A Minisatellite with Fold-Back Structure is Included in the 5′-Flanking Region of the Adh Gene of Scaptodrosophila lebanonensis

Journal of Heredity

Volumn 95, Issue 1, 2004, Pages 62-69

  Orengo, D J ^a   Papaceit, M ^a   Juan, E ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; FLY; IN SITU HYBRIDIZATION; INTRASPECIFIC VARIATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SCAPTODROSOPHILA LEBANONENSIS; TANDEM REPEAT;

5' FLANKING REGION; ALCOHOL DEHYDROGENASE; ANIMALS; BASE SEQUENCE; DNA; DROSOPHILIDAE; GENES, INSECT; IN SITU HYBRIDIZATION; MINISATELLITE REPEATS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

SCAPTODROSOPHILA; SCAPTODROSOPHILA LEBANONENSIS;

EID: 1042301283     PISSN: 00221503     EISSN: None     Source Type: Journal    
DOI: 10.1093/jhered/esh005     Document Type: Article

References (31)

1. Armour JAL and Jeffreys AJ, 1992. Biology and applications of human minisatellite loci. Curr Opin Genet Dev 2:850-856.
2. Ashburner M, 1989. Drosophila A laboratory manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
3. Ashburner M, Misra S, Roote J, Lewis SE, Blazej R, Davis T, Doyle C, Galle R, George R, Harris N, Hartzell G, Harvey D, Hong L, Houston K, Hoskins R, Johnson G, Martin C, Moshrefi A, Palazzolo M, Reese MG, Spradling A, Tsang G, Wan K, Whitelaw K, Kimmel B, Celniker S, and Rubin GM, 1999. An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster, the Adh region. Genetics 153:179-219.
4. Bachtrog D, Weiss S, Zangerl B, Brem G, and Schlotterer C, 1999. Distribution of dinucleotide microsatellites in the Drosophila melanogaster genome. Mol Biol Evol 16:602-610.
5. Berendes HD and Thijssen WT, 1971. Developmental changes in genome activity in Drosophila lebanonensis casteeli Pipkin. Chromosoma 33:345-360.
6. Bingham PM and Zachar Z, 1989. Retrotransposons and the FB transposons from Drosophila melanogaster In: Mobile DNA (Berg DE and Howe MM, eds). Washington, DC: American Society of Microbiology; 485-502.
7. Brutlag DL, 1980. Molecular arrangement and evolution of heterochromatic DNA. Annu Rev Genet 14:121-144.
8. Cavener DR, 1987. Comparison of the consensus sequence flanking translational start sites in Drosophila and vertebrates. Nucleic Acids Res 15:1353-1361.
9. Charlesworth B, Jarne P, and Assimacopoulos S, 1994. The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. III. Element abundances in heterochromatin. Genet Res 64:183-197.
10. Devereux J, Haeberli P, and Smithies O, 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387-395.
11. DiBartolomeis SM, Tartof KD, and Jackson FR, 1992. A superfamily of Drosophila satellite related (SR) DNA repeats restricted to the X chromosome euchromatin. Nucleic Acids Res 20:1113-1116.
12. Finnegan DJ, 1982. The fold-back elements of Drosophila. Nature 297: 181-182.
13. FlyBase Consortium, 2003. The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res 31:172-175. Available at http://flybase.org/.
14. Gall JG, Cohen EH, and Polan ML, 1971. Repetitive DNA sequences in Drosophila. Chromosoma 33:319-344.
15. Gasser SM and Laemmli UK, 1986. Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell 46:521-530.
16. Gatti M, Bonaccorsi S, and Pimpinelli S, 1994. Looking at Drosophila mitotic chromosomes. Methods Cell Biol 44:371-391.
17. Gilson E, Laroche T, and Gasser SM, 1993. Telomeres and the functional architecture of the nucleus. Trends Cell Biol 3:128-134.
18. Hart CM and Laemmli UK, 1998. Facilitation of chromatin dynamics by SARs. Curr Opin Genet Dev 8:519-525.
19. Jacobson JW, Guo W, and Hughes CR, 1992. A Drosophila minisatellite contains multiple chi sequences. Insect Biochem Mol Biol 22:785-792.
20. Jeffreys AJ, Allen MJ, Armour JA, Collick A, Dubrova Y, Fretwell N, Guram T, Jobling M, May CA, Neil DL, and Neumann R, 1995. Mutation processes at human minisatellites. Electrophoresis 16:1577-1585.
21. Juan E, Papaceit M, and Quintana A, 1994. Nucleotide sequence of the genomic region encompassing Adh and Adh-dup genes of D. lebanonensis (Scaptodrosophila): gene expression and evolutionary relationships. J Mol Evol 38:455-467.
22. Kennedy GC, German MS, and Rutter WJ, 1995. The minisatellite in the diabetes susceptibility locus IDDM2 regulates insulin transcription. Nat Genet 9:293-298.
23. Kurenova E, Champion L, Biessmann H, and Mason JM, 1998. Directional gene silencing induced by a complex subtelomeric satellite from Drosophila. Chromosoma 107:311-320.
24. Li WH, 1997. Molecular evolution. Sunderland, MA: Sinauer Associates.
25. Lohe AR, Hilliker AJ, and Roberts PA, 1993. Mapping simple repeated DNA sequences in heterochromatin of Drosophila melanogaster. Genetics 134:1149-1174.
26. Montgomery E, Charlesworth B, and Langