메뉴 건너뛰기




Volumn 30, Issue 3, 2006, Pages 437-452

A systematic framework for the design of reduced-order models for signal transduction pathways from a control theoretic perspective

Author keywords

Bistable behavior; Control; Parameter estimation; Reduced order model; Signal transduction

Indexed keywords

AMPLIFICATION; CELLS; FEEDBACK; GENETIC ALGORITHMS; ITERATIVE METHODS; PARAMETER ESTIMATION;

EID: 30344478862     PISSN: 00981354     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compchemeng.2005.10.003     Document Type: Article
Times cited : (11)

References (42)
  • 1
    • 0033627153 scopus 로고    scopus 로고
    • Kinetic mechanism reduction based on an integer programming approach
    • I.P. Androulakis Kinetic mechanism reduction based on an integer programming approach AIChE Journal 46 2 2000 361 371
    • (2000) AIChE Journal , vol.46 , Issue.2 , pp. 361-371
    • Androulakis, I.P.1
  • 2
    • 0034914737 scopus 로고    scopus 로고
    • A computational study of feedback effects on signal dynamics in a mitogen-activated protein kinase (MAPK) pathway model
    • A.R. Asthagiri, and D.A. Lauffenburger A computational study of feedback effects on signal dynamics in a mitogen-activated protein kinase (MAPK) pathway model Biotechnology Progress 17 2001 227 239
    • (2001) Biotechnology Progress , vol.17 , pp. 227-239
    • Asthagiri, A.R.1    Lauffenburger, D.A.2
  • 3
    • 0035847092 scopus 로고    scopus 로고
    • C-Jun N-terminal kinase activation in Xenopus laevis eggs and embryos. A possible non-genomic role for the JNK signaling pathway
    • C.P. Bagowski, W. Xiong, and J.E. Ferrell Jr. c-Jun N-terminal kinase activation in Xenopus laevis eggs and embryos. A possible non-genomic role for the JNK signaling pathway Journal of Biological Chemistry 276 2 2001 1459 1465
    • (2001) Journal of Biological Chemistry , vol.276 , Issue.2 , pp. 1459-1465
    • Bagowski, C.P.1    Xiong, W.2    Ferrell Jr., J.E.3
  • 4
    • 17144456808 scopus 로고    scopus 로고
    • Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion
    • A. Becskei, B. Seraphin, and L. Serrano Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion EMBO Journal 20 10 2001 2528 2535
    • (2001) EMBO Journal , vol.20 , Issue.10 , pp. 2528-2535
    • Becskei, A.1    Seraphin, B.2    Serrano, L.3
  • 5
    • 0033555859 scopus 로고    scopus 로고
    • Emergent properties of networks of biological signaling pathways
    • U.S. Bhalla, and R. Iyengar Emergent properties of networks of biological signaling pathways Science 283 1999 381 387
    • (1999) Science , vol.283 , pp. 381-387
    • Bhalla, U.S.1    Iyengar, R.2
  • 6
    • 0009952303 scopus 로고    scopus 로고
    • Robustness of the bistable behavior of a biological signaling feedback loop
    • U.S. Bhalla, and R. Iyengar Robustness of the bistable behavior of a biological signaling feedback loop Chaos 11 1 2001 221 226
    • (2001) Chaos , vol.11 , Issue.1 , pp. 221-226
    • Bhalla, U.S.1    Iyengar, R.2
  • 7
    • 0037047611 scopus 로고    scopus 로고
    • MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network
    • U.S. Bhalla, P.T. Ram, and R. Iyengar MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network Science 297 5583 2002 1018 1023
    • (2002) Science , vol.297 , Issue.5583 , pp. 1018-1023
    • Bhalla, U.S.1    Ram, P.T.2    Iyengar, R.3
  • 8
    • 0242391224 scopus 로고    scopus 로고
    • Optimally-reduced kinetic models: Reaction elimination in large-scale kinetic mechanisms
    • B. Bhattacharjee, D.A. Schwer, P.I. Barton, and W.H. Green Jr. Optimally-reduced kinetic models: Reaction elimination in large-scale kinetic mechanisms Combustion and Flame 135 3 2003 191 208
    • (2003) Combustion and Flame , vol.135 , Issue.3 , pp. 191-208
    • Bhattacharjee, B.1    Schwer, D.A.2    Barton, P.I.3    Green Jr., W.H.4
  • 9
