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Volumn 320, Issue 1, 2004, Pages 197-204

In silico characterization of the INO80 subfamily of SWI2/SNF2 chromatin remodeling proteins

Author keywords

Chromatin remodeling; DNA dependent ATPase; INO80; SNF2 domain

Indexed keywords

DNA; DNA BINDING PROTEIN; PROTEIN SUBUNIT; SNF2 PROTEIN; UNCLASSIFIED DRUG;

EID: 2942635055     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2004.05.147     Document Type: Article
Times cited : (24)

References (34)
  • 2
    • 0035997356 scopus 로고    scopus 로고
    • ATP-dependent nucleosome remodeling
    • Becker P.B., Horz W. ATP-dependent nucleosome remodeling. Annu. Rev. Biochem. 71:2002;247-273
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 247-273
    • Becker, P.B.1    Horz, W.2
  • 3
    • 0034610814 scopus 로고    scopus 로고
    • The language of covalent histone modifications
    • Strahl D., Allis C.D. The language of covalent histone modifications. Nature. 403:2000;41-45
    • (2000) Nature , vol.403 , pp. 41-45
    • Strahl, D.1    Allis, C.D.2
  • 4
    • 0033848849 scopus 로고    scopus 로고
    • Histone acetylation and an epigenetic code
    • Turner B.M. Histone acetylation and an epigenetic code. Bioessays. 22:2000;836-845
    • (2000) Bioessays , vol.22 , pp. 836-845
    • Turner, B.M.1
  • 5
    • 0035313855 scopus 로고    scopus 로고
    • Mechanisms for ATP-dependent chromatin remodelling
    • Flaus A., Owen-Hughes T. Mechanisms for ATP-dependent chromatin remodelling. Curr. Opin. Genet. Dev. 11:2001;148-154
    • (2001) Curr. Opin. Genet. Dev. , vol.11 , pp. 148-154
    • Flaus, A.1    Owen-Hughes, T.2
  • 6
    • 0029157378 scopus 로고
    • Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
    • Eisen J.A., Sweder K.S., Hanawalt P.C. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23:1995;2715-2723
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2715-2723
    • Eisen, J.A.1    Sweder, K.S.2    Hanawalt, P.C.3
  • 7
    • 0031941159 scopus 로고    scopus 로고
    • Chromatin remodeling machines: Similar motors, ulterior motives
    • Cairns B.R. Chromatin remodeling machines: similar motors, ulterior motives. Trends Biochem. Sci. 23:1998;20-25
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 20-25
    • Cairns, B.R.1
  • 8
    • 0027267908 scopus 로고
    • A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication
    • Koonin E.V. A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res. 21:1993;2541-2547
    • (1993) Nucleic Acids Res. , vol.21 , pp. 2541-2547
    • Koonin, E.V.1
  • 9
    • 0031911760 scopus 로고    scopus 로고
    • Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases
    • Korolev S., Yao N., Lohman T.M., Weber P.C., Waksman G. Comparisons between the structures of HCV and Rep helicases reveal structural similarities between SF1 and SF2 super-families of helicases. Protein Sci. 7:1998;605-610
    • (1998) Protein Sci. , vol.7 , pp. 605-610
    • Korolev, S.1    Yao, N.2    Lohman, T.M.3    Weber, P.C.4    Waksman, G.5
  • 10
    • 0344198456 scopus 로고    scopus 로고
    • Chromatin remodeling by ATP-dependent molecular machines
    • Lusser A., Kadonaga J.T. Chromatin remodeling by ATP-dependent molecular machines. Bioessays. 25:2003;1192-1200
    • (2003) Bioessays , vol.25 , pp. 1192-1200
    • Lusser, A.1    Kadonaga, J.T.2
  • 11
    • 0034717183 scopus 로고    scopus 로고
    • Structure and function of a human TAFII250 double bromodomain module
    • Jacobson R.H., Ladurner A.G., King D.S., Tjian R. Structure and function of a human TAFII250 double bromodomain module. Science. 288:2000;1422-1425
    • (2000) Science , vol.288 , pp. 1422-1425
