Development of a multiplex PCR-ligase detection reaction assay for diagnosis of infection by the four parasite species causing malaria in humans

Journal of Clinical Microbiology

Volumn 42, Issue 6, 2004, Pages 2403-2410

  McNamara, David T ^a   Thomson, Jodi M ^a   Kasehagen, Laurin J ^a   Zimmerman, Peter A ^a  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RIBOSOME RNA;

ARTICLE; BIOINFORMATICS; BLOOD SAMPLING; BLOOD SMEAR; DIAGNOSTIC TEST; HUMAN; MALARIA; MULTIPLEX POLYMERASE CHAIN REACTION LIGASE DETECTION REACTION ASSAY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMODIUM; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SPECIES DIFFERENCE;

ANIMALS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DNA, PROTOZOAN; HUMANS; MALARIA; MOLECULAR SEQUENCE DATA; PLASMODIUM; POLYMERASE CHAIN REACTION; SPECIES SPECIFICITY;

PLASMODIUM FALCIPARUM; PROTOZOA;

EID: 2942558867     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.42.6.2403-2410.2004     Document Type: Article

References (34)

1. Babiker, H. A., A. M. Abdel-Muhsin, L. C. Ranford-Cartwright, G. Satti, and D. Walliker. 1998. Characteristics of Plasmodium falciparum parasites that survive the lengthy dry season in eastern Sudan where malaria transmission is markedly seasonal. Am. J. Trop. Med. Hyg. 59:582-590.
2. Barker, R. H., Jr., T. Banchongaksorn, J. M. Courval, W. Suwonkerd, K. Rimwungtragoon, and D. F. Wirth. 1994. Plasmodium falciparum and P. vivax: factors affecting sensitivity and specificity of PCR-based diagnosis of malaria. Exp. Parasitol. 79:41-49.
3. Bottius, E., A. Guanzirolli, J. F. Trape, C. Rogier, L. Konate, and P. Druilhe. 1996. Malaria: even more chronic in nature than previously thought; evidence for subpatent parasitaemia detectable by the polymerase chain reaction. Trans. R. Soc. Trop. Med. Hyg. 90:15-19.
4. Cheesman, S. J., J. C. de Roode, A. F. Read, and R. Carter. 2003. Real-time quantitative PCR for analysis of genetically mixed infections of malaria parasites: technique validation and applications. Mol. Biochem. Parasitol. 131:83-91.
5. Day, D. J., P. W. Speiser, P. C. White, and F. Barany. 1995. Detection of steroid 21-hydroxylase alleles using gene-specific PCR and a multiplexed ligation detection reaction. Genomics 29:152-162.
6. Djimde, A., O. K. Doumbo, J. F. Cortese, K. Kayentao, S. Doumbo, Y. Diourte, A. Dicko, X. Z. Su, T. Nomura, D. A. Fidock, T. E. Wellems, C. V. Plowe, and D. Coulibaly. 2001. A molecular marker for chloroquine-resistant falciparum malaria. N. Engl. J. Med. 344:257-263.
7. Genton, B., F. al-Yaman, H. P. Beck, J. Hii, S. Mellor, A. Narara, N. Gibson, T. Smith, and M. P. Alpers. 1995. The epidemiology of malaria in the Wosera area, East Sepik Province, Papua New Guinea, in preparation for vaccine trials. I. Malariometric indices and immunity. Ann. Trop. Med. Parasitol. 89:359-376.
8. Genton, B., I. Betuela, I. Felger, F. Al-Yaman, R. F. Anders, A. Saul, L. Rare, M. Baisor, K. Lorry, G. V. Brown, D. Pye, D. O. Irving, T. A. Smith, H. P. Beck, and M. P. Alpers. 2002. A recombinant blood-stage malaria vaccine reduces Plasmodium falciparum density and exerts selective pressure on parasite populations in a phase 1-2b trial in Papua New Guinea. J. Infect. Dis. 185:820-827.
