Structure of the plasminogen kringle 4 binding calcium-free form of the C-type lectin-like domain of tetranectin

Biochemistry

Volumn 43, Issue 27, 2004, Pages 8636-8643

  Nielbo, Steen ^a   Thomsen, Jens K ^b   Graversen, Jonas H ^a   Jensen, Peter Holme ^b   Etzerodt, Michael ^a   Poulsen, Flemming M ^b   Thøgersen, Hans Christian ^a  

^a AARHUS UNIVERSITY   (Denmark)

^b UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM; CONFORMATIONS; NUCLEAR MAGNETIC RESONANCE; PROTEINS;

BACKBONE DYNAMICS; PLASMINOGEN KRINGLE;

BIOCHEMISTRY;

CALCIUM ION; CARBON 13; LECTIN; NITROGEN 15; PLASMINOGEN; TETRANECTIN;

ARTICLE; CALCIUM BINDING; CRYSTAL STRUCTURE; ESCHERICHIA COLI; ISOTOPE LABELING; KRINGLE DOMAIN; LIGAND BINDING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PLASMINOGEN ACTIVATION; PRIORITY JOURNAL; PROTEIN STRUCTURE; STRUCTURE ACTIVITY RELATION;

APOPROTEINS; CALCIUM; KRINGLES; LECTINS, C-TYPE; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PLASMINOGEN; PROLINE; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY;

ESCHERICHIA COLI;

EID: 3042854201     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi049570s     Document Type: Article

References (40)

