-
1
-
-
0030038464
-
Methods used in the structure determination of bovine mitochondrial F-1 ATPase
-
Abrahams J.P., Leslie A.G.W. Methods used in the structure determination of bovine mitochondrial F-1 ATPase. Acta Crystallogr. D. 52:1996;30-42
-
(1996)
Acta Crystallogr. D
, vol.52
, pp. 30-42
-
-
Abrahams, J.P.1
Leslie, A.G.W.2
-
2
-
-
0030986177
-
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement
-
Adams P.D., Pannu N.S., Read R.J., Brunger A.T. Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement. Proc. Natl. Acad. Sci. USA. 94:1997;5018-5023
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 5018-5023
-
-
Adams, P.D.1
Pannu, N.S.2
Read, R.J.3
Brunger, A.T.4
-
3
-
-
0035563698
-
The methanol-induced conformational transitions of beta-lactoglobulin, cytochrome c, and ubiquitin at low pH: A study by electrospray ionization mass spectrometry
-
Babu K.R., Moradian A., Douglas D.J. The methanol-induced conformational transitions of beta-lactoglobulin, cytochrome c, and ubiquitin at low pH. a study by electrospray ionization mass spectrometry J. Am. Soc. Mass Spectrom. 12:2001;317-328
-
(2001)
J. Am. Soc. Mass Spectrom.
, vol.12
, pp. 317-328
-
-
Babu, K.R.1
Moradian, A.2
Douglas, D.J.3
-
5
-
-
0032444658
-
Trifluoroethanol and colleagues: Cosolvents come of age. Recent studies with peptides and proteins
-
Buck M. Trifluoroethanol and colleagues. cosolvents come of age. Recent studies with peptides and proteins Q. Rev. Biophys. 31:1998;297-355
-
(1998)
Q. Rev. Biophys.
, vol.31
, pp. 297-355
-
-
Buck, M.1
-
6
-
-
0024961720
-
Trp repressor arms contribute binding energy without occupying unique locations on DNA
-
Carey J. trp repressor arms contribute binding energy without occupying unique locations on DNA. J. Biol. Chem. 264:1989;1941-1945
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 1941-1945
-
-
Carey, J.1
-
7
-
-
0027508053
-
Cocrystals of Escherichia coli trp repressor bound to an alternative operator DNA sequence
-
Carey J., Combatti N., Lewis D.E., Lawson C.L. Cocrystals of Escherichia coli trp repressor bound to an alternative operator DNA sequence. J. Mol. Biol. 234:1993;496-498
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 496-498
-
-
Carey, J.1
Combatti, N.2
Lewis, D.E.3
Lawson, C.L.4
-
8
-
-
0345504772
-
Oligomerization of the EK18 mutant of the trp repressor of Escherichia coli as observed by NMR spectroscopy
-
Chae Y.K., Abildgaard F., Royer C.A., Markley J.L. Oligomerization of the EK18 mutant of the trp repressor of Escherichia coli as observed by NMR spectroscopy. Arch. Biochem. Biophys. 371:1999;35-40
-
(1999)
Arch. Biochem. Biophys.
, vol.371
, pp. 35-40
-
-
Chae, Y.K.1
Abildgaard, F.2
Royer, C.A.3
Markley, J.L.4
-
9
-
-
0032705748
-
Locating interaction sites on proteins: The crystal structure of thermolysin soaked in 2% to 100% isopropanol
-
English A.C., Done S.H., Caves L.S., Groom C.R., Hubbard R.E. Locating interaction sites on proteins. the crystal structure of thermolysin soaked in 2% to 100% isopropanol Proteins. 37:1999;628-640
-
(1999)
Proteins
, vol.37
, pp. 628-640
-
-
English, A.C.1
Done, S.H.2
Caves, L.S.3
Groom, C.R.4
Hubbard, R.E.5
-
10
-
-
0037119995
-
The structure of bacterial DnaA: Implications for general mechanisms underlying DNA replication initiation
-
Erzberger J.P., Pirruccello M.M., Berger J.M. The structure of bacterial DnaA. implications for general mechanisms underlying DNA replication initiation EMBO J. 21:2002;4763-4773
-
(2002)
EMBO J.