    • 0034613112 scopus 로고    scopus 로고
    • Differential feedback regulation of the MAPK cascade underlies the quantitative differences in EGF and NGF signaling in PC12 cells
    • F.A. Brightman, and D.A. Fell Differential feedback regulation of the MAPK cascade underlies the quantitative differences in EGF and NGF signaling in PC12 cells FEBS Letters 482 2000 169 174
    • (2000) FEBS Letters , vol.482 , pp. 169-174
    • Brightman, F.A.1    Fell, D.A.2
  • 11
    • 0025418386 scopus 로고
    • Representation of process trends. Part I. A formal representation framework
    • J.T. Cheung, and G. Stephanopoulos Representation of process trends. Part I. A formal representation framework Computers and Chemical Engineering 14 4/5 1990 495 510
    • (1990) Computers and Chemical Engineering , vol.14 , Issue.45 , pp. 495-510
    • Cheung, J.T.1    Stephanopoulos, G.2
  • 12
    • 1042279551 scopus 로고    scopus 로고
    • A novel interval-halving framework for automated identification of process trends
    • S. Dash, M.R. Maurya, R. Rengaswamy, and V. Venkatasubramanian A novel interval-halving framework for automated identification of process trends AIChE Journal 50 1 2004 149 162
    • (2004) AIChE Journal , vol.50 , Issue.1 , pp. 149-162
    • Dash, S.1    Maurya, M.R.2    Rengaswamy, R.3    Venkatasubramanian, V.4
  • 14
    • 0030445778 scopus 로고    scopus 로고
    • Tripping the switch fantastic: How a protein kinase cascade can convert graded inputs into switch-like outputs
    • J.E. Ferrell Jr. Tripping the switch fantastic: How a protein kinase cascade can convert graded inputs into switch-like outputs Trends in Biochemical Sciences 21 12 1996 460 466
    • (1996) Trends in Biochemical Sciences , vol.21 , Issue.12 , pp. 460-466
    • Ferrell Jr., J.E.1
  • 15
    • 0033214147 scopus 로고    scopus 로고
    • Xenopus oocyte maturation: New lessons from a good egg
    • J.E. Ferrell Jr. Xenopus oocyte maturation: New lessons from a good egg Bioessays 21 1999 833 842
    • (1999) Bioessays , vol.21 , pp. 833-842
    • Ferrell Jr., J.E.1
  • 16
    • 0036532226 scopus 로고    scopus 로고
    • Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
    • J.E. Ferrell Jr. Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability Current Opinions in Cell Biology 14 2 2002 140 148
    • (2002) Current Opinions in Cell Biology , vol.14 , Issue.2 , pp. 140-148
    • Ferrell Jr., J.E.1
  • 18
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • T.S. Gardner, C.R. Cantor, and J.J. Collins Construction of a genetic toggle switch in Escherichia coli Nature 403 2000 339 342
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 19
    • 30344479655 scopus 로고    scopus 로고
    • The tricarboxylic acid cycle
    • 2nd ed. Harcourt Brace College Publishers New York
    • R.H. Garrett, and C.M. Grisham The tricarboxylic acid cycle Biochemistry 2nd ed. 1999 Harcourt Brace College Publishers New York 639 671
    • (1999) Biochemistry , pp. 639-671
    • Garrett, R.H.1    Grisham, C.M.2
  • 23
    • 0000923201 scopus 로고
    • Automatic generation of qualitative description of process trends for fault detection and diagnosis
    • M. Janusz, and V. Venkatasubramanian Automatic generation of qualitative description of process trends for fault detection and diagnosis Engineering Applications of Artificial Intelligence 4 5 1991 329 339
    • (1991) Engineering Applications of Artificial Intelligence , vol.4 , Issue.5 , pp. 329-339
    • Janusz, M.1    Venkatasubramanian, V.2
  • 24
    • 0030771387 scopus 로고    scopus 로고
    • Ras effectors and their role in mitogenesis and oncogenesis
    • T. Joneson, and D. Bar-Sagi Ras effectors and their role in mitogenesis and oncogenesis Journal of Molecular Medicine 75 1997 587 593
    • (1997) Journal of Molecular Medicine , vol.75 , pp. 587-593