1. Clemmensen, I., Petersen, L. C., and Kluft, C. (1986) Purification and characterization of a novel, oligomeric, plasminogen kringle 4 binding protein from human plasma: Tetranectin, Eur. J. Biochem. 156, 327-333.
2. Jensen, B. A., McNair, P., Hyldstrup, L., and Clemmensen, I. (1987) Plasma tetranectin in healthy male and female individuals, measured by enzyme-linked immunosorbent assay, J. Lab. Clin. Med. 110, 612-617.
3. Høgdall, C. K. (1998) Human tetranectin: Methodological and clinical studies, APMIS Suppl. 86, 1-31.
4. Høgdall, C. K., Christensen, L., and Clemmensen, I. (1994) Tetranectin, a plasma and tissue protein-a prognostic marker of breast and ovarian cancer, Ugeskr. Laeg. 156, 6190-6195.
5. Wewer, U. M., and Albrechtsen, R. (1992) Tetranectin, a plasminogen kringle 4-binding protein. Cloning and gene expression pattern in human colon cancer, Lab. Invest. 67, 253-262.
6. De Vries, T. J., De Wit, P. E., Clemmensen, I., Verspaget, H. W., Weidle, U. H., Bröcker, E. B., Ruiter, D. J., and Van Muijen, G. N. (1996) Tetranectin and plasmin/plasminogen are similarly distributed at the invasive front of cutaneous melanoma lesions, J. Pathol. 179, 260-265.
7. Wewer, U. M., Iba, K., Durkin, M. E., Nielsen, F. C., Loechel, F., Gilpin, B. J., Kuang, W., Engvall, E., and Albrechtsen, R. (1998) Tetranectin is a novel marker for myogenesis during embryonic development, muscle regeneration, and muscle cell differentiation in vitro, Dev. Biol. 200, 247-259.
8. Iba, K., Sawada, N., Chiba, H., Wewer, U. M., Ishii, S., and Mofi, M. (1995) Transforming growth factor-b1 downregulates dexamethasone-induced tetranectin gene expression during the in vitro mineralization of the human osteoblastic cell line SV-HFO, FEBS Lett. 373, 1-4.
9. Wewer, U. M., Ibaraki, K., Schjørring, P., Durkin, M. E., Young, M. F., and Albrechtsen, R. (1994) A potential role for tetranectin in mineralization during osteogenesis, J. Cell Biol. 127, 1767-1775.
10. Iba, K., Durkin, M. E., Johnsen, L., Hunziker, E., Damgaard-Pedersen, K., Zhang, H., Engvall, E., Albrechtsen, R., and Wewer, U. M. (2001) Mice with a targeted deletion of the tetranectin gene exhibit a spinal deformity, Mol. Cell. Biol. 21, 7817-7825.
11. Holtet, T. L., Graversen, J. H., Clemmensen, I., Thøgersen, H. C., and Etzerodt, M. (1997) Tetranectin, a trimeric plasminogen-binding C-type lectin, Protein Sci. 6, 1511-1515.
12. Lorentsen, R. H., Graversen, J. H., Caterer, N. R., Thøgersen, H. C., and Etzerodt, M. (2000) The heparin-binding site in tetranectin is located in the N-terminal region and binding does not involve the carbohydrate recognition domain, Biochem. J. 347 (Part 1), 83-87.
13. Nielsen, B. B., Kastrup, J. S., Rasmussen, H., Holtet, T. L., Graversen, J. H., Etzerodt, M., Thøgersen, H. C., and Larsen, I. K. (1997) Crystal structure of tetranectin, a trimeric plasminogen-binding protein with an α-helical coiled coil, FEBS Lett. 412, 388-396.
14. Nielsen, B. B., Kastrup, J. S., Rasmussen, H., Graversen, J. H., Etzerodt, M., Thøgersen, H. C., and Larsen, I. K. (2000) Crystallization and molecular-replacement solution of a truncated form of human recombinant tetranectin, Acta Crystallogr., Sect. D 56, 637-639.
15. Graversen, J. H., Lorentsen, R. H., Jacobsen, C., Moestrup, S. K., Sigurskjold, B. W., Thøgersen, H. C., and Etzerodt, M. (1998) The plasminogen binding site of the C-type lectin tetranectin is located in the carbohydrate recognition domain, and binding is sensitive to both calcium and lysine, J. Biol. Chem. 273, 29241-29246.
16. Graversen, J. H., Sigurskjold, B. W., Thøgersen, H. C., and Etzerodt, M. (2000) Tetranectin-binding site on plasminogen kringle 4 involves the lysine-binding pocket and at least one additional amino acid residue, Biochemistry 39, 7414-7419.
17. Kluft, C., Jie, A. F., Los, P., de Wit, E., and Havekes, L. (1989) Functional analogy between lipoprotein(a) and plasminogen in the binding to the kringle 4 binding protein, tetranectin, Biochem. Biophys. Res. Commun. 161, 427-433.
18. Caterer, N. R., Graversen, J. H., Jacobsen, C., Moestrup, S. K., Sigurskjold, B. W., Etzerodt, M., and Thøgersen, H. C. (2002) Specificity determinants in the interaction of apolipoprotein(a) kringles with tetranectin and LDL, Biol. Chem. 383, 1743-1750.
19. Westergaard, U. B., Andersen, M. H., Heegaard, C. W., Fedosov, S. N., and Petersen, T. E. (2003) Tetranectin binds hepatocyte growth factor and tissue-type plasminogen activator, Eur. J. Biochem. 270, 1850-1854.
20. Drickamer, K. (1999) C-type lectin-like domains, Curr. Opin. Struct. Biol. 9, 585-590.
21. Kastrup, J. S., Nielsen, B. B., Rasmussen, H., Holtet, T. L., Graversen, J. H., Etzerodt, M., Thøgersen, H. C., and Larsen, I. K. (1998) Structure of the C-type lectin carbohydrate recognition domain of human tetranectin, Acta Crystallogr., Sect. D 54, 757-766.
22. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: A multidimensional spectral processing system based on UNIX pipes, J. Biomol. NMR 6, 277-293.
23. Kjær, M., Andersen, K. V., and Poulsen, F. M. (1994) Automated and semiautomated analysis of homo- and heteronuclear multidimensional nuclear magnetic resonance spectra of proteins: The program Pronto, Methods Enzymol. 239, 288-307.
24. Zimmerman, D. E., Kulikowski, C. A., Huang, Y., Feng, W., Tashiro, M., Shimotakahara, S., Chien, C., Powers, R., and Montelione, G. T. (1997) Automated analysis of protein NMR assignments using methods from artificial intelligence, J. Mol. Biol. 269, 592-610.
25. Koradi, R., Billeter, M., and Wüthrich, K. (1996) MOLMOL: A program for display and analysis of macromolecular structures, J. Mol. Graphics 14, 51-55 and 29-32.
26. Wütrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York.
27. Güntert, P., Mumenthaler, C., and Wüthrich, K. (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA, J. Mol. Biol. 273, 283-298.
28. Herrmann, T., Güntert, P., and Wüthrich, K. (2002) Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA, J. Mol. Biol. 319, 209-227.
29. Cornilescu, G., Delaglio, F., and Bax, A. (1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology, J. Biomol. NMR 13, 289-302.
30. Schwieters, C. D., Kuszewski, J. J., Tjandra, N., and Marius Clore, G. (2003) The Xplor-NIH NMR molecular structure determination package, J. Magn. Reson. 160, 65-73.
31. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr., Sect. D 54, 905-921.
32. Linge, J. P., Williams, M. A., Spronk, C. A., Bonvin, A. M., and Nilges, M. (2003) Refinement of protein structures in explicit solvent, Proteins: Struct., Funct., Genet. 50, 496-506.
33. 2+- dependent structural changes in C-type mannose-binding proteins, Biochemistry 37, 17965-17976.
34. Feinberg, H., Park-Snyder, S., Kolatkar, A. R., Heise, C. T., Taylor, M. E., and Weis, W. I. (2000) Structure of a C-type carbohydrate recognition domain from the macrophage mannose receptor, J. Biol. Chem. 275, 21539-21548.
35. Mullin, N. P., Hall, K. T., and Taylor, M. E. (1994) Characterization of ligand binding to a carbohydrate-recognition domain of the macrophage mannose receptor, J. Biol. Chem. 269, 28405-28413.
36. Ng, K. K., and Weis, W. I. (1998) Coupling of prolyl peptide bond isomerization and Ca2+ binding in a C-type mannose-binding protein, Biochemistry 37, 17977-17989.
37. Poget, S. F., Freund, S. M. V., Howard, M. J., and Bycroft, M. (2001) The ligand-binding loops in the tunicate C-type lectin TC14 are rigid, Biochemistry 40, 10966-10972.
38. Poget, S. F., Legge, G. B., Proctor, M. R., Butler, P. J., Bycroft, M., and Williams, R. L. (1999) The structure of a tunicate C-type lectin from Polyandrocarpa misakiensis complexed with D-galactose, J. Mol. Biol. 290, 867-879.
39. Brown, E. M., and MacLeod, R. J. (2001) Extracellular calcium sensing and extracellular calcium signaling, Physiol. Rev. 81, 239-297.
40. Guex, N., and Peitsch, M. C. (1997) SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling, Electrophoresis 18, 2714-2723.