-
1
-
-
0035053292
-
Two novel Pao-like retrotransposons (Kamikaze and Yamato) from the silkworm species Bombyx mori and B. mandarina: Common structural features of Pao-like elements
-
Abe H, Ohbayashi F, Sugasaki T, Kanechara M, Terada T, Shimada T, Kawai S, Mita K, Kanamori Y, Yamamoto M-T, Oshiki T (2001) Two novel Pao-like retrotransposons (Kamikaze and Yamato) from the silkworm species Bombyx mori and B. mandarina: common structural features of Pao-like elements. Mol Genet Genomics 265:375-385
-
(2001)
Mol Genet Genomics
, vol.265
, pp. 375-385
-
-
Abe, H.1
Ohbayashi, F.2
Sugasaki, T.3
Kanechara, M.4
Terada, T.5
Shimada, T.6
Kawai, S.7
Mita, K.8
Kanamori, Y.9
Yamamoto, M.-T.10
Oshiki, T.11
-
2
-
-
0023023956
-
Structure and genomic organization of proretrovirus-like elements partially eliminated from the somatic genome of Ascaris lumbricoides
-
Aeby P, Spicher A, de Chastonay Y, Muller F, Tobler H (1986) Structure and genomic organization of proretrovirus-like elements partially eliminated from the somatic genome of Ascaris lumbricoides. EMBO J 5:3353-3360
-
(1986)
EMBO J
, vol.5
, pp. 3353-3360
-
-
Aeby, P.1
Spicher, A.2
De Chastonay, Y.3
Muller, F.4
Tobler, H.5
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0035838369
-
Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
-
Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, Gvozdev VA (2001) Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol 11:1017-1027
-
(2001)
Curr Biol
, vol.11
, pp. 1017-1027
-
-
Aravin, A.A.1
Naumova, N.M.2
Tulin, A.V.3
Vagin, V.V.4
Rozovsky, Y.M.5
Gvozdev, V.A.6
-
6
-
-
0033136444
-
Moose, a new family of LTR-retrotransposons in the mosquito Anopheles gambiae
-
Biessmann H, Walter MF, Le D, Chuan S, Yao JG (1999) Moose, a new family of LTR-retrotransposons in the mosquito Anopheles gambiae. Insect Mol Biol 8:201-212
-
(1999)
Insect Mol Biol
, vol.8
, pp. 201-212
-
-
Biessmann, H.1
Walter, M.F.2
Le, D.3
Chuan, S.4
Yao, J.G.5
-
7
-
-
0034828182
-
Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside
-
Bowen NJ, McDonald JF (2001) Drosophila euchromatic LTR retrotransposons are much younger than the host species in which they reside. Genom Res 11:1527-1540
-
(2001)
Genom Res
, vol.11
, pp. 1527-1540
-
-
Bowen, N.J.1
McDonald, J.F.2
-
8
-
-
0028108183
-
The evolutionary dynamics of repetitive DNA in eukaryotes
-
Charlesworth B, Sniegovski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215-220
-
(1994)
Nature
, vol.371
, pp. 215-220
-
-
Charlesworth, B.1
Sniegovski, P.2
Stephan, W.3
-
9
-
-
0031797353
-
Distribution of the retrotransposable element 412 in Drosophila melanogaster
-
Cizeron G, Lemeunier F, Loevenbruck C, Brehm A, Biemont C (1998) Distribution of the retrotransposable element 412 in Drosophila melanogaster. Mol Biol Evol 15:1589-1599
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1589-1599
-
-
Cizeron, G.1
Lemeunier, F.2
Loevenbruck, C.3
Brehm, A.4
Biemont, C.5
-
10
-
-
0034143269
-
Systematic screening of Anopheles mosquito genomes yields evidence for a major clade of Pao -like retrotransposons
-
Cook JM, Martin J, Lewin A, Sinden RE, Tristem M (2000) Systematic screening of Anopheles mosquito genomes yields evidence for a major clade of Pao -like retrotransposons. Insect Mol Biol 9:109-117
-
(2000)
Insect Mol Biol
, vol.9
, pp. 109-117
-
-
Cook, J.M.1
Martin, J.2
Lewin, A.3
Sinden, R.E.4
Tristem, M.5
-
11
-
-
0000616288
-
Nucleotide sequence of the transposable element, Bel, of Drosophila melanogaster
