Phylogeny of the Callandrena subgenus of Andrena (Hymenoptera: Andrenidae) based on mitochondrial and nuclear DNA data: Polyphyly and convergent evolution

Molecular Phylogenetics and Evolution

Volumn 38, Issue 2, 2006, Pages 330-343

  Larkin, Leah L ^a,c   Neff, John L ^b   Simpson, Beryl B ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b Central Texas Melittological Institute   (United States)

^c UNIVERSITY OF NEW MEXICO   (United States)

Author keywords

Andrena; Andrenidae; Callandrena; Cytochrome oxidase; Elongation factor 1 ; Parametric bootstrap; Phylogeny

Indexed keywords

AMINOACYL TRANSFER RNA; CYTOCHROME C OXIDASE; ELONGATION FACTOR 1; MITOCHONDRIAL DNA; TRNA, LEUCINE; TRNA, LEUCINE-;

ANIMAL; ARTICLE; BAYES THEOREM; BEE; CELL NUCLEUS; CLASSIFICATION; GENETICS; MOLECULAR EVOLUTION; NUCLEIC ACID DATABASE; PHYLOGENY;

ANIMALS; BAYES THEOREM; BEES; CELL NUCLEUS; DATABASES, NUCLEIC ACID; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; PEPTIDE ELONGATION FACTOR 1; PHYLOGENY; RNA, TRANSFER, AMINO ACYL;

ANDRENIDAE; APOIDEA; ASTERACEAE; CALLANDRENA; HYMENOPTERA;

EID: 30344449788     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2005.10.003     Document Type: Article

References (40)