, vol.21
, pp. 4763-4773
-
-
Erzberger, J.P.1
Pirruccello, M.M.2
Berger, J.M.3
-
11
-
-
0026569112
-
Role of protein-protein interactions in the regulation of transcription by trp repressor investigated by fluorescence spectroscopy
-
Fernando T., Royer C. Role of protein-protein interactions in the regulation of transcription by trp repressor investigated by fluorescence spectroscopy. Biochemistry. 31:1992;3429-3441
-
(1992)
Biochemistry
, vol.31
, pp. 3429-3441
-
-
Fernando, T.1
Royer, C.2
-
13
-
-
0024238064
-
Formation of heterodimers between wild type and mutant trp aporepressor polypeptides of Escherichia coli
-
Graddis T.J., Klig L.S., Yanofsky C., Oxender D.L. Formation of heterodimers between wild type and mutant trp aporepressor polypeptides of Escherichia coli. Proteins. 4:1988;173-181
-
(1988)
Proteins
, vol.4
, pp. 173-181
-
-
Graddis, T.J.1
Klig, L.S.2
Yanofsky, C.3
Oxender, D.L.4
-
14
-
-
0029945313
-
Flexibility of DNA binding domain of trp repressor required for recognition of different operator sequences
-
Gryk M.R., Jardetzky O., Klig L.S., Yanofsky C. Flexibility of DNA binding domain of trp repressor required for recognition of different operator sequences. Protein Sci. 5:1996;1195-1197
-
(1996)
Protein Sci.
, vol.5
, pp. 1195-1197
-
-
Gryk, M.R.1
Jardetzky, O.2
Klig, L.S.3
Yanofsky, C.4
-
15
-
-
0036890333
-
Protein reconstitution and 3D domain swapping
-
Hakansson M., Linse S. Protein reconstitution and 3D domain swapping. Curr. Protein Pept. Sci. 3:2002;629-642
-
(2002)
Curr. Protein Pept. Sci.
, vol.3
, pp. 629-642
-
-
Hakansson, M.1
Linse, S.2
-
16
-
-
0027168732
-
Analysis of heterodimer formation by the Escherichia coli trp repressor
-
Hurlburt B.K., Yanofsky C. Analysis of heterodimer formation by the Escherichia coli trp repressor. J. Biol. Chem. 268:1993;14794-14798
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 14794-14798
-
-
Hurlburt, B.K.1
Yanofsky, C.2
-
17
-
-
0026206788
-
Sparse matrix sampling: A screening method for crystallization of proteins
-
Jancarik K., Kim S.-H. Sparse matrix sampling. a screening method for crystallization of proteins J. Appl. Crystallogr. 24:1991;409-411
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 409-411
-
-
Jancarik, K.1
Kim, S.-H.2
-
18
-
-
0035757051
-
3D domain swapping, protein oligomerization, and amyloid formation
-
Jaskolski M. 3D domain swapping, protein oligomerization, and amyloid formation. Acta Biochim. Pol. 48:2001;807-827
-
(2001)
Acta Biochim. Pol.
, vol.48
, pp. 807-827
-
-
Jaskolski, M.1
-
19
-
-
0027317958
-
Thermodynamics of ligand binding to trp repressor
-
Jin L., Yang J., Carey J. Thermodynamics of ligand binding to trp repressor. Biochemistry. 32:1993;7302-7309
-
(1993)
Biochemistry
, vol.32
, pp. 7302-7309
-
-
Jin, L.1
Yang, J.2
Carey, J.3
-
20
-
-
0033534367
-
Long-range effects on dynamics in a temperature-sensitive mutant of trp repressor
-
Jin L., Fukayama J.W., Pelczer I., Carey J. Long-range effects on dynamics in a temperature-sensitive mutant of trp repressor. J. Mol. Biol. 285:1999;361-378
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 361-378
-
-
Jin, L.1
Fukayama, J.W.2
Pelczer, I.3
Carey, J.4
-
21
-
-
0345677967
-
Purification and characterization of trp aporepressor
-
a
-
Joachimiak A., Kelley R.L., Gunsalus R.P., Yanofsky C., Sigler P.B. Purification and characterization of trp aporepressor. Proc. Natl. Acad. Sci. USA. 80:1983;668-672. a
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 668-672
-
-
Joachimiak, A.1
Kelley, R.L.2
Gunsalus, R.P.3
Yanofsky, C.4
Sigler, P.B.5
-
22
-
-
0021112696
-
Functional inferences from crystals of Escherichia coli trp repressor
-
b
-
Joachimiak A., Schevitz R.W., Kelley R.L., Yanofsky C., Sigler P.B. Functional inferences from crystals of Escherichia coli trp repressor. J. Biol. Chem. 258:1983;12641-12643. b