9. Gravenor, M. B., A. L. Lloyd, P. G. Kremsner, M. A. Missinou, M. English, K. Marsh, and D. Kwiatkowski. 2002. A model for estimating total parasite load in falciparum malaria patients. J. Theor. Biol. 217:137-148.
10. Hermsen, C. C., D. S. Telgt, E. H. Linders, L. A. van de Locht, W. M. Eling, E. J. Mensink, and R. W. Sauerwein. 2001. Detection of Plasmodium falciparum malaria parasites in vivo by real-time quantitative PCR. Mol. Biochem. Parasitol. 118:247-251.
11. Iannone, M. A., J. D. Taylor, J. Chen, M. S. Li, P. Rivers, K. A. Slentz-Kesler, and M. P. Weiner. 2000. Multiplexed single nucleotide polymorphism genotyping by oligonucleotide ligation and flow cytometry. Cytometry 39:131-140.
12. Kimura, M., O. Kaneko, Q. Liu, M. Zhou, F. Kawamoto, Y. Wataya, S. Otani, Y. Yamaguchi, and K. Tanabe. 1997. Identification of the four species of human malaria parasites by nested PCR that targets variant sequences in the small subunit rRNA gene. Parasitol. Int. 46:91-95.
13. Lee, M. A., C. H. Tan, L. T. Aw, C. S. Tang, M. Singh, S. H. Lee, H. P. Chia, and E. P. Yap. 2002. Real-time fluorescence-based PCR for detection of malaria parasites. J. Clin. Microbiol. 40:4343-4345.
14. Li, J., R. A. Wirtz, G. A. McConkey, J. Sattabongkot, A. P. Waters, M. J. Rogers, and T. F. McCutchan. 1995. Plasmodium: genus-conserved primers for species identification and quantitation. Exp. Parasitol. 81:182-190.
15. Luxemburger, C., F. Ricci, F. Nosten, D. Raimond, S. Bathet, and N. J. White. 1997. The epidemiology of severe malaria in an area of low transmission in Thailand. Trans. R. Soc. Trop. Med. Hyg. 91:256-262.
16. Masinde, G. L., D. J. Krogstad, D. M. Gordon, and P. E. Duffy. 1998. Immunization with SPf66 and subsequent infection with homologous and heterologous Plasmodium falciparum parasites. Am. J. Trop. Med. Hyg. 59:600-605.
17. May, J., F. P. Mockenhaupt, O. G. Ademowo, A. G. Falusi, P. E. Olumese, U. Bienzle, and C. G. Meyer. 1999. High rate of mixed and subpatent malarial infections in southwest Nigeria. Am. J. Trop. Med. Hyg. 61:339-343.
18. Mehlotra, R. K., H. Fujioka, P. D. Roepe, O. Janneh, L. M. Ursos, V. Jacobs-Lorena, D. T. McNamara, M. J. Bockarie, J. W. Kazura, D. E. Kyle, D. A. Fidock, and P. A. Zimmerman. 2001. Evolution of a unique Plasmodium falciparum chloroquine-resistance phenotype in association with pfcrt polymorphism in Papua New Guinea and South America. Proc. Natl. Acad. Sci. USA 98:12689-12694.
19. Mehlotra, R. K., L. J. Kasehagen, M. Baisor, K. Lorry, J. W. Kazura, M. J. Bockarie, and P. A. Zimmerman. 2002. Malaria infections are randomly distributed in diverse holoendemic areas of Papua New Guinea. Am. J. Trop. Med. Hyg. 67:555-562.
20. Mehlotra, R. K., K. Lorry, W. Kastens, S. M. Miller, M. P. Alpers, M. Bockarie, J. W. Kazura, and P. A. Zimmerman. 2000. Random distribution of mixed species malaria infections in Papua New Guinea. Am. J. Trop. Med. Hyg. 62:225-231.
21. Mockenhaupt, F. P., U. Ulmen, C. von Gaertner, G. Bedu-Addo, and U. Bienzle. 2002. Diagnosis of placental malaria. J. Clin. Microbiol. 40:306-308.
