Assessment of genetic diversity of Korean native pig (Sus scrofa) using AFLP markers

Genes and Genetic Systems

Volumn 77, Issue 5, 2002, Pages 361-368

  Kim, Kyung Seok ^a   Yeo, Jung Sou ^a   Kim, Jae Woo ^a  

^a Yeungnam University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANALYTIC METHOD; ARTICLE; CHINESE; GENE CLUSTER; GENE LOCUS; GENETIC VARIABILITY; HETEROZYGOSITY; KOREA; MARKER GENE; MICROSATELLITE MARKER; MOLECULAR PHYLOGENY; NONHUMAN; SWINE; ANIMAL; GENETIC POLYMORPHISM; GENETICS; PHYLOGENY; PRINCIPAL COMPONENT ANALYSIS;

SUS SCROFA;

ANIMALS; PHYLOGENY; POLYMORPHISM, GENETIC; PRINCIPAL COMPONENT ANALYSIS; SUS SCROFA; VARIATION (GENETICS);

EID: 0036814131     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.77.361     Document Type: Article

References (30)

1. Agresti A. (1990) Categorical Data Analysis, New York: Wiley Interscience.
2. Ajmone-Marsan, P., Valentini, A., Cassandro, M., Vecchiotti-Antaldi, G., Bertoni, G., and Kuiper, M. (1997) AFLPTM markers for DNA fingerprinting in cattle. Anim. Genet. 28, 418-426.
3. Ajmone-Marsan, P., Negri I, R., Crepaldi, P., Milanesi, E., Gorni, C., Valentini, A., and Cicogna, M. (2001) Assessing genetic diversity in Italian goat populations using AFLP markers. Anim. Genet. 32, 81-288.
4. Allnutt, T. R., Newton, A. C., Lara, A., Premoli, A., Armesto, J. J., Vergara, R. and Gardner, M. (1999) Genetic variation in Fitzroya cupressoides (alerce), a threatened South American conifer. Mol. Ecol. 8, 975-987.
5. Canon J., Checa M. L., Carleos C., Vega-Pla JL, Vallejo M., and Dunner S. (2000) The genetic structure of Spanish Celtic horse breeds inferred from microsatellite data. Anim. Genet. 31, 39-48.
6. Gaudeul, M., Taberlet, P., and Till-Bottraud, I. (2000) Genetic diversity in an endangered alphine plant, Eryngium alpinum L. (Apiaceae), inferred from amplified fragment length polymorphism markers. Molecular Ecology 9, 1625-1637.
7. Jackson, D. A., Somers, K. M., and Harvey, H. H. (1989) Similarity coefficients: Measures of co-occurrence and association or simply measures of occurrence? Am. Nat. 133, 436.
8. Janssen, P., Maquelin, K., Coopman, R., Tjernberg, I., Bouvet, P., Kersters, K., and Dijkshoorn, L. (1997) Discrimination of Acinetobacter genomic species by AFLP fingerprinting. Int. J. Syst. Bacteriol. 47, 1179-1187.
9. Kim, K. S., and Choi, C. B. (2002) Genetic structure of Korean native pig using microsatellite markers. Korean J. Genetics 24, 1-7.
10. Kim, K. S., Jeong, H. W., Park, C. K. and Ha J. H. (2001a) Suitability of AFLP markers for the study of Genetic relationships among Korean native dogs. Genes Genet. Syst. 76, 243-250.
11. Kim, K. S., Tanabe, Y., Park, C. K., and Ha, J. H. (2001b) Genetic variability in East Asian dogs using microsatellite loci analysis. J. Heredity 92, 398-403.
12. Lewontin, R. C. (1972) The apportionment of human diversity. Evolutionary Biology 6, 381-394.
13. MacHugh, D. E., Loftus, R. T., Cunningham, P., and Bradley, D. G. (1998) Genetic structure of seven European cattle breeds assessed using 20 microsatellite markers. Anim. Genet. 29, 333-340.
14. Maniatis, T., Sambrook, J., and Fritsh, E. F. (1982) Molecular Cloning; A Labolatory Manual. 2nd Ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
15. Martinez, A. M., Delgado, J. V., Rodero, A., and Vega-Pla, J. L. (2000) Genetic structure of the Iberian pig breed using microsatellites. Anim. Genet. 31, 295-301.
16. Nei, M. (1973) Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70, 3321-3323.
17. Nei, M. (1978) Estimation of averaged heterozygosity and genetic distance from a small number of individuals Genetics 89, 583-590.
18. Ovilo, C., Cervera, M. T., Castellanos, C., and Martinez-Zapater, J. M. (2000) Characterization of Iberian pig genotypes using AFLP markers. Anim. Genet. 31, 117-122.
19. Qi, X., and Lindhout P. (1997) Development of AFLP markers in barley. Mol. Gen. Genet. 254, 330-336.
20. Rohlf, F. J. (1992) NTSYS-PC Numerical Taxonomy and Multivariate Analysis System, Version 1.70 Exeter Publishers, Setauket, NY.
21. Saitbekova, N., Gaillar, C., Obexer-Ruff, G., and Dolf, G. (1999) Genetic diversity in Swiss goat breeds based on microsatellite analysis. Anim. Genetics. 30, 36-41.
22. Saporta, G., (1991) Probability, Analyse de Donnis et Statistiques, Technip, Paris.
23. Simons, G., van der Lee, T., Diergaarde, P., et al. (1997) AFLP- based fine mapping of the Mlo gene to a 30-kb DNA segment of the barley genome. Genomics 44, 61-70.
24. SAS (2000) SAS/STAT User's Guide, Release 8.01. SAS Institute, Cary.
25. Sokal, R. R. and Sneath, P. H. A. (1963) Principles of Numerical Taxonomy. Freedman. San Francisco.
26. Van der Lee, T., De Witte, I., Drenth, A., Alfonso, C., and Govers, F. (1997) AFLP Linkage Map of the Oomycete Phytophthora infestans. Fungal Genet. Biol. 21, 278-291.
27. Vos, P., Hogers, R., Bleeker, M. et al. (1995) AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414.
28. Yeh, F., Yang, R. C., and Boyle, T., (1997) POPGENE, the User-Friendly Shareware for Population Genetic Analysis. Molecular Biology and Biotechnology Center, University of Alberta, Edmonton.
29. Yeo, J. S., Kim, J. W., Lee, E. J., and Lee, S. T. (1997) Identification of genetic characteristics in the Korean native pig using DNA fingerprinting. Kor. J. Animal Sci. 39, 647-652.
30. Yeo, J. S., Kim, J. W., Chang, T. K., Park, Y. A., and Nam, D. H. (2000) Utilization of DNA marker-assisted selection in Korean native animals. Biotechnol. Bioprocess Eng. 5, 71-78.