Sequences upstream of the homologous cis-elements of the Adh adult enhancer of Drosophila are required for maximal levels of Adh gene transcription in adults of Scaptodrosophila lebanonensis

Genetics

Volumn 167, Issue 1, 2004, Pages 289-299

  Papaceit, Montserrat ^a   Orengo, Dorcas ^a   Juan, Elvira ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; DNA MINISATELLITE; MESSENGER RNA;

5' UNTRANSLATED REGION; ADH GENE; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DNA FLANKING REGION; DNA FOOTPRINTING; DROSOPHILA; DROSOPHILA MELANOGASTER; ENHANCER REGION; EVOLUTION; GENE; GENE DELETION; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETIC TRANSFORMATION; GERM LINE; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION; REAL TIME POLYMERASE CHAIN REACTION; SCAPTODROSOPHILA LEBANONENSIS; SEQUENCE HOMOLOGY; TISSUE SPECIFICITY; TRANSCRIPTION INITIATION SITE; TRANSGENE;

ALCOHOL OXIDOREDUCTASES; ALLELES; ANIMALS; BASE SEQUENCE; DROSOPHILA; DROSOPHILA PROTEINS; ENHANCER ELEMENTS (GENETICS); MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PLASMIDS; PROMOTER REGIONS (GENETICS); REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RIBONUCLEASES; RNA; RNA, MESSENGER; TISSUE DISTRIBUTION; TRANSCRIPTION, GENETIC; TRANSGENES;

ANIMALIA; ARACHNIDA; DROSOPHILA MELANOGASTER; DROSOPHILIDAE; HEXAPODA; MELANOGASTER; SCAPTODROSOPHILA; SCAPTODROSOPHILA LEBANONENSIS;

EID: 2942555311     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.167.1.289     Document Type: Article

References (52)

