Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy

Journal of Biological Chemistry

Volumn 274, Issue 13, 1999, Pages 8723-8729

  Agrawal, Rajendra K ^a   Penczek, Pawel ^a   Grassucci, Robert A ^b   Burkhardt, Nils ^c   Nierhaus, Knud H ^c   Frankt, Joachim ^a,b  

^a STATE UNIVERSITY OF NEW YORK   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BUFFER; POLYAMINE; TRANSFER RNA;

AMINOACYLATION; ANTICODON; ARTICLE; BINDING AFFINITY; BINDING SITE; CONTROLLED STUDY; CRYOELECTRON MICROSCOPY; DEACETYLATION; NONHUMAN; PRIORITY JOURNAL; RIBOSOME SUBUNIT; RNA ANALYSIS; RNA BINDING;

ACYLATION; BUFFERS; CRYOELECTRON MICROSCOPY; ESCHERICHIA COLI; MODELS, MOLECULAR; POLY U; RIBOSOMES; RNA, MESSENGER; RNA, TRANSFER; RNA, TRANSFER, MET; X-RAY DIFFRACTION;

ESCHERICHIA COLI;

EID: 0033605751     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.274.13.8723     Document Type: Article

References (33)

1. Frank, J., and Agrawal, R. K. (1998) Biophys. J. 74, 589-594
2. Frank, J., Zhu, J., Penczek, P., Li, Y., Srivastava, S., Verschoor, A., Radermacher, M., Grassucci, R., Lata, R. K., and Agrawal, R. K. (1995) Nature 376, 441-444
3. Stark, H., Mueller, F., Orlova, E. V., Schatz, M., Dube, P., Erdemir, T., Zemlin, F., Brimacombe, R., and van Heel, M. (1995) Structure 3, 815-821
4. Agrawal, R. K., Penczek, P., Grassucci, R. A., Li, Y., Leith, A., Nierhaus, K. H., and Frank, J. (1996) Science 271, 1000-1002
5. Stark, H., Orlova, E. V., Rinke-Appel, J., Jünke, N., Mueller, F., Rodnina, M., Wintermeyer, W., Brimacombe, R., and van Heel, M. (1997) Cell 88, 19-28
6. Stark, H., Rodnina, M., Rinke-Appel, J., Brimacombe, R., Wintermeyer, W., and van Heel, M. (1997) Nature 389, 403-406
7. Agrawal, R. K., Penczek, P., Grassucci, R. A., and Frank, J. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 6134-6138
8. Malhotra, A., Penczek, P., Agrawal, R. K., Gabashvili, I., Grassucci, R. A., Burkhardt, N., Jünemann, R., Nierhaus, K. H., and Frank, J. (1998) J. Mol. Biol. 280, 103-116
9. Jelenc P. C., and Kurland, C. G. (1979) Proc. Natl. Acad. Sci. U. S. A. 76, 3174-3178
10. Bilgin, N., Claesens, F., Pahverk, H., and Ehrenberg, M. (1992) J. Mol. Biol. 224, 1011-1027
11. Bartetzko, A., and Nierhaus, K. H. (1988) Methods Enzymol. 164, 650-658
12. Kutay, U. R., Spahn, C. M. T., and Nierhaus, K. H. (1990) Biochim. Biophys. Acta 1050, 193-196
13. Nierhaus, K. H., Jünemann, R., and Spahn, C. M. T. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 10499-10500
14. Agrawal, R. K., and Burma, D. P. (1996) J. Biol. Chem. 271, 21285-21291
15. Bommer, U., Burkhardt, N., Jünemann, R., Spahn, C. M. T., Triana-Alonso, F. J., and Nierhaus, K. H. (1997) in Subcellular Fractionation - A Practical Approach (Graham, J., and Rickwood, D., eds), pp. 271-301, IRL Press, Washington, DC
16. Wagenknecht, T., Grassucci, R., and Frank, J. (1988) J. Mol. Biol. 199, 137-145
17. Dubochet, J., Adrian, M., Chang, J. J., Homo, J. C., Lepault, J., McDonnall, A. W., and Schultz, P. (1988) Q. Rev. Biophys. 21, 129-228
18. Penczek, P., Grassucci, R. A., and Frank, J. (1994) Ultramicroscopy 53, 251-270
19. Zhu, J., Penczek, P. A., Schröder, R., and Frank, J. (1997) J. Struct. Biol. 118, 197-219
20. Triana-Alonso, F. J., Dabrowski, M., Wadzack, J., and Nierhaus, K. H. (1995) J. Biol. Chem. 270, 6298-6307
21. Agrawal, R. K., Lata, R. K., and Frank, J. (1998) Int. J. Biochem. Cell Biol. 31, 243-254
22. Gnirke, A., Geigenmüller, U., Rheinberger, H.-J., and Nierhaus, K. H. (1989) J. Biol. Chem. 264, 7291-7301
23. Zimmermann, R. A., Thomas, C. L., and Wower, J. (1990) in The Ribosomes: Structure, Function, and Evolution (Hill, W. E., Dahlberg, A., Garrett, R. A., Moore, P. B., Schlessinger, D., and Warner, R., eds), pp. 331-347, American Society for Microbiology, Washington, DC
24. Rheinberger, H.-J., Sternbach, H., and Nierhaus, K. H. (1981) Proc. Natl. Acad. Sci. U. S. A. 76, 5310-5314
25. Grajevskaja, R. A., Ivanov, Y. V., and Saminsky, E. M. (1982) Eur. J. Biochem. 128, 47-52
26. Westhof, E., Dumas, P., and Moras, D. (1988) Acta Crystallogr. Sect. A 44, 112-123
27. Basavappa, R., and Sigler, P. B. (1991) EMBO J. 10, 3105-3111
28. Hardesty, B., Odom, O. W., and Deng, H.-Y. (1986) in Structure Function and Genetics of Ribosomes (Hardesty, B., and Kramer, G., eds), pp. 495-508, Springer-Verlag, New York
29. Moazed, D., and Noller, H. F. (1989) Nature 342, 142-148
30. Lata, K. R., Agrawal, R. K., Penczek, P., Grassucci, R., Zhu, J., and Frank, J. (1996) J. Mol. Biol. 262, 43-52
31. Mueller, F., Stark, H., van Heel, M., Rinke-Appel, J., and Brimacombe, R. (1997) J. Mol. Biol. 271, 566-587
32. Podkowinski, J., and Gornicki, P. (1991) Nucleic Acids Res. 19, 801-808
33. Lill, R., and Wintermeyer, W. (1987) J. Mol. Biol. 196, 137-148