Polyamines affect diversely the antibiotic potency: Insight gained from kinetic studies of the blasticidin S and spiramycin interactions with functional ribosomes

Journal of Biological Chemistry

Volumn 279, Issue 25, 2004, Pages 26518-26525

  Petropoulos, Alexandros D ^a   Xaplanteri, Maria A ^a   Dinos, George P ^a   Wilson, Daniel N ^b   Kalpaxis, Dimitrios L ^a  

^a UNIVERSITY OF PATRAS   (Greece)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; CATALYSIS; ENZYME INHIBITION; ESCHERICHIA COLI; ISOMERIZATION; RNA;

ANTIBIOTIC POTENCY; PEPTIDE BOND; PUROMYCIN;

ANTIBIOTICS;

AMINOHEXOSYLCYTOSINE NUCLEOSIDE; ANTIBIOTIC AGENT; BLASTICIDIN S; ENZYME INHIBITOR; MACROLIDE; PEPTIDYLTRANSFERASE; POLYAMINE; PUROMYCIN; SPERMINE; SPIRAMYCIN; TRANSFER RNA; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; CROSS LINKING; CRYSTALLOGRAPHY; DRUG BINDING; DRUG POTENCY; ESCHERICHIA COLI; ISOMERIZATION; KINETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; RIBOSOME;

ANTI-BACTERIAL AGENTS; BASE SEQUENCE; BINDING SITES; BINDING, COMPETITIVE; ESCHERICHIA COLI; KINETICS; MODELS, BIOLOGICAL; MODELS, CHEMICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEOSIDES; PEPTIDES; POLYAMINES; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PUROMYCIN; RIBOSOMES; RNA, RIBOSOMAL, 23S; SPIRAMYCIN; TIME FACTORS;

ESCHERICHIA COLI;

EID: 2942705913     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M313634200     Document Type: Article

References (41)

1. Theocharis, D. A., Kalpaxis, D. L., and Coutsogeorgopoulos, C. (1986) Eur. J. Biochem. 159, 479-483
2. Ballesta, J. P. G., and Lasaro, E. C. (1990) in The Ribosome: Structure, Function, and Evolution (Hill, W., Dahlberg, A., Garrett, R., Moore, P., Schlessinger, D., and Warner, J. eds) pp. 502-510, AMS Press, Washington, D. C.
3. Pestka, S. (1974) Methods Enzymol. 30, 261-282
4. Pestka, S. (1974) Antimicrob. Agents Chemother. 5, 255-267
5. Pestka, S. (1972) J. Biol. Chem. 247, 4669-4678
6. Kalpaxis, D. L., Theocharis, D. A., and Coutsogeorgopoulos, C. (1986) Eur. J. Biochem. 154, 267-271
7. Rodriguez-Fonseca, C., Amils, R., and Garrett, R. A. (1995) J. Mol. Biol. 247, 224-235
8. Moazed, D., and Noller, H. F. (1989) Cell 57, 585-597
9. Mitchen, P., Stade, K., Osswald, M., and Brimacombe, R. (1993) Nucleic Acids Res. 21, 887-896
10. Hansen, J. L., Moore, P. B., and Steitz, T. A. (2003) J. Mol. Biol. 330, 1061-1075
11. Poulsen, S. M., Kofoed, C., and Vester, B. (2000) J. Mol. Biol. 304, 471-481
12. Hansen, J. L., Ippolito, J. A., Ban, N., Nissen, P., Moore, P. B., and Steitz, T. A. (2002) Mol. Cell 10, 117-128
13. Spahn, C. M. T., and Prescott, C. D. (1996) J. Mol. Med. 74, 423-439
14. Menninger, J. R., and Otto, D. P. (1982) Antimicrob. Agents Chemother. 21, 811-818
15. Champney, W. S. (2001) Curr. Drug Targets Infect. Disord. 1, 19-36
16. Dinos, G., Synetos, D., and Coutsogeorgopoulos, C. (1993) Biochemistry 32, 10638-10647
17. Kirillov, S. V., Porse, B. T., and Garrett, R. A. (1999) RNA (N. Y.) 5, 1003-1013
18. Vogel, Z., Vogel, T., Zamir, A., and Elson, D. (1971) J. Mol. Biol. 60, 339-346
19. Teraoka, H., and Tanaka, K. (1973) Eur. J. Biochem. 33, 578-583
20. Clark, E., Swank, R. A., Morgan, J. E., Basu, H., and Matthews, H. R. (1991) Biochemistry 30, 4009-4020
21. Drainas, D., and Kalpaxis, D. L. (1994) Biochim. Biophys. Acta 1208, 55-64
22. Amarantos, I., Zarkadis, I. K., and Kalpaxis, D. L. (2002) Nucleic Acids Res. 30, 2832-2843
23. Synetos, D., and Coutsogeorgopoulos, C. (1987) Biochim. Biophys. Acta 923, 275-285
24. Segel, I. H. (1993) Enzyme Kinetics, pp. 39-43 and 170-202, John Wiley & Sons Inc., New York, NY
25. Kalpaxis, D. L., and Drainas, D. (1993) Arch. Biochem. Biophys. 300, 629-634
26. Xaplanteri, M. A., Andreou, A., Dinos, G. P., and Kalpaxis, D. L. (2003) Nucleic Acids Res. 31, 5074-5083
27. Morrison, J. F., and Walsh, C. T. (1988) Adv. Enzymol. Relat. Areas Mol. Biol. 61, 201-301
28. Erion, M. D., and Walsh, C. T. (1987) Biochemistry 26, 3417-3425
29. Amarantos, I., and Kalpaxis, D. L. (2000) Nucleic Acids Res. 28, 3733-3742
30. Amarantos, I., Xaplanteri, M. A., Choli-Papadopoulou, T., and Kalpaxis, D. L. (2001) Biochemistry 40, 7641-7650
31. Jelenc, P. C., and Kurland, C. G. (1979) Proc. Natl. Acad. Sci. U. S. A. 76, 3174-3178
32. Bartetzko, A., and Nierhaus, K. H. (1988) Methods Enzymol. 164, 650-658
33. Cohen, S. S. (1998) A Guide to Polyamines, pp. 495-506, Oxford University Press, New York, NY
34. Agrawal, R. K., Penczek, P., Grassucci, R. A., Burkhardt, N., Nierhaus, K. H., and Frank, J. (1999) J. Biol. Chem. 274, 8723-8729
35. Schlünzen, F., Zarivach, R., Harms, J., Basham, A., Tocilj, A., Albrecht, R., Yonath, A., and Franceschi, F. (2001) Nature 413, 814-821
36. Samaha, R. R., Green, R., and Noller, H. F. (1995) Nature 377, 309-314
37. Nissen, P., Hansen, J., Ban, N., Moore, P., and Steitz, T. (2000) Science 289, 920-930
38. Triman, K. L. (1999) Adv. Genet. 41, 157-195
39. Polacek, N., and Barta, A. (1998) RNA (N. Y.) 4, 1282-1294
40. Vester, B., and Douthwaite, S. (2001) Antimicrob. Agents Chemother. 45, 1-12
41. Depardieu, F., and Courvalin, P. (2001) Antimicrob. Agents Chemother. 45, 319-323