    • Jacobson, R.H.1    Ladurner, A.G.2    King, D.S.3    Tjian, R.4
  • 12
    • 85047671736 scopus 로고    scopus 로고
    • The SANT domain: A putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB
    • Aasland R., Stewart A.F., Gibson T. The SANT domain: a putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB. Trends Biochem. Sci. 21:1996;87-88
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 87-88
    • Aasland, R.1    Stewart, A.F.2    Gibson, T.3
  • 13
    • 0034699391 scopus 로고    scopus 로고
    • Chromodomains are protein-RNA interaction modules
    • Akhtar, Zink D., Becker P.B. Chromodomains are protein-RNA interaction modules. Nature. 407:2000;405-409
    • (2000) Nature , vol.407 , pp. 405-409
    • Akhtar1    Zink, D.2    Becker, P.B.3
  • 14
    • 0032171040 scopus 로고    scopus 로고
    • Chromatin remodeling: A marriage between two families?
    • Pollard K.J., Peterson C.L. Chromatin remodeling: a marriage between two families? Bioessays. 20:1998;771-780
    • (1998) Bioessays , vol.20 , pp. 771-780
    • Pollard, K.J.1    Peterson, C.L.2
  • 15
    • 0034601464 scopus 로고    scopus 로고
    • A chromatin remodelling complex involved in transcription and DNA processing
    • Shen X., Mizuguchi G., Hamiche A., Wu C. A chromatin remodelling complex involved in transcription and DNA processing. Nature. 406:2000;541-544
    • (2000) Nature , vol.406 , pp. 541-544
    • Shen, X.1    Mizuguchi, G.2    Hamiche, A.3    Wu, C.4
  • 17
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 18
    • 0025334980 scopus 로고
    • Improvements in protein secondary structure prediction by an enhanced neural network
    • Kneller D.G., Cohen F.E., Langridge R. Improvements in protein secondary structure prediction by an enhanced neural network. J. Mol. Biol. 214:1990;171-182
    • (1990) J. Mol. Biol. , vol.214 , pp. 171-182
    • Kneller, D.G.1    Cohen, F.E.2    Langridge, R.3
  • 21
    • 0033990063 scopus 로고    scopus 로고
    • GCG: The Wisconsin package of sequence analysis programs
    • Womble D.D. GCG: the Wisconsin package of sequence analysis programs. Methods Mol. Biol. 132:2000;3-22
    • (2000) Methods Mol. Biol. , vol.132 , pp. 3-22
    • Womble, D.D.1
  • 22
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:1996;357-358
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 23
    • 0033010289 scopus 로고    scopus 로고
    • The product of the SNF2/SWI2 paralogue INO80 of Saccharomyces cerevisiae required for efficient expression of various yeast structural genes is part of a high-molecular-weight protein complex
    • Ebbert R., Birkmann A., Schuller H.J. The product of the SNF2/SWI2 paralogue INO80 of Saccharomyces cerevisiae required for efficient expression of various yeast structural genes is part of a high-molecular-weight protein complex. Mol. Microbiol. 32:1999;741-751
    • (1999) Mol. Microbiol. , vol.32 , pp. 741-751
    • Ebbert, R.1    Birkmann, A.2    Schuller, H.J.3
  • 24
    • 0025188837 scopus 로고
    • Crystal structure of an engrailed homeodomain-DNA complex at 2.8 Å resolution: A framework for understanding homeodomain-DNA interactions
    • Kissinger C.R., Liu B.S., Martin-Blanco E., Kornberg T.B., Pabo C.O. Crystal structure of an engrailed homeodomain-DNA complex at 2.8. Å resolution: a framework for understanding homeodomain-DNA interactions Cell. 63:1990;579-590
    • (1990) Cell , vol.63 , pp. 579-590
    • Kissinger, C.R.1    Liu, B.S.2    Martin-Blanco, E.3    Kornberg, T.B.4    Pabo, C.O.5
  • 25
    • 0026092475 scopus 로고
    • Protein motifs that recognize structural features of DNA
    • Churchill M.E., Travers A.A. Protein motifs that recognize structural features of DNA. Trends Biochem. Sci. 16:1991;92-97