-
Davis PS, Judd BH (1995) Nucleotide sequence of the transposable element, Bel, of Drosophila melanogaster. Dros Inf Service 76:134-136
-
(1995)
Dros Inf Service
, vol.76
, pp. 134-136
-
-
Davis, P.S.1
Judd, B.H.2
-
12
-
-
0023055855
-
Genomic and structural organization of Drosophila melanogaster G elements
-
Di Nocera PP, Graziani F, Lavorgna G (1986) Genomic and structural organization of Drosophila melanogaster G elements. Nucleic Acids Res 14:675-691
-
(1986)
Nucleic Acids Res
, vol.14
, pp. 675-691
-
-
Di Nocera, P.P.1
Graziani, F.2
Lavorgna, G.3
-
13
-
-
0031466453
-
Constitutive heterochromatin and transposable elements in Drosophila melanogaster
-
Dimitri P (1997) Constitutive heterochromatin and transposable elements in Drosophila melanogaster. Genetica 100:85-93
-
(1997)
Genetica
, vol.100
, pp. 85-93
-
-
Dimitri, P.1
-
14
-
-
0035160923
-
RNA interference in Typanosoma brucei: Cloning of small interfering RNAs provides evidence for retroposon-derived 24-26-nucleotide RNAs
-
Djikeng A, Shi H, Tschui C, Ullu E (2001) RNA interference in Typanosoma brucei: cloning of small interfering RNAs provides evidence for retroposon-derived 24-26-nucleotide RNAs. RNA 7:1522-1530
-
(2001)
RNA
, vol.7
, pp. 1522-1530
-
-
Djikeng, A.1
Shi, H.2
Tschui, C.3
Ullu, E.4
-
16
-
-
0020793569
-
A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity
-
Feinberg AP, Vogelstein B (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132:6-33
-
(1983)
Anal Biochem
, vol.132
, pp. 6-33
-
-
Feinberg, A.P.1
Vogelstein, B.2
-
17
-
-
0028102792
-
Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides
-
Felder H, Herzceg A, de Chastonay Y, Aeby P, Tobler H, Müller F (1994) Tas, a retrotransposon from the parasitic nematode Ascaris lumbricoides. Gene 149:219-225
-
(1994)
Gene
, vol.149
, pp. 219-225
-
-
Felder, H.1
Herzceg, A.2
De Chastonay, Y.3
Aeby, P.4
Tobler, H.5
Müller, F.6
-
18
-
-
0035941478
-
New BEL -like LTR-retrotransposons in Fugu rubripes,C aenorhabditis elegans, and Drosophila melanogaster
-
Frame IG, Cutfield JF, Poulter RTM (2001) New BEL -like LTR-retrotransposons in Fugu rubripes,C aenorhabditis elegans, and Drosophila melanogaster. Gene 263:219-230
-
(2001)
Gene
, vol.263
, pp. 219-230
-
-
Frame, I.G.1
Cutfield, J.F.2
Poulter, R.T.M.3
-
19
-
-
0030464460
-
SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comp Appl Biosci 12:543-548
-
(1996)
Comp Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
20
-
-
0028828689
-
Homeless is required for RNA localization in Drosophila oogenesis and encodes a new member of the DE-H family of RNA-depended ATPases
-
Gillespie DE, Berg CA (1995) homeless is required for RNA localization in Drosophila oogenesis and encodes a new member of the DE-H family of RNA-depended ATPases. Genes Dev 9:2495-2508
-
(1995)
Genes Dev
, vol.9
, pp. 2495-2508
-
-
Gillespie, D.E.1
Berg, C.A.2
-
22
-
-
0018967212
-
Double-stranded sequences in RNA of Drosophila melanogaster: Relationship to mobile dispersed genes
-
Ilyin YV, Chmeliauskaite VG, Georgiev GP (1980) Double-stranded sequences in RNA of Drosophila melanogaster: relationship to mobile dispersed genes. Nucleic Acids Res 8:3439-3457
-
(1980)
Nucleic Acids Res
, vol.8
, pp. 3439-3457
-
-
Ilyin, Y.V.1
Chmeliauskaite, V.G.2
Georgiev, G.P.3
-
23
-
-
0032739015
-
Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD
-