22. Moody, A. 2002. Rapid diagnostic tests for malaria parasites. Clin. Microbiol. Rev. 15:66-78.
23. Plowe, C. V., A. Djimde, M. Bouare, O. Doumbo, and T. E. Wellems. 1995. Pyrimethamine and proguanil resistance-conferring mutations in Plasmodium falciparum dihydrofolate reductase: polymerase chain reaction methods for surveillance in Africa. Am. J. Trop. Med. Hyg. 52:565-568.
24. Polanco, J. C., J. A. Rodriguez, V. Corredor, and M. A. Patarroyo. 2002. Plasmodium vivax: parasitemia determination by real-time quantitative PCR in Aotus monkeys. Exp. Parasitol. 100:131-134.
25. Reeder, J. C., K. H. Rieckmann, B. Genton, K. Lorry, B. Wines, and A. F. Cowman. 1996. Point mutations in the dihydrofolate reductase and dihydropteroate synthetase genes and in vitro susceptibility to pyrimethamine and cycloguanil of Plasmodium falciparum isolates from Papua New Guinea. Am. J. Trop. Med. Hyg. 55:209-213.
26. Roper, C., W. Richardson, I. M. Elhassan, H. Giha, L. Hviid, G. M. Satti, T. G. Theander, and D. E. Arnot. 1998. Seasonal changes in the Plasmodium falciparum population in individuals and their relationship to clinical malaria: a longitudinal study in a Sudanese village. Parasitology 116(Pt 6):501-510.
27. Rubio, J. M., R. J. Post, W. M. van Leeuwen, M. C. Henry, G. Lindergard, and M. Hommel. 2002. Alternative polymerase chain reaction method to identify Plasmodium species in human blood samples: the semi-nested multiplex malaria PCR (SnM-PCR). Trans. R. Soc. Trop. Med. Hyg. 96(Suppl. 1):S199-S204.
28. Smith, T., B. Genton, K. Baea, N. Gibson, A. Narara, and M. P. Alpers. 2001. Prospective risk of morbidity in relation to malaria infection in an area of high endemicity of multiple species of Plasmodium. Am. J. Trop. Med. Hyg. 64:262-267.
29. Snounou, G., S. Viriyakosol, W. Jarra, S. Thaithong, and K. N. Brown. 1993. Identification of the four human malaria parasite species in field samples by the polymerase chain reaction and detection of a high prevalence of mixed infections. Mol. Biochem. Parasitol. 58:283-292.
30. Tobian, A. A., R. K. Mehlotra, I. Malhotra, A. Wamachi, P. Mungai, D. Koech, J. Ouma, P. Zimmerman, and C. L. King. 2000. Frequent umbilical cord-blood and maternal-blood infections with Plasmodium falciparum, P. malariae, and P. ovale in Kenya. J. Infect. Dis. 182:558-563.
31. Trager, W., and J. B. Jensen. 1976. Human malaria parasites in continuous culture. Science 193:673-675.
32. World Health Organization. 2000. New perspectives in malaria diagnosis. Report WHO/MAL/2000.1091. World Health Organization, Geneva, Switzerland.
33. Zhou, M., Q. Liu, C. Wongsrichanalai, W. Suwonkerd, K. Panart, S. Prajakwong, A. Pensiri, M. Kimura, H. Matsuoka, M. U. Ferreira, S. Isomura, and F. Kawamoto. 1998. High prevalence of Plasmodium malariae and Plasmodium ovale in malaria patients along the Thai-Myanmar border, as revealed by acridine orange staining and PCR-based diagnoses. Trop. Med. Int. Health 3:304-312.
34. Zwetyenga, J., C. Rogier, A. Spiegel, D. Fontenille, J. F. Trape, and O. Mercereau-Puijalon. 1999. A cohort study of Plasmodium falciparum diversity during the dry season in Ndiop, a Senegalese village with seasonal, mesoendemic malaria. Trans. R. Soc. Trop. Med. Hyg. 93:375-380.