P elements in the saltans group of Drosophila: A new evaluation of their distribution and number of genomic insertion sites

Molecular Phylogenetics and Evolution

Volumn 32, Issue 1, 2004, Pages 383-387

  De Castro, Juliana Polachini ^a   Carareto, Claudia M A ^a  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

D. emarginata; D. neocordata; Insertion sites; P element; saltans group; Sequence divergence

Indexed keywords

ANIMAL; ARTICLE; CLASSIFICATION; DROSOPHILA; GENETIC VARIABILITY; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE;

ANIMALS; BASE SEQUENCE; CLASSIFICATION; DROSOPHILA; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; VARIATION (GENETICS);

DROSOPHILA EMARGINATA; DROSOPHILA NEOCORDATA; ELLIPTICA SUBGROUP; INSERTION SEQUENCES; SALTANS GROUP; SALTANS SUBGROUP; SOPHOPHORA;

EID: 3042778746     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.01.005     Document Type: Article

References (26)

1. Clark J.B., Kidwell M.G. A phylogenetic perspective on. P transposable element evolution in Drosophila Proc. Natl. Acad. Sci. USA. 94:1997;11428-11433
2. Clark J.B., Altheide T.K., Scholosser M.J., Kidwell M.G. Molecular evolution of. P transposable elements in genus Drosophila. I. The saltans and willistoni species groups Mol. Biol. Evol. 12:1995;902-913
3. Daniels S.B., Strausbaugh L.D. The distribution of P element sequences in Drosophila: the willistoni and saltans species group. J. Mol. Evol. 23:1986;138-148
4. Daniels S.B., Petterson K.R., Strausbaugh L.D., Kidwell M.G., Chovnick A.C. Evidence for horizontal transmission of the. P transposable elements between Drosophila species Genetics. 124:1990;339-355
5. Hagemann S., Miller W.J., Pinsker W. Identification of a complete. P -element in the genome of Drosophila bifasciata Nucleic Acids Res. 20:1992;409-413
6. Hagemann S., Miller W.J., Pinsker W. Two distinct. P element subfamilies in the genome of D. bifasciata Mol. Gen. Genet. 244:1994;168-175
7. Hagemann S., Haring E., Pinsker W. Repeated horizontal transfer of. P transposons between Scaptomyza pallida and Drosophila bifasciata Genetica. 98:1996;43-51
8. Hagemann S., Haring E., Pinsker W. A new. P element subfamily from Drosophila tristis, D. ambigua and D. obscura Genome. 39:1996;978-985
9. Haring E., Hagemann S., Pinsker W. Different evolutionary behavior of. P element subfamilies: M-type and O-type elements in Drosophila bifasciata and D. imaii Gene. 163:1995;197-202
10. Haring E., Hagemann S., Pinsker W. Ancient and recent horizontal invasions of Drosophilids by. P elements J. Mol. Evol. 51:2000;577-586
11. Kogan G.L., Tulin A.V., Aravin A.A., Abramov Y.A., Kalmykova A.I., Maisonhaute C., Gvozdev V.A. The GATE retrotransposon in Drosophila melanogaster: mobility in heterochromatin and aspects of its expression in germline tissues. Mol. Genet. Genomes. 269:2003;234-242
12. Lee S.H., Clark J.B., Kidwell M.G. A. P -element homologous sequence in the house fly, Musca domestica Insect Mol. Biol. 8:1999;491-500
13. O'Grady P.M., Kidwell M.G. Phylogeny of the subgenus Sophophora (Diptera: Drosophilidae) based on combined analysis of nuclear and mitochondrial sequences. Mol. Phylogenet. Evol. 22:2002;442-453
14. O'Grady P.M., Clark J.B., Kidwell M.G. Phylogeny of the Drosophila saltans species group based on combined analysis of nuclear and mitochondrial DNA sequences. Mol. Biol. Evol. 15:1998;656-664
15. Pélandakis M., Solignac M. Molecular phylogeny of Drosophila based on ribosomal RNA sequences. J. Mol. Evol. 37:1993;525-543
16. Pélandakis M., Higgins D.G., Solignac M. Molecular phylogeny of the subgenus Sophophora of Drosophila derived from large subunit of ribosomal RNA sequences. Genetica. 84:1991;87-94
17. Perkins H.D., Howells A.J. Genomic sequences with homology to the. P element of Drosophila melanogaster occur in the blowfly Lucilia cuprina Proc. Natl. Acad. Sci. USA. 89:1992;10753-10757
18. Pinsker W., Haring E., Hagemann S., Miller W.J. The evolutionary life history of. P transposons: from horizontal invaders to domesticated neogenes Chromosoma. 110:2001;148-158
19. Rodriguez-Trelles F., Tarrio R., Ayala F.J. Molecular evolution and phylogeny of the Drosophila saltans species group inferred from the Xdh gene. Mol. Phylogenet. Evol. 13:1999;110-121
20. Rodriguez-Trelles F., Tarrio R., Ayala F.J. Switch in codon bias and increased rates of amino acid substitution in the Drosophila saltans species group. Genetics. 153:1999;339-350
21. Sarkar A., Sengupta R., Krzywinski J., Wang X., Roth C., Collins F.H. P elements are found in the genomes of nematoceran insects of the genus Anopheles Insect Biochem. Mol. Biol. 33:2003;381-387
22. Silva J.C., Kidwell M.G. Horizontal transfer and selection in the evolution of. P elements Mol. Biol. Evol. 17:2000;1542-1557
23. Swofford D. PAUP*: phylogenetic analysis using parsimony (*and other methods) Version 4. 2002;Sinauer Associates, Sunderland, MA
24. Tarrio R., Rodriguez-Trelles F., Ayala F.J. Tree rooting with outgroups when they differ in their nucleotide composition from the ingroup: The Drosophila saltans and willistoni groups, a case study. Mol. Phylogenet. Evol. 16:2000;344-349
25. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple alignment through sequence weighting, positions-specific gap penalties and weigh matrix choice. Nucleic Acids Res. 22:1994;4673-4680
26. Throckmorton L.H., Magalhães L.E. Changes with evolution of piteridine accumulations in species of the saltans group of the genus Drosophila. Univ. Texa Publ. 6205:1962;489-505