1. S. Cho, A. Mitchell, J.C. Regier, C. Mitter, R.W. Poole, T.P. Friedlander, and S. Zhao A highly conserved nuclear gene for low-level phylogenetics: Elongation Factor-1α recovers morphology-based tree for heliothine moths Mol. Biol. Evol. 12 1995 650 656
2. D.O. Clary, and D.R. Wolstenholme The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization and genetic code J. Mol. Evol. 22 1985 252 271
3. R.H. Crozier, and Y.C. Crozier The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization Genetics 133 1993 97 117
4. R.W. Cruden Pollination biology of Nemophila menziesii Hydrophyllaceae with comments on the evolution of oligolectic bees Evolution 26 1972 373 389
5. C.W. Cunningham Can three incongruence tests predict when data should be combined? Mol. Biol. Evol. 14 1997 733 740
6. B.N. Danforth, and S. Ji Elongation factor-1α occurs as two copies in bees: implications for phylogenetic analysis of EF-1α sequences in insects Mol. Biol. Evol. 15 1998 225 235
7. B.N. Danforth, H. Sauquet, and L. Packer Phylogeny of the bee genus Halictus (Hymenoptera: Halictidae) based on parsimony and likelihood analysis of nuclear EF-1α sequence data Mol. Phylogenet. Evol. 13 1999 605 618
8. J.S. Farris, M. Källersjö, A.G. Kluge, and C. Bult Testing significance of incongruence Cladistics 10 1994 315 319
9. J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
10. Gene Codes Corporation, 1998. Sequencher 3.1.1. Gene Codes Corporation, Ann Arbor, MI.
11. Gilbert, D.G., 1992. SeqApp 1.9a169. 〈ftp://ftp.bio.indiana.edu/ molbio/seqapp/〉, Ann Arbor, MI.
12. N. Goldman Statistical tests of models of DNA substitution J. Mol. Evol. 36 1993 182 198
13. N. Goldman, J.P. Anderson, and A.G. Rodrigo Likelihood-based tests of topologies in phylogenetics Syst. Biol. 49 2000 652 670
14. Gusenleitner, F., Schwarz, M., 2002. Weltweite Checkliste der Bienengattung Andrena mit Bemerkungen und Ergänzungen zu paläarktischen Arten (Hymenoptera, Apidae, Andreninae, Andrena). Entomofauna: Zeitschrift für Entomologie.
15. D.M. Hillis Discriminating between phylogenetic signal and random noise in DNA sequences M.M. Miyamoto J. Cracraft Phylogenetic Analysis of DNA Sequences 1991 Oxford University Press New York 278 294
16. D.M. Hillis, and J.P. Huelsenbeck Signal, noise, and reliability in molecular phylogenetic analysis J. Hered. 83 1992 189 195
17. J.P. Huelsenbeck, and F. Ronquist MRBAYES: Bayesian analysis of phylogeny Bioinformatics 17 2001 754 755
18. S.A. Kelchner The evolution of noncoding chloroplast DNA and its application in plant systematics Ann. Mo. Bot. Gard. 87 2000 482 498
19. W.E. LaBerge A revision of the bees of the genus Andrena of the Western Hemisphere. Part I. Callandrena (Hymenoptera: Andrenidae) Bull. Univ. Nebr. State Mus. 7 1967 1 316
20. LaBerge, W.E., 1986. The zoogeography of Andrena Fabricius (Hymenoptera, Andrenidae) of the Western Hemisphere. In: Clambey, G.K., Pemble, R.H. (Eds.), The Prairie: Past, Present and Future. Proceedings of the Ninth North American Prairie Conference. Tri-College University Center for Environmental Studies, Moorhead, MN, pp. 110-115.
21. U.N. Lanham A subgeneric classification of the New World bees of the genus Andrena. Univ Calif. Publ. Entomol. 8 1949 183 238
22. L.L. Larkin Four new species of fall Andrena from the southwestern United States J. Kansas Entomol. Soc. 77 2004 254 268
23. C.-P. Lin, and B.N. Danforth How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets Mol. Phylogenet. Evol. 30 2004 686 702
24. J.V. Lopez, N. Yuhki, R. Masuda, W. Modi, and S.J. O'Brien NUMT, a recent transfer and tandem amplification of mitochondrial DNA to the nuclear genome of the domestic cat J. Mol. Evol. 39 1994 174 190
25. C.D. Michener New Peruvian genus and a generic review of Andreninae (Hymenoptera, Apoidea, Andrenidae) Ann. Entomol. Soc. Am. 79 1986 62 72
26. C.D. Michener The Bees of the World 2000 Johns Hopkins Press Baltimore, MD
27. Molina-Pardo, A., 1973. A phenetic analysis of New World bees of five subgenera of the genus Andrena (Hymenoptera: Apoidea). Ph.D. Dissertation, Entomology, University of Illinois at Urbana-Champaign.
28. J.L. Neff, and L.L. Larkin Andrena chaparralensis new species, a new vernal bee associated with Asteraceae on the south Texas plains (Hymenoptera: Apoidea: Andrenidae) J. Kansas Entomol. Soc. 75 2002 268 273
29. D. Posada, and K.A. Crandall MODELTEST: Testing the model of DNA substitution Bioinformatics 14 1998 817 818
30. A. Rambaut, and N.C. Grassly Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees Comput. Appl. Biosci. 13 1997 235 238
31. C. Simon, F. Frati, A.T. Beckenbach, B.J. Crespi, H. Liu, and P.K. Flook Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers Ann. Entomol. Soc. Am. 87 1994 651 701
32. S.D. Sipes, and P.G. Wolf Phylogenetic relationships within Diadasia, a group of specialist bees Mol. Phylogenet. Evol. 19 2001 144 156
33. J. Sullivan, Z. Abdo, P. Joyce, and D.L. Swofford Evaluating the perfomance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation Mol. Biol. Evol. 22 2005 1386 1392
34. D.L. Swofford, and G.J. Olsen Phylogeny reconstruction D.M. Hillis C. Moritz Molecular Systematics 1990 Sinauer Sunderland, MA 411 501
35. D.L. Swofford, G.J. Olsen, P.J. Waddell, and D.M. Hillis Phylogenetic inference D.M. Hillis C. Moritz B.K. Mable Molecular Systematics 1996 Sinauer Sunderland, MA 407 514
36. Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods) 4. Sinauer Associates, Sunderland, MA.
37. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
38. K. Warncke Die untergattungen der westpaläarktischen Bienengattung Andrena F Mem. Estud. Mus. Zool. Univ. Coimbra 307 1968 1 110
39. L.G. Willis, M.L. Winston, and B.M. Honda Phylogenetic relationships in the honeybee (genus Apis) as determined by the sequence of the cytochrome oxidase II region of mitochondrial DNA Mol. Phylogenet. Evol. 1 1992 169 178
40. Z. Yang, N. Goldman, and A.E. Friday Maximum likelihood trees from DNA sequences: a peculiar statistical estimation problem Syst. Biol. 44 1995 384 399