Ketting RF, Haverkamp TH, van Luenen HG, Plasterk RH (1999) Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD. Cell 99:133-141
-
(1999)
Cell
, vol.99
, pp. 133-141
-
-
Ketting, R.F.1
Haverkamp, T.H.2
Van Luenen, H.G.3
Plasterk, R.H.4
-
24
-
-
0026035178
-
Retroviral integrase domains: DNA binding and the recognition of LTR sequences
-
Khan E, Mack JP, Katz RA, Kulkosky J, Skalka AM (1991) Retroviral integrase domains: DNA binding and the recognition of LTR sequences. Nucleic Acids Res 19:851-860
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 851-860
-
-
Khan, E.1
Mack, J.P.2
Katz, R.A.3
Kulkosky, J.4
Skalka, A.M.5
-
25
-
-
0026719238
-
Residues critical for retroviral integrative recombination in a region that is highly conserved among retroviral/retrotransposon integrases and bacterial insertion sequence transposases
-
Kulkosky J, Jones KS, Katz RA, Mack JP, Skalka AM (1992) Residues critical for retroviral integrative recombination in a region that is highly conserved among retroviral/retrotransposon integrases and bacterial insertion sequence transposases. Mol Cell Biol 12:2331-2338
-
(1992)
Mol Cell Biol
, vol.12
, pp. 2331-2338
-
-
Kulkosky, J.1
Jones, K.S.2
Katz, R.A.3
Mack, J.P.4
Skalka, A.M.5
-
26
-
-
0028349604
-
Drosophila micropia retrotransposon encodes a testis-specific antisense RNA complementary to reverse transcriptase
-
Lankenau S, Corces VG, Lankenau D-H (1994) Drosophila micropia retrotransposon encodes a testis-specific antisense RNA complementary to reverse transcriptase. Mol Cell Biol 14:1764-1775
-
(1994)
Mol Cell Biol
, vol.14
, pp. 1764-1775
-
-
Lankenau, S.1
Corces, V.G.2
Lankenau, D.-H.3
-
27
-
-
0033057257
-
Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotansposons
-
Malik HS, Eickbush TH (1999) Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotansposons. J Virol 73:5186-5190
-
(1999)
J Virol
, vol.73
, pp. 5186-5190
-
-
Malik, H.S.1
Eickbush, T.H.2
-
28
-
-
0034917751
-
Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses
-
Malik HS, Eickbush TH (2001) Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res 11:1187-1197
-
(2001)
Genome Res
, vol.11
, pp. 1187-1197
-
-
Malik, H.S.1
Eickbush, T.H.2
-
29
-
-
0025996907
-
Evolution of retroposons by acquisition or deletion of retrovirus-like genes
-
McClure MA (1991) Evolution of retroposons by acquisition or deletion of retrovirus-like genes. Mol Biol Evol 8:835-856
-
(1991)
Mol Biol Evol
, vol.8
, pp. 835-856
-
-
McClure, M.A.1
-
30
-
-
0028053448
-
Expression of Drosophila melanogaster F elements in vivo
-
Minchiotti G, Countursi C, Graziani F, Gargiulo G, di Nocera PP (1994) Expression of Drosophila melanogaster F elements in vivo. Mol Gen Genet 245:152-159
-
(1994)
Mol Gen Genet
, vol.245
, pp. 152-159
-
-
Minchiotti, G.1
Countursi, C.2
Graziani, F.3
Gargiulo, G.4
Di Nocera, P.P.5
-
31
-
-
0027364829
-
Two subfamilies MDG1retrotransposon with different evolutionary histories in D melanogaster
-
Nurminsky DI (1993) Two subfamilies MDG1retrotransposon with different evolutionary histories in D melanogaster. J Mol Evol 37:496-503
-
(1993)
J Mol Evol
, vol.37
, pp. 496-503
-
-
Nurminsky, D.I.1
-
32
-
-
0027941391
-
Structure, molecular evolution and maintenance of copy number of extended repeated structure in the X-heterochromatin of Drosophila melanogaster
-
Nurminsky DI, Shevelyov YY, Nuzhdin SV, Gvozdev VA (1994) Structure, molecular evolution and maintenance of copy number of extended repeated structure in the X-heterochromatin of Drosophila melanogaster. Chromosoma 103:277-285