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 12641-12643
-
-
Joachimiak, A.1
Schevitz, R.W.2
Kelley, R.L.3
Yanofsky, C.4
Sigler, P.B.5
-
24
-
-
0346496439
-
Structural consequences of two methyl additions in the E. coli trp repressor L-tryptophan binding pocket
-
R.H. Sarma, & M.H. Sarma. Schenectady, NY: Academic Press
-
Lawson C.L. Structural consequences of two methyl additions in the E. coli trp repressor L-tryptophan binding pocket. Sarma R.H., Sarma M.H. In Biological Structure and Dynamics. 1996;83-90 Academic Press, Schenectady, NY
-
(1996)
In Biological Structure and Dynamics
, pp. 83-90
-
-
Lawson, C.L.1
-
25
-
-
0027372621
-
Tandem binding in crystals of a trp repressor/operator half-site complex
-
Lawson C.L., Carey J. Tandem binding in crystals of a trp repressor/operator half-site complex. Nature. 366:1993;178-182
-
(1993)
Nature
, vol.366
, pp. 178-182
-
-
Lawson, C.L.1
Carey, J.2
-
26
-
-
0023900891
-
Flexibility of the DNA-binding domains of trp repressor
-
Lawson C.L., Zhang R.G., Schevitz R.W., Otwinowski Z., Joachimiak A., Sigler P.B. Flexibility of the DNA-binding domains of trp repressor. Proteins. 3:1988;18-31
-
(1988)
Proteins
, vol.3
, pp. 18-31
-
-
Lawson, C.L.1
Zhang, R.G.2
Schevitz, R.W.3
Otwinowski, Z.4
Joachimiak, A.5
Sigler, P.B.6
-
27
-
-
0036108484
-
3D domain swapping: As domains continue to swap
-
Liu Y., Eisenberg D. 3D domain swapping. as domains continue to swap Protein Sci. 11:2002;1285-1299
-
(2002)
Protein Sci.
, vol.11
, pp. 1285-1299
-
-
Liu, Y.1
Eisenberg, D.2
-
28
-
-
0036145653
-
Structures of the two 3D domain-swapped RNase a trimers
-
Liu Y., Gotte G., Libonati M., Eisenberg D. Structures of the two 3D domain-swapped RNase A trimers. Protein Sci. 11:2002;371-380
-
(2002)
Protein Sci.
, vol.11
, pp. 371-380
-
-
Liu, Y.1
Gotte, G.2
Libonati, M.3
Eisenberg, D.4
-
29
-
-
0036789017
-
Serpinopathies and the conformational dementias
-
Lomas D.A., Carrell R.W. Serpinopathies and the conformational dementias. Nat. Rev. Genet. 3:2002;759-768
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 759-768
-
-
Lomas, D.A.1
Carrell, R.W.2
-
30
-
-
0031596571
-
Mutational analysis of the NH2-terminal arms of the trp repressor indicates a multifunctional domain
-
Mackintosh S.G., McDermott P.F., Hurlburt B.K. Mutational analysis of the NH2-terminal arms of the trp repressor indicates a multifunctional domain. Mol. Microbiol. 27:1998;1119-1127
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 1119-1127
-
-
MacKintosh, S.G.1
McDermott, P.F.2
Hurlburt, B.K.3
-
31
-
-
0028266201
-
Electrostatic forces contribute to interactions between trp repressor dimers
-
Martin K.S., Royer C.A., Howard K.P., Carey J., Liu Y.C., Matthews K., Heyduk E., Lee J.C. Electrostatic forces contribute to interactions between trp repressor dimers. Biophys. J. 66:1994;1167-1172
-
(1994)
Biophys. J.
, vol.66
, pp. 1167-1172
-
-
Martin, K.S.1
Royer, C.A.2
Howard, K.P.3
Carey, J.4
Liu, Y.C.5
Matthews, K.6
Heyduk, E.7
Lee, J.C.8
-
33
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza J. AMoRe. an automated package for molecular replacement Acta Crystallogr. A. 50:1994;157-163
-
(1994)
Acta Crystallogr. a
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
34
-
-
0036468392
-
Protein folding and three-dimensional domain swapping: A strained relationship?
-
Newcomer M.E. Protein folding and three-dimensional domain swapping. a strained relationship? Curr. Opin. Struct. Biol. 12:2002;48-53
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 48-53
-
-
Newcomer, M.E.1
-
35
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
R.M. Sweet, ed. (San Diego, Academic Press)
-
Otwinowski, Z., and Minor, W. (1997). Processing of X-ray diffraction data collected in oscillation mode. In Methods in Enzymology, Volume 276, R.M. Sweet, ed. (San Diego, Academic Press), pp. 307-326.