    • Joneson, T.1    Bar-Sagi, D.2
  • 27
    • 0037537988 scopus 로고    scopus 로고
    • Reverse engineering and automatic synthesis of metabolic pathways from observed data using genetic programming
    • Stanford University, Stanford, CA, USA
    • Koza, J. R., Mydlowec, W., Lanza, G., Yu, J., & Keane, M.A. (2000). Reverse engineering and automatic synthesis of metabolic pathways from observed data using genetic programming. Technical-Report: SMI-2000-0851, Stanford University, Stanford, CA, USA.
    • (2000) Technical-Report: SMI-2000-0851
    • Koza, J.R.1    Mydlowec, W.2    Lanza, G.3    Yu, J.4    Keane, M.A.5
  • 28
  • 29
    • 0000169232 scopus 로고
    • An algorithm for least-squares estimation of nonlinear parameters
    • D.W. Marquardt An algorithm for least-squares estimation of nonlinear parameters SIAM Journal of Applied Mathematics 11 1963 431 441
    • (1963) SIAM Journal of Applied Mathematics , vol.11 , pp. 431-441
    • Marquardt, D.W.1
  • 32
    • 0032836319 scopus 로고    scopus 로고
    • Activation of Ras by phorbol esters in cardiac myocytes: Role of guanine nucleotide exchange factor
    • C. Montessuit, and A. Thorburn Activation of Ras by phorbol esters in cardiac myocytes: Role of guanine nucleotide exchange factor FEBS Letters 460 1 1999 57 60
    • (1999) FEBS Letters , vol.460 , Issue.1 , pp. 57-60
    • Montessuit, C.1    Thorburn, A.2
  • 33
    • 0019533482 scopus 로고
    • Principal component analysis in linear systems: Controllability, observability and model reduction
    • B.C. Moore Principal component analysis in linear systems: Controllability, observability and model reduction IEEE Transactions of Automatic Control 26 1981 17 32
    • (1981) IEEE Transactions of Automatic Control , vol.26 , pp. 17-32
    • Moore, B.C.1
  • 34
  • 35
    • 0032025439 scopus 로고    scopus 로고
    • Simplification of mathematical models of chemical reaction systems
    • M.S. Okino, and M.L. Mavrovouniotis Simplification of mathematical models of chemical reaction systems Chemical Reviews 98 2 1998 391 408
    • (1998) Chemical Reviews , vol.98 , Issue.2 , pp. 391-408
    • Okino, M.S.1    Mavrovouniotis, M.L.2
  • 36
    • 0033119133 scopus 로고    scopus 로고
    • Model reduction for chemical kinetics: An optimization approach
    • L. Petzold, and W. Zhu Model reduction for chemical kinetics: An optimization approach AIChE Journal 45 4 1999 869 886
    • (1999) AIChE Journal , vol.45 , Issue.4 , pp. 869-886
    • Petzold, L.1    Zhu, W.2
  • 38
    • 0033783132 scopus 로고    scopus 로고
    • GTPase-activating proteins for heterotrimeric G-proteins: Regulators of G protein signaling (RGS) and RGS-like proteins
    • E.M. Ross, and T.M. Wilkie GTPase-activating proteins for heterotrimeric G-proteins: Regulators of G protein signaling (RGS) and RGS-like proteins Annual Review of Biochemistry 69 2000 795 827
    • (2000) Annual Review of Biochemistry , vol.69 , pp. 795-827
    • Ross, E.M.1    Wilkie, T.M.2
  • 40
    • 0042586670 scopus 로고
    • Control relevant model reduction: A reduced-order model for 'model IV' fluid catalytic cracking units
    • F.Z. Tatrai, P.A. Lant, P.L. Lee, I.T. Cameron, and R.B. Newell Control relevant model reduction: A reduced-order model for 'model IV' fluid catalytic cracking units Journal of Process Control 4 1 1994 3 14
    • (1994) Journal of Process Control , vol.4 , Issue.1 , pp. 3-14
    • Tatrai, F.Z.1    Lant, P.A.2    Lee, P.L.3    Cameron, I.T.4    Newell, R.B.5
  • 41
    • 0005541614 scopus 로고    scopus 로고
    • Nonlinear model reduction of chemical reaction systems
    • N. Vora, and P. Daoutidis Nonlinear model reduction of chemical reaction systems AIChE Journal 47 10 2001 2320 2332
    • (2001) AIChE Journal , vol.47 , Issue.10 , pp. 2320-2332
    • Vora, N.1    Daoutidis, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.