-
(1994)
Chromosoma
, vol.103
, pp. 277-285
-
-
Nurminsky, D.I.1
Shevelyov, Y.Y.2
Nuzhdin, S.V.3
Gvozdev, V.A.4
-
33
-
-
0029808122
-
Molecular structure of the transposable element ninja in Drosophila simulans
-
Ogura K, Takechi S, Nakayama T, Yamamoto MT (1996) Molecular structure of the transposable element ninja in Drosophila simulans. Genes Genet Syst 71:1-8
-
(1996)
Genes Genet Syst
, vol.71
, pp. 1-8
-
-
Ogura, K.1
Takechi, S.2
Nakayama, T.3
Yamamoto, M.T.4
-
34
-
-
0030033715
-
Drosophila telomeres: New views on chromosome evolution
-
Pardue MI, Danilevskaya ON, Lowenhaupt K, Slot F, Traverse KL (1996) Drosophila telomeres: new views on chromosome evolution. Trends Genet 12:48-52
-
(1996)
Trends Genet
, vol.12
, pp. 48-52
-
-
Pardue, M.I.1
Danilevskaya, O.N.2
Lowenhaupt, K.3
Slot, F.4
Traverse, K.L.5
-
35
-
-
0030814489
-
Germ line transposition of the copia retrotransposon in Drosophila melanogaster is restricted to males by tissue-specific control of copia RNA levels
-
Pasyukova EG, Nuzhdin SV, Li W, Flavell AJ (1997) Germ line transposition of the copia retrotransposon in Drosophila melanogaster is restricted to males by tissue-specific control of copia RNA levels. Mol Gen Genet 255:115-124
-
(1997)
Mol Gen Genet
, vol.255
, pp. 115-124
-
-
Pasyukova, E.G.1
Nuzhdin, S.V.2
Li, W.3
Flavell, A.J.4
-
36
-
-
0023189868
-
A structural model for the retroviral proteases
-
Pearl LH, Taylor WR (1987) A structural model for the retroviral proteases. Nature 329:351-354
-
(1987)
Nature
, vol.329
, pp. 351-354
-
-
Pearl, L.H.1
Taylor, W.R.2
-
37
-
-
0029002509
-
Transposable elements are stable structural components of Drosophila melanogaster heterochromatin
-
Pimpinelli S, Berloco M, Fanti L, Dimitri P, Bonaccorsi S, Marcheti E, Caizzi R, Caggese C, Gatti M (1995) Transposable elements are stable structural components of Drosophila melanogaster heterochromatin. Proc Natl Acad Sci USA 92:3804-3808
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 3804-3808
-
-
Pimpinelli, S.1
Berloco, M.2
Fanti, L.3
Dimitri, P.4
Bonaccorsi, S.5
Marcheti, E.6
Caizzi, R.7
Caggese, C.8
Gatti, M.9
-
38
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
40
-
-
0035281741
-
RNA interference - 2001
-
Sharp PA (2001) RNA interference - 2001. Genes Dev 15:485-490
-
(2001)
Genes Dev
, vol.15
, pp. 485-490
-
-
Sharp, P.A.1
-
41
-
-
0027159192
-
Aurora, a non-mobile retrotransposon in Drosophila melanogaster heterochromatin
-
Shevelyov YY (1993) Aurora, a non-mobile retrotransposon in Drosophila melanogaster heterochromatin. Mol Gen Genet 239:205-208
-
(1993)
Mol Gen Genet
, vol.239
, pp. 205-208
-
-
Shevelyov, Y.Y.1
-
42
-
-
0024711821
-
Heterochromatic regions in different Drosophila melanogaster stocks contain similar arrangements of moderate repeats with inserted copia -like elements (MDG1)
-
Shevelyov YY, Balakireva MD, Gvozdev VA (1989) Heterochromatic regions in different Drosophila melanogaster stocks contain similar arrangements of moderate repeats with inserted copia -like elements (MDG1). Chromosoma 98:117-122
-
(1989)
Chromosoma
, vol.98
, pp. 117-122
-
-
Shevelyov, Y.Y.1
Balakireva, M.D.2
Gvozdev, V.A.3
-
43
-
-
0034928012
-
A role of the Drosophila homeless gene in repression of Stellate in male meiosis
-
Stapleton W, Das S, McKee BD (2001) A role of the Drosophila homeless gene in repression of Stellate in male meiosis. Chromosoma 110:228-240
-
(2001)
Chromosoma