1. ABEL, T., R. BHATT and T. MANIATIS, 1992 A Drosophila CREB/ATF transcriptional activator binds to both fat body- and liver-specific regulatory elements. Genes Dev. 6: 466-480.
2. AMADOR, A., and E. JUAN, 1999 Nonfixed duplication containing the Adh gene and a truncated form of the Adhr gene in the Drosophila funebris species group: different modes of evolution of Adh relative to Adhr in Drosophila. Mol. Biol. Evol. 16: 1439-1456.
3. AMADOR, A., M. PAPACEIT and E. JUAN, 2001 Evolutionary change in the structure of the regulatory region that drives tissue and temporally regulated expression of alcohol dehydrogenase gene in Drosophila funebris. Insect Mol. Biol. 10: 237-247.
4. ANDERSON, S. M., and J. F. MCDONALD, 1983 Biochemical and molecular analysis of naturally occurring Adh variants in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 80: 4798-4802.
5. ASHBURNER, M., 1989 Drosophila: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
6. AYER, S., and C. BENYAJATI, 1990 Conserved enhancer and silencer elements responsible for differential Adh transcription in Drosophila cell lines. Mol. Cell. Biol. 10: 3512-3523.
7. AYER, S., and C. BENYAJATI, 1992 The binding site of a steroid hormone receptor-like protein within the Drosophila Adh adult enhancer is required for high levels of tissue-specific alcohol dehydrogenase expression. Mol. Cell. Biol. 12: 661-673.
8. AYER, S., N. WALKER, M. MOSAMMAPARAST, J. P. NELSON, B. Z. SHILO et al., 1993 Activation and repression of Drosophila alcohol dehydrogenase distal transcription by two steroid hormone receptor superfamily members binding to a common response element. Nucleic Acids Res. 21: 1619-1627.
9. BATTERHAM, P., J. A. LOVETT, W. T. STARMER and D. T. SULLIVAN, 1983 Differential regulation of duplicate alcohol dehydrogenase genes in Drosophila mojavensis. Dev. Biol. 96: 346-354.
10. BENYAJATI, C., and J. F. DRAY, 1984 Cloned Drosophila alcohol dehydrogenase genes are correctly expressed after transfection into Drosophila cells in culture. Proc. Natl. Acad. Sci. USA 81: 1701-1705.
11. BENYAJATI, C., N. SPOEREL, H. HAYMERLE and M. ASHBURNER, 1983 The messenger RNA for alcohol dehydrogenase in Drosophila melanogaster differs in its 5′ end in different developmental stages. Cell 33: 125-133.
12. BENYAJATI, C., S. AYER, J. MCKEON, A. EWEL and J. HUANG, 1987 Roles of cis-acting elements and chromatin structure in Drosophila alcohol dehydrogenase gene expression. Nucleic Acids Res. 15: 7903-7920.
13. CHIRGWIN, J. M., A. L. PRZYBYLA, R.J. MACDONALD and W. J. RUTTER, 1970 Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochem. J. 18: 5294-5299.
14. COHN, M. A., I. HJELMSO, L. C. WU, P. GULDBERG, E. M. LUKANIDIN et al., 2001 Characterization of Sp1, AP-1, CBF and KRC binding sites and minisatellite DNA as functional elements of the metastasis-associated mts1/S100A4 gene intronic enhancer. Nucleic Acids Res. 29: 3335-3346.
15. CORBIN, V., and T. MANIATIS, 1989 Role of transcriptional interference in the Drosophila melanogaster Adh promoter switch. Nature 337: 279-282.
16. CORBIN, V., and T. MANIATIS, 1990 Identification of cis-regulatory elements required for larval expression of the Drosophila melanogaster alcohol dehydrogenase gene. Genetics 124: 637-646.
17. DEVEREUX, J., P. HAEBERLI and O. SMITHIES, 1984 A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12: 387-395.
18. FALB, D., and T. MANIATIS, 1992a A conserved regulatory unit implicated in tissue-specific gene expression in Drosophila and man. Genes Dev. 6: 454-465.
19. FALB, D., and T. MANIATIS, 1992b Drosophila transcriptional repressor protein that binds specifically to negative control elements in fat body enhancers. Mol. Cell. Biol. 12: 4093-4103.
20. FICKETT, J. W, and W. W. WASSERMAN, 2000 Discovery and modelling of transcriptional regulatory regions. Curr. Opin. Biotechnol. 11: 19-24.
21. FISCHER, J. A., and T. MANIATIS, 1985 Structure and transcription of the Drosophila mulleri alcohol dehydrogenase genes. Nucleic Acids Res. 13: 6899-6917.
22. FISCHER, J. A., and T. MANIATIS, 1986 Regulatory elements involved in Drosophila Adh gene expression are conserved in divergent species and separate elements mediate expression in different tissues. EMBO J. 5: 1275-1289.
23. GASSER, S. M., and U. K. LAEMMLI, 1986 Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell 46: 521-530.
24. HARDISON, R. C., 2002 Conserved non-coding sequences are reliable guides to regulatory elements. Trends Genet. 16: 369-372.
25. HEBERLEIN, U., and R. TJIAN, 1988 Temporal pattern of alcohol dehydrogenase gene transcription reproduced by Drosophila stage-specific embryonic extracts. Nature 331: 410-415.
