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Volumn 13, Issue 1, 1999, Pages 110-121

Molecular Evolution and Phylogeny of the Drosophila saltans Species Group Inferred from the Xdh Gene

Author keywords

Drosophila saltans group; Xdh; molecular evolution; phylogeny; maximum likelihood; nucleotide substitution rate.

Indexed keywords

ALCOHOL DEHYDROGENASE; CYTOCHROME C OXIDASE; DNA; RNA 28S; XANTHINE DEHYDROGENASE;

EID: 0033208815     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1999.0631     Document Type: Article
Times cited : (28)

References (55)
  • 1
    • 0015714964 scopus 로고
    • Chromosomal polymorphism in the saltans group of Drosophila. I. The saltans subgroup
    • Bicudo H. E. M. C. Chromosomal polymorphism in the saltans group of Drosophila. I. The saltans subgroup. Genetica. 44:1973a;550-552.
    • (1973) Genetica , vol.44 , pp. 550-552
    • Bicudo, H.E.M.C.1
  • 2
    • 0015792537 scopus 로고
    • Reproductive isolation in the saltans group of Drosophila. I. The saltans subgroup
    • Bicudo H. E. M. C. Reproductive isolation in the saltans group of Drosophila. I. The saltans subgroup. Genetica. 44:1973b;313-329.
    • (1973) Genetica , vol.44 , pp. 313-329
    • Bicudo, H.E.M.C.1
  • 3
    • 0030851812 scopus 로고    scopus 로고
    • A phylogenetic perspective on P transposable element evolution in Drosophila
    • Clark J. B., Kidwell M. G. A phylogenetic perspective on P transposable element evolution in Drosophila. Proc. Natl. Acad. Sci. USA. 94:1997;11428-11433.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 11428-11433
    • Clark, J.B.1    Kidwell, M.G.2
  • 4
    • 0029098218 scopus 로고
    • Molecular evolution of P transposable elements in the genus Drosophila. I. The saltans and willistoni Species Groups
    • Clark J. B., Altheide T. K., Schlosser M. J., Kidwell M. G. Molecular evolution of P transposable elements in the genus Drosophila. I. The saltans and willistoni Species Groups. Mol. Biol. Evol. 12:1995;902-913.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 902-913
    • Clark, J.B.1    Altheide, T.K.2    Schlosser, M.J.3    Kidwell, M.G.4
  • 5
    • 0022520431 scopus 로고
    • The distribution of P-element sequences in Drosophila: The willistoni and saltans Species Groups
    • Daniels S. B., Strausbaugh L. D. The distribution of P-element sequences in Drosophila: The willistoni and saltans Species Groups. J. Mol. Evol. 23:1986;138-148.
    • (1986) J. Mol. Evol. , vol.23 , pp. 138-148
    • Daniels, S.B.1    Strausbaugh, L.D.2
  • 6
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:1981;368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 7
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 0021003230 scopus 로고
    • Estimates of DNA and protein sequence divergence: An examination of some assumptions
    • Golding G. B. Estimates of DNA and protein sequence divergence: An examination of some assumptions. Mol. Biol. Evol. 1:1983;125-142.
    • (1983) Mol. Biol. Evol. , vol.1 , pp. 125-142
    • Golding, G.B.1
  • 10
    • 0027526039 scopus 로고
    • Statistical tests of models of DNA substitution
    • Goldman N. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:1993;182-198.
    • (1993) J. Mol. Evol. , vol.36 , pp. 182-198
    • Goldman, N.1
  • 11
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M., Kishino H., Yano T. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:1985;160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 12
    • 0031436890 scopus 로고    scopus 로고
    • Phylogeny estimation and hypothesis testing using maximum likelihood
    • Huelsenbeck J. P., Crandall K. A. Phylogeny estimation and hypothesis testing using maximum likelihood. Annu. Rev. Ecol. Syst. 28:1997;437-466.
    • (1997) Annu. Rev. Ecol. Syst. , vol.28 , pp. 437-466
    • Huelsenbeck, J.P.1    Crandall, K.A.2
  • 13
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H.N. Munro. New York: Academic Press