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
36
-
-
0024294634
-
Crystal structure of trp repressor/operator complex at atomic resolution
-
Otwinowski Z., Schevitz R.W., Zhang R.G., Lawson C.L., Joachimiak A., Marmorstein R.Q., Luisi B.F., Sigler P.B. Crystal structure of trp repressor/operator complex at atomic resolution. Nature. 335:1988;321-329
-
(1988)
Nature
, vol.335
, pp. 321-329
-
-
Otwinowski, Z.1
Schevitz, R.W.2
Zhang, R.G.3
Lawson, C.L.4
Joachimiak, A.5
Marmorstein, R.Q.6
Luisi, B.F.7
Sigler, P.B.8
-
37
-
-
0032716810
-
Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7
-
Sawaya M.R., Guo S., Tabor S., Richardson C.C., Ellenberger T. Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7. Cell. 99:1999;167-177
-
(1999)
Cell
, vol.99
, pp. 167-177
-
-
Sawaya, M.R.1
Guo, S.2
Tabor, S.3
Richardson, C.C.4
Ellenberger, T.5
-
38
-
-
0022360261
-
The three-dimensional structure of trp repressor
-
Schevitz R.W., Otwinowski Z., Joachimiak A., Lawson C.L., Sigler P.B. The three-dimensional structure of trp repressor. Nature. 317:1985;782-786
-
(1985)
Nature
, vol.317
, pp. 782-786
-
-
Schevitz, R.W.1
Otwinowski, Z.2
Joachimiak, A.3
Lawson, C.L.4
Sigler, P.B.5
-
39
-
-
0030770294
-
Oligomer formation by 3D domain swapping: A model for protein assembly and misassembly
-
Schlunegger M.P., Bennett M.J., Eisenberg D. Oligomer formation by 3D domain swapping. a model for protein assembly and misassembly Adv. Protein Chem. 50:1997;61-122
-
(1997)
Adv. Protein Chem.
, vol.50
, pp. 61-122
-
-
Schlunegger, M.P.1
Bennett, M.J.2
Eisenberg, D.3
-
40
-
-
0033081498
-
The active conformation of plasminogen activator inhibitor 1, a target for drugs to control fibrinolysis and cell adhesion
-
Sharp A.M., Stein P.E., Pannu N.S., Carrell R.W., Berkenpas M.B., Ginsburg D., Lawrence D.A., Read R.J. The active conformation of plasminogen activator inhibitor 1, a target for drugs to control fibrinolysis and cell adhesion. Struct. Fold. Des. 7:1999;111-118
-
(1999)
Struct. Fold. Des.
, vol.7
, pp. 111-118
-
-
Sharp, A.M.1
Stein, P.E.2
Pannu, N.S.3
Carrell, R.W.4
Berkenpas, M.B.5
Ginsburg, D.6
Lawrence, D.A.7
Read, R.J.8
-
41
-
-
0026500416
-
The structure of the E. coli recA protein monomer and polymer
-
Story R.M., Weber I.T., Steitz T.A. The structure of the E. coli recA protein monomer and polymer. Nature. 355:1992;318-325
-
(1992)
Nature
, vol.355
, pp. 318-325
-
-
Story, R.M.1
Weber, I.T.2
Steitz, T.A.3
-
42
-
-
0035971165
-
Crystal structure of the "cab"-type beta class carbonic anhydrase from the archaeon Methanobacterium thermoautotrophicum
-
Strop P., Smith K.S., Iverson T.M., Ferry J.G., Rees D.C. Crystal structure of the "cab"-type beta class carbonic anhydrase from the archaeon Methanobacterium thermoautotrophicum. J. Biol. Chem. 276:2001;10299-10305
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 10299-10305
-
-
Strop, P.1
Smith, K.S.2
Iverson, T.M.3
Ferry, J.G.4
Rees, D.C.5
-
43
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
Svergun D.I. Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J. Appl. Crystallogr. 25:1992;495-503
-
(1992)