    • (1991) Trends Biochem. Sci. , vol.16 , pp. 92-97
    • Churchill, M.E.1    Travers, A.A.2
  • 26
    • 0024319793 scopus 로고
    • Isolation and sequencing of cDNA clones encoding Drosophila chromosomal protein D1. A repeating motif in proteins which recognize at DNA
    • Ashley C.T., Pendleton C.G., Jennings W.W., Saxena A., Glover C.V. Isolation and sequencing of cDNA clones encoding Drosophila chromosomal protein D1. A repeating motif in proteins which recognize at DNA. J. Biol. Chem. 264:1989;8394-8401
    • (1989) J. Biol. Chem. , vol.264 , pp. 8394-8401
    • Ashley, C.T.1    Pendleton, C.G.2    Jennings, W.W.3    Saxena, A.4    Glover, C.V.5
  • 27
    • 0028239595 scopus 로고
    • Two human homologues of Saccharomyces cerevisiae SWI2/SNF2 and Drosophila brahma are transcriptional coactivators cooperating with the estrogen receptor and the retinoic acid receptor
    • Chiba H., Muramatsu M., Nomoto A., Kato H. Two human homologues of Saccharomyces cerevisiae SWI2/SNF2 and Drosophila brahma are transcriptional coactivators cooperating with the estrogen receptor and the retinoic acid receptor. Nucleic Acids Res. 22:1994;1815-1820
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1815-1820
    • Chiba, H.1    Muramatsu, M.2    Nomoto, A.3    Kato, H.4
  • 28
    • 0028948315 scopus 로고
    • DNA-binding and chromatin localization properties of CHD1
    • Stokes D.G., Perry R.P. DNA-binding and chromatin localization properties of CHD1. Mol. Cell. Biol. 15:1995;2745-2753
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2745-2753
    • Stokes, D.G.1    Perry, R.P.2
  • 29
    • 0347948465 scopus 로고    scopus 로고
    • The SNF2 domain protein family in higher vertebrates displays dynamic expression patterns in Xenopus laevis embryos
    • Linder B., Cabot R.A., Schwickert T., Rupp R.A. The SNF2 domain protein family in higher vertebrates displays dynamic expression patterns in Xenopus laevis embryos. Gene. 326:2004;59-66
    • (2004) Gene , vol.326 , pp. 59-66
    • Linder, B.1    Cabot, R.A.2    Schwickert, T.3    Rupp, R.A.4
  • 30
    • 0348184963 scopus 로고    scopus 로고
    • ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
    • Mizuguchi G., Shen X., Landry J., Wu W.H., Sen S., Wu C. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science. 303:2004;343-348
    • (2004) Science , vol.303 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.H.4    Sen, S.5    Wu, C.6
  • 31
    • 0042671282 scopus 로고    scopus 로고
    • Involvement of actin-related proteins in ATP-dependent chromatin remodeling
    • Shen X., Ranallo R., Choi E., Wu C. Involvement of actin-related proteins in ATP-dependent chromatin remodeling. Mol. Cell. 12:2003;147-155
    • (2003) Mol. Cell. , vol.12 , pp. 147-155
    • Shen, X.1    Ranallo, R.2    Choi, E.3    Wu, C.4
  • 32
    • 0037380161 scopus 로고    scopus 로고
    • Recent advances in understanding chromatin remodeling by Swi/Snf complexes
    • Martens J.A., Winston F. Recent advances in understanding chromatin remodeling by Swi/Snf complexes. Curr. Opin. Genet. Dev. 13:2003;136-142
    • (2003) Curr. Opin. Genet. Dev. , vol.13 , pp. 136-142
    • Martens, J.A.1    Winston, F.2
  • 34
    • 0037414839 scopus 로고    scopus 로고
    • Modulation of ATP-dependent chromatin-remodeling complexes by inositol polyphosphates
    • Shen X., Xiao H., Ranallo R., Wu W.H., Wu C. Modulation of ATP-dependent chromatin-remodeling complexes by inositol polyphosphates. Science. 299:2003;112-114
    • (2003) Science , vol.299 , pp. 112-114
    • Shen, X.1    Xiao, H.2    Ranallo, R.3    Wu, W.H.4    Wu, C.5


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