26. JOHNSON, F. M., and C. DENNISTON, 1964 Genetic variation of alcohol dehydrogenase in Drosophila melanogaster. Nature 204: 906-907.
27. S. Biochem. J. 189: 105-110.
28. JUAN, E., M. PAPACEIT and A. QUINTANA, 1994 Nucleotide sequence of the genomic region encompassing Adh and Adh-dup genes of D. lebanonensis (Scaptodrosophila): gene expression and evolutionary relationships. J. Mol. Evol. 38: 455-467.
29. KRONTIRIS, T. G., 1995 Minisatellites and human disease. Science 269: 1682-1683.
30. LAEMMLI, U. K., E. KAS, L. POLJAK and Y. ADACHI, 1992 Scaffold-associated regions: cis-acting determinants of chromatin structural loops and functional domains. Curr. Opin. Genet. Dev. 2: 275-285.
31. LAURIE, C. C., and L. F. STAM, 1988 Quantitative analysis of RNA produced by slow and fast alleles of Adh in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 85: 5161-5165.
32. LUDWIG, M., 2002 Functional evolution of noncoding DNA. Curr. Opin. Genet. Dev. 12: 634-639.
33. MCKENZIE, R. W., and M. D. BRENNAN, 1998 cis-acting sequences controlling the adult-specific transcription pattern of the Drosophila affinidisjuncta Adh gene. Dev. Genet. 23: 119-127.
34. MONTGOMERY, E., B. CHARLESWORTH and C. H. LANGLEY, 1987 A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster. Genet. Res. 49: 31-42.
35. NURMINSKY, D. I., E. N. MORIYAMA, E. R. LOZOVSKAYA and D. L. HARTL, 1996 Molecular phylogeny and genome evolution in the Drosophila virilis species group: duplications of the alcohol dehydrogenase gene. Mol. Biol. Evol. 13: 132-149.
36. ORENGO, D., M. PAPACEIT and E. JUAN, 2004 A minisatellite with fold-back structure is included in the 5′ region of the Adh gene of Scaptodrosophila lebanonensis. J. Hered. 95: 62-69.
37. PAQUETTE, J., N. GIANNOUKAKIS, C. POLYCHRONAKOS, P. VAFIADIS and C. DEAL, 1998 The INS 5′ variable number of tandem repeats is associated with IGF2 expression in humans. J. Biol. Chem. 273: 14158-14164.
38. PENNACHIO, L. A., and E. M. RUBIN, 2001 Genomic strategies to identify mammalian regulatory sequences. Nat. Rev. Genet. 2: 100-109.
39. POSAKONY, J. W., J. A. FISCHER and T. MANIATIS, 1985 Identification of DNA sequences required for the regulation of Drosophila alcohol dehydrogenase gene expression. Cold Spring Harbor Symp. Quant. Biol. 50: 515-520.
40. ROBERTSON, H. M., C. R. PRESTON, R. W. PHILLIS, D. M. JOHNSON-SCHLITZ, W. K. BENZ et al., 1988 A stable genome source of P element transposase in Drosophila melanogaster. Genetics 118: 461-470.
41. ROWAN, R. G., and W. J. DICKINSON, 1986 Two alternative transcripts coding for alcohol dehydrogenase accumulate with different developmental specificities in different species of picture-winged Drosophila. Genetics 114: 435-452.
42. ROWAN, R. G., M. D. BRENNAN and W. J. DICKINSON, 1986 Developmentally regulated RNA transcripts coding for alcohol dehydrogenase in Drosophila affinidisjuncta. Genetics 114: 405-433.
43. ROZAS, J., and R. ROZAS, 1999 DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
44. RUBIN, G. M., and A. C. SPRADLING, 1982 Genetic transformation of Drosophila with transposable element vectors. Science 218:348-353.
45. SAVAKIS, C., M. ASHBURNER and J. H. WILLIS, 1986 The expression of the gene coding for alcohol dehydrogenase during the development of Drosophila melanogaster. Dev. Biol. 114: 194-207.
46. SIEGAL, M. L., and D. L. HARTL, 1996 Transgene coplacement and high efficiency site-specific recombination with the Cre/loxP system in Drosophila. Genetics 144: 714-726.
47. SIEGAL, M. L., and D. L. HARTL, 1998 An experimental test for lineage-specific position effects on alcohol dehydrogenase (Adh) genes in Drosophila. Proc. Natl. Acad. Sci. USA 95: 15513-15518.
48. STELLER, H., and V. PIRROTTA, 1985 A transposable P vector that confers selectable G-418 resistance to Drosophila larvae. EMBO J. 4: 167-172.
49. SULLIVAN, D. T., P. W. ATKINSON and W. T. STARMER, 1990 Molecular evolution of the alcohol dehydrogenases genes in the genus Drosophila. Evol. Biol. 24: 107-147.
50. URSPRUNG, H., W. SOFER and N. BURROUGHS, 1970 Ontogeny and tissue distribution of alcohol dehydrogenase in Drosophila melanogaster. Wilhelm Roux's Arch. Dev. Biol. 164: 201-208.
51. WINBERG, J. O., R. HOVIK, M. J. MCKINLEY, E. JUAN and D. R. GONZALEZ, 1986 Biochemical properties of alcohol dehydrogenase from Drosophila lebanonensis. Biochem. J. 235: 481-490.
52. WU, C. Y., J. MOTE and M. D. BRENNAN, 1990 Tissue-specific expression phenotypes of Hawaiian Drosophila Adh genes in Drosophila melanogaster transformants. Genetics 125: 599-610.