J. Appl. Crystallogr.
, vol.25
, pp. 495-503
-
-
Svergun, D.I.1
-
44
-
-
0032478214
-
Protein hydration in solution: Experimental observation by X-ray and neutron scattering
-
Svergun D.I., Richard S., Koch M.H., Sayers Z., Kuprin S., Zaccai G. Protein hydration in solution. experimental observation by X-ray and neutron scattering Proc. Natl. Acad. Sci. USA. 95:1998;2267-2272
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 2267-2272
-
-
Svergun, D.I.1
Richard, S.2
Koch, M.H.3
Sayers, Z.4
Kuprin, S.5
Zaccai, G.6
-
45
-
-
0030783569
-
Molecular and biological constraints on ligand-binding affinity and specificity
-
Szwajkajzer D., Carey J. Molecular and biological constraints on ligand-binding affinity and specificity. Biopolymers. 44:1997;181-198
-
(1997)
Biopolymers
, vol.44
, pp. 181-198
-
-
Szwajkajzer, D.1
Carey, J.2
-
46
-
-
0026596758
-
Ordered self-assembly of polypeptide fragments to form nativelike dimeric trp repressor
-
Tasayco M.L., Carey J. Ordered self-assembly of polypeptide fragments to form nativelike dimeric trp repressor. Science. 255:1992;594-597
-
(1992)
Science
, vol.255
, pp. 594-597
-
-
Tasayco, M.L.1
Carey, J.2
-
47
-
-
0034980394
-
Two structures of cyclophilin 40: Folding and fidelity in the TPR domains
-
Taylor P., Dornan J., Carrello A., Minchin R.F., Ratajczak T., Walkinshaw M.D. Two structures of cyclophilin 40. folding and fidelity in the TPR domains Structure (Camb). 9:2001;431-438
-
(2001)
Structure (Camb)
, vol.9
, pp. 431-438
-
-
Taylor, P.1
Dornan, J.2
Carrello, A.3
Minchin, R.F.4
Ratajczak, T.5
Walkinshaw, M.D.6
-
48
-
-
0037044329
-
Three-dimensional solution NMR structure of Apo-L75F-TrpR, a temperature-sensitive mutant of the tryptophan repressor protein
-
Tyler R., Pelczer I., Carey J., Copie V. Three-dimensional solution NMR structure of Apo-L75F-TrpR, a temperature-sensitive mutant of the tryptophan repressor protein. Biochemistry. 41:2002;11954-11962
-
(2002)
Biochemistry
, vol.41
, pp. 11954-11962
-
-
Tyler, R.1
Pelczer, I.2
Carey, J.3
Copie, V.4
-
49
-
-
0032922193
-
Sfcheck: A unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model
-
Vaguine A.A., Richelle J., Wodak S.J. Sfcheck. a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model Acta Crystallogr. D Biol. Crystallogr. 55:1999;191-205
-
(1999)
Acta Crystallogr. D Biol. Crystallogr.
, vol.55
, pp. 191-205
-
-
Vaguine, A.A.1
Richelle, J.2
Wodak, S.J.3
-
51
-
-
0032858664
-
Cooperative folding units of escherichia coli tryptophan repressor
-
Wallqvist A., Lavoie T.A., Chanatry J.A., Covell D.G., Carey J. Cooperative folding units of escherichia coli tryptophan repressor. Biophys. J. 77:1999;1619-1626
-
(1999)
Biophys. J.
, vol.77
, pp. 1619-1626
-
-
Wallqvist, A.1
Lavoie, T.A.2
Chanatry, J.A.3
Covell, D.G.4
Carey, J.5
-
53
-
-
0033532212
-
Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping
-
Yang F., Bewley C.A., Louis J.M., Gustafson K.R., Boyd M.R., Gronenborn A.M., Clore G.M., Wlodawer A. Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping. J. Mol. Biol. 288:1999;403-412
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 403-412
-
-
Yang, F.1
Bewley, C.A.2
Louis, J.M.3
Gustafson, K.R.4
Boyd, M.R.5
Gronenborn, A.M.6
Clore, G.M.7
Wlodawer, A.8
-
54
-
-
0036377156
-
Amyloid-fibril formation. Proposed mechanisms and relevance to conformational disease
-
Zerovnik E. Amyloid-fibril formation. Proposed mechanisms and relevance to conformational disease. Eur. J. Biochem. 269:2002;3362-3371
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3362-3371
-
-
Zerovnik, E.1
-
55
-
-
0023256884
-
The crystal structure of trp aporepressor at 1.8 Å shows how binding tryptophan enhances DNA affinity
-
Zhang R.G., Joachimiak A., Lawson C.L., Schevitz R.W., Otwinowski Z., Sigler P.B. The crystal structure of trp aporepressor at 1.8 Å shows how binding tryptophan enhances DNA affinity. Nature. 327:1987;591-597
-
(1987)
Nature
, vol.327
, pp. 591-597
-
-
Zhang, R.G.1
Joachimiak, A.2
Lawson, C.L.3
Schevitz, R.W.4
Otwinowski, Z.5
Sigler, P.B.6
-
56
-
-
0027528411
-
Refined solution structures of the Escherichia coli trp holo- and aporepressor
-
Zhao D., Arrowsmith C.H., Jia X., Jardetzky O. Refined solution structures of the Escherichia coli trp holo- and aporepressor. J. Mol. Biol. 229:1993;735-746
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 735-746
-
-
Zhao, D.1
Arrowsmith, C.H.2
Jia, X.3
Jardetzky, O.4
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