • Yao J, Ren X, Ireland JJ, Coussens PM, Smith TPL and Smith GW (2004) Generation of a bovine oocyte cDNA library and microarray: resources for identification of genes important for follicular development and early embyogenesis. Physiolgenomics 19: 84-92.
    • (2004) Physiolgenomics , vol.19 , pp. 84-92
    • Yao, J.1    Ren, X.2    Ireland, J.J.3    Coussens, P.M.4    Smith, T.P.L.5    Smith, G.W.6
  • 47
    • 24644515533 scopus 로고    scopus 로고
    • EST-based analysis of gene expression in the porcine brain
    • Zhang B, Jin W, Zeng Y, Su Z, Hu S and Yu J (2004) EST-based analysis of gene expression in the porcine brain. Geno. Prot. Bioinfo. 2: 237-244.
    • (2004) Geno. Prot. Bioinfo. , vol.2 , pp. 237-244
    • Zhang, B.1    Jin, W.2    Zeng, Y.3    Su, Z.4    Hu, S.5    Yu, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.