, vol.110
, pp. 228-240
-
-
Stapleton, W.1
Das, S.2
McKee, B.D.3
-
44
-
-
0032717319
-
The rde-1gene, RNA interference, and transposon silencing in C. elegans
-
Tabara H, Sarkissian M, Kelly WG, Fleenor J, Grishok A, Timmons L, Fire A, Mello CC (1999) The rde-1gene, RNA interference, and transposon silencing in C. elegans. Cell 99:123-132
-
(1999)
Cell
, vol.99
, pp. 123-132
-
-
Tabara, H.1
Sarkissian, M.2
Kelly, W.G.3
Fleenor, J.4
Grishok, A.5
Timmons, L.6
Fire, A.7
Mello, C.C.8
-
45
-
-
0024319520
-
A non radioactive in situ hybridization method for localization of specific RNAs in Drosophila embryos reveals a translational control of the segmentation gene hunchback
-
Tautz D, Pfeifle C (1989) A non radioactive in situ hybridization method for localization of specific RNAs in Drosophila embryos reveals a translational control of the segmentation gene hunchback. Chromosoma 98:81-85
-
(1989)
Chromosoma
, vol.98
, pp. 81-85
-
-
Tautz, D.1
Pfeifle, C.2
-
46
-
-
0031001982
-
Heterochromatic Stellate gene cluster in Drosophila melanogaster: Structure and molecular evolution
-
Tulin AV, Kogan GL, Filipp D, Balakireva MD, Gvozdev VA (1997) Heterochromatic Stellate gene cluster in Drosophila melanogaster: structure and molecular evolution. Genetics 146:253-262
-
(1997)
Genetics
, vol.146
, pp. 253-262
-
-
Tulin, A.V.1
Kogan, G.L.2
Filipp, D.3
Balakireva, M.D.4
Gvozdev, V.A.5
-
47
-
-
0024729587
-
The β-heterochromatic sequences flanking the I elements are themselves defective transposable elements
-
Vaury C, Bucheton A, Pellison A (1989) The β-heterochromatic sequences flanking the I elements are themselves defective transposable elements. Chromosoma 98:215-224
-
(1989)
Chromosoma
, vol.98
, pp. 215-224
-
-
Vaury, C.1
Bucheton, A.2
Pellison, A.3
-
48
-
-
0034634360
-
Transgene and transposon silencing in Chlamydomonas reinhardtii DEAH-box RNA helicase
-
Wu-Scharf D, Jeong B, Zhang C, Cerutti H (2000) Transgene and transposon silencing in Chlamydomonas reinhardtii DEAH-box RNA helicase. Science 290:1159-1163
-
(2000)
Science
, vol.290
, pp. 1159-1163
-
-
Wu-Scharf, D.1
Jeong, B.2
Zhang, C.3
Cerutti, H.4
-
49
-
-
0025006614
-
Origin and evolution of retroelements based upon their reverse transcriptase sequences
-
Xiong Y, Eickbush TH (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J 9:3353-3362
-
(1990)
EMBO J
, vol.9
, pp. 3353-3362
-
-
Xiong, Y.1
Eickbush, T.H.2
-
50
-
-
0027281011
-
Pao, a highly divergent retrotransposable element from Bombyx mori containing long terminal repeats with tandem copies of the putative R region
-
Xiong Y, Burke WD, Eickbush TH (1993) Pao, a highly divergent retrotransposable element from Bombyx mori containing long terminal repeats with tandem copies of the putative R region. Nucleic Acids Res 21:2117-2123
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 2117-2123
-
-
Xiong, Y.1
Burke, W.D.2
Eickbush, T.H.3
-
51
-
-
0031960778
-
The RNA product of the Doc retrotransposon is localized on the Drosophila oocyte cytoskeleton
-
Zhao D, Bownes M (1998) The RNA product of the Doc retrotransposon is localized on the Drosophila oocyte cytoskeleton. Mol Gen Genet 257:497-504
-
(1998)
Mol Gen Genet
, vol.257
, pp. 497-504
-
-
Zhao, D.1
Bownes, M.2
-
52
-
-
0030325219
-
Morphology and structure of polytene chromosomes
-
Zhimulev IF (1996) Morphology and structure of polytene chromosomes. Adv Genet 34:1-497
-
(1996)
Adv Genet
, vol.34
, pp. 1-497
-
-
Zhimulev, I.F.1
|