    • Jukes T. H., Cantor C. R. Evolution of protein molecules. Munro H. N. Mammalian Protein Metabolism. 1969;21-132 Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 14
    • 0001913785 scopus 로고
    • Sample preparation from blood, cells, and other fluids
    • M.A. Innis, D.H. Gelfand, J.J. Sninsky, & T.J. White. San Diego: Academic Press
    • Kawasaki E. S. Sample preparation from blood, cells, and other fluids. Innis M. A., Gelfand D. H., Sninsky J. J., White T. J. PCR Protocols: A Guide to Methods and Applications. 1990;146-152 Academic Press, San Diego.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 146-152
    • Kawasaki, E.S.1
  • 15
    • 0023333651 scopus 로고
    • Sequence of the structural gene for xanthine dehydrogenase (rosy locus) in Drosophila melanogaster
    • Keith T. P., Riley M. A., Kreitman M., Lewontin R. C., Curtis D., Chambers G. Sequence of the structural gene for xanthine dehydrogenase (rosy locus) in Drosophila melanogaster. Genetics. 116:1987;67-73.
    • (1987) Genetics , vol.116 , pp. 67-73
    • Keith, T.P.1    Riley, M.A.2    Kreitman, M.3    Lewontin, R.C.4    Curtis, D.5    Chambers, G.6
  • 16
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 17
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • Kishino H., Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:1989;170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 19
    • 0029960344 scopus 로고    scopus 로고
    • Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates
    • Kumar S. Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates. Genetics. 143:1996;537-548.
    • (1996) Genetics , vol.143 , pp. 537-548
    • Kumar, S.1
  • 20
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart P. J., Steel M. A., Hendy M. D., Penny D. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11:1994;605-612.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 21
    • 0001425458 scopus 로고
    • Notes on the taxonomy, morphology, and distribution of the saltans group of Drosophila, with descriptions of four new species
    • Magalhães L. E. Notes on the taxonomy, morphology, and distribution of the saltans group of Drosophila, with descriptions of four new species. Univ. Tex. Pub. 6205:1962;135-154.
    • (1962) Univ. Tex. Pub. , vol.6205 , pp. 135-154
    • Magalhães, L.E.1
  • 22
    • 0041143744 scopus 로고
    • Estudo da genitalia masculina de Drosophila (Diptera)
    • Magalhães L. E., Björnberg A. J. S. Estudo da genitalia masculina de Drosophila (Diptera). Rev. Bras. Biol. 16:1957;273-280.
    • (1957) Rev. Bras. Biol. , vol.16 , pp. 273-280
    • Magalhães, L.E.1    Björnberg, A.J.S.2
  • 23
    • 0039956681 scopus 로고
    • Duas novas espécies de Drosophila do grupo saltans (Drosophilidae, Diptera)
    • Mourão C. A., Bicudo H. E. M. C. Duas novas espécies de Drosophila do grupo saltans (Drosophilidae, Diptera). Pap. Dept. Zool. S. Paulo. 20:1967;123-134.
    • (1967) Pap. Dept. Zool. S. Paulo , vol.20 , pp. 123-134
    • Mourão, C.A.1    Bicudo, H.E.M.C.2
  • 24
    • 0031843061 scopus 로고
    • Phylogeny of the Drosophila saltans Species Group based on combined analysis of nuclear and mitochondrial DNA sequences
    • O'Grady P. M., Clark J. B., Kidwell M. G. Phylogeny of the Drosophila saltans Species Group based on combined analysis of nuclear and mitochondrial DNA sequences. Mol. Biol. Evol. 15:1988;656-664.
    • (1988) Mol. Biol. Evol. , vol.15 , pp. 656-664
    • O'Grady, P.M.1    Clark, J.B.2    Kidwell, M.G.3
  • 25
    • 0028255725 scopus 로고
    • Combining data in phylogenetic systematics: An empirical approach using three molecular data sets in the Solanaceae
    • Olmstead R. G., Sweere J. A. Combining data in phylogenetic systematics: An empirical approach using three molecular data sets in the Solanaceae. Syst. Biol. 43:1994;467-481.
    • (1994) Syst. Biol. , vol.43 , pp. 467-481
    • Olmstead, R.G.1    Sweere, J.A.2
  • 28
    • 0027440796 scopus 로고
    • Molecular phylogeny of Drosophila based on ribosomal RNA sequences
    • Pélandakis M., Solignac M. Molecular phylogeny of Drosophila based on ribosomal RNA sequences. J. Mol. Evol. 37:1993;525-543.
    • (1993) J. Mol. Evol. , vol.37 , pp. 525-543
    • Pélandakis, M.1    Solignac, M.2
  • 29
    • 0026278999 scopus 로고
    • Molecular phylogeny of the subgenus Sophophora of Drosophila derived from large subunit of ribosomal RNA sequences
    • Pélandakis M., Higgins D. G., Solignac M. Molecular phylogeny of the subgenus Sophophora of Drosophila derived from large subunit of ribosomal RNA sequences. Genetica. 84:1991;87-94.
    • (1991) Genetica , vol.84 , pp. 87-94
    • Pélandakis, M.1    Higgins, D.G.2    Solignac, M.3
  • 31
    • 0024567840 scopus 로고
    • Nucleotide sequence of the Xdh region in Drosophila pseudoobscura and an analysis of the evolution of synonymous codons
    • Riley M. A. Nucleotide sequence of the Xdh region in Drosophila pseudoobscura and an analysis of the evolution of synonymous codons. Mol. Biol. Evol. 6:1989;33-52.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 33-52
    • Riley, M.A.1
  • 32
    • 0026513924 scopus 로고
    • Nucleotide polymorphism at the xanthine dehydrogenase locus in Drosophila pseudoobscura
    • Riley M. A., Kaplan S. R., Veuille M. Nucleotide polymorphism at the xanthine dehydrogenase locus in Drosophila pseudoobscura. Mol. Biol. Evol. 9:1992;56-69.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 56-69
    • Riley, M.A.1    Kaplan, S.R.2    Veuille, M.3
  • 33
    • 0002797404 scopus 로고
    • Evolutionary analysis of plant DNA sequences
    • Ritland K., Clegg M. T. Evolutionary analysis of plant DNA sequences. Am. Nat. 130:1987;S74-S100.
    • (1987) Am. Nat. , vol.130 , pp. 74-S100
    • Ritland, K.1    Clegg, M.T.2
  • 34
    • 0028813932 scopus 로고
    • Tests of the applicability of several substitution models for DNA sequence data
    • Rzhetsky A., Nei M. Tests of the applicability of several substitution models for DNA sequence data. Mol. Biol. Evol. 12:1995;131-151.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 131-151
    • Rzhetsky, A.1    Nei, M.2
  • 35
    • 0028266426 scopus 로고
    • Comparative evolutionary analysis of rDNA regions in Drosophila
    • Schlotterer C. Comparative evolutionary analysis of rDNA regions in Drosophila. Mol. Biol. Evol. 11:1994;513-522.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 513-522
    • Schlotterer, C.1
  • 36
    • 0040549629 scopus 로고
    • Morphological differences between siblings species of Drosophila
    • Spassky B. Morphological differences between siblings species of Drosophila. Univ. Tex. Pub. 5721:1957;48-61.
    • (1957) Univ. Tex. Pub. , vol.5721 , pp. 48-61
    • Spassky, B.1
  • 37
    • 0003117672 scopus 로고
    • The classification of the genus Drosophila, with descriptions of nine new species
    • Sturtevant A. H. The classification of the genus Drosophila, with descriptions of nine new species. Univ. Tex. Pub. 4213:1942;6-51.
    • (1942) Univ. Tex. Pub. , vol.4213 , pp. 6-51
    • Sturtevant, A.H.1
  • 38
    • 0028807391 scopus 로고
    • Among-site rate variation and phylogenetic analysis of the 12S rRNA in sigmodontine rodents
    • Sullivan J., Holsinger K. E., Simon C. Among-site rate variation and phylogenetic analysis of the 12S rRNA in sigmodontine rodents. Mol. Biol. Evol. 12:1995;988-1001.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 988-1001
    • Sullivan, J.1    Holsinger, K.E.2    Simon, C.3
  • 40
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • D.M. Hillis, C. Moritz, & B.K. Mable. Sunderland: Sinauer
    • Swofford D. L., Olsen G. J., Waddell P. J., Hillis D. M. Phylogenetic inference. Hillis D. M., Moritz C., Mable B. K. Molecular Systematics. 1996;407-514 Sinauer, Sunderland.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 41
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpazes
    • Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpazes. Mol. Biol. Evol. 10:1993;512-526.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 42
    • 0015775452 scopus 로고
    • Comparisons of gene arrangements in four species of the saltans group of Drosophila
    • Targa H. J. Comparisons of gene arrangements in four species of the saltans group of Drosophila. Rev. Bras. Biol. 33:1973;353-360.
    • (1973) Rev. Bras. Biol. , vol.33 , pp. 353-360
    • Targa, H.J.1
  • 45
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems on the analysis of DNA sequences
    • Tavaré S. Some probabilistic and statistical problems on the analysis of DNA sequences. Lect. Math. Life Sci. 17:1986;57-86.
    • (1986) Lect. Math. Life Sci. , vol.17 , pp. 57-86
    • Tavaré, S.1
  • 46
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 47
    • 0000453649 scopus 로고
    • The phylogeny, ecology and geography of Drosophila
    • R.C. King. New York: Plenum
    • Throckmorton L. H. The phylogeny, ecology and geography of Drosophila. King R. C. Handbook of Genetics. 1975;421-436 Plenum, New York.
    • (1975) Handbook of Genetics , pp. 421-436
    • Throckmorton, L.H.1
  • 48
    • 0008793983 scopus 로고
    • XVI. Changes with evolution of pteridine accumulations in species of the saltans group of the genus Drosophila
    • Throckmorton L. H., Magalhães L. E. XVI. Changes with evolution of pteridine accumulations in species of the saltans group of the genus Drosophila. Univ. Tex. Pub. 6205:1962;489-505.
    • (1962) Univ. Tex. Pub. , vol.6205 , pp. 489-505
    • Throckmorton, L.H.1    Magalhães, L.E.2
  • 49
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang Z. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39:1994;105-111.
    • (1994) J. Mol. Evol. , vol.39 , pp. 105-111
    • Yang, Z.1
  • 50
    • 0030451420 scopus 로고    scopus 로고
    • The among-site rate variation and its impact on phylogenetic analyses
    • Yang Z. The among-site rate variation and its impact on phylogenetic analyses. TREE. 11:1996a;367-372.
    • (1996) TREE , vol.11 , pp. 367-372
    • Yang, Z.1
  • 51
    • 0029970097 scopus 로고    scopus 로고
    • Maximum likelihood models for combined analyses of multiple sequence data
    • Yang Z. Maximum likelihood models for combined analyses of multiple sequence data. J. Mol. Evol. 42:1996b;587-596.
    • (1996) J. Mol. Evol. , vol.42 , pp. 587-596
    • Yang, Z.1
  • 52
    • 0007553324 scopus 로고    scopus 로고
    • Distributed by the author, Department of Integrative Biology, University of California, Berkeley.
    • Yang, Z. 1997, PAML: phylogenetic analysis by maximum likelihood. Version 1.3. Distributed by the author, Department of Integrative Biology, University of California, Berkeley.
    • (1997) PAML: Phylogenetic Analysis by Maximum Likelihood. Version 1.3
    • Yang, Z.1
  • 53
    • 0029892459 scopus 로고    scopus 로고
    • New parsimony-based methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites and comparison with likelihood methods
    • Yang Z., Kumar S. New parsimony-based methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites and comparison with likelihood methods. Mol. Biol. Evol. 13:1996;650-659.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 650-659
    • Yang, Z.1    Kumar, S.2
  • 54
    • 0028805929 scopus 로고
    • Molecular evolution of the Hepatitis B virus genome
    • Yang Z., Lauder I. J., Lin H. J. Molecular evolution of the Hepatitis B virus genome. J. Mol. Evol. 41:1995;587-596.
    • (1995) J. Mol. Evol. , vol.41 , pp. 587-596
    • Yang, Z.1    Lauder, I.J.2    Lin, H.J.3
  • 55
    • 0028267146 scopus 로고
    • Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation
    • Yang Z., Goldman N., Friday N. E. Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation. Mol. Biol. Evol. 11:1994;316-324.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 316-324
    • Yang, Z.1    Goldman, N.2    Friday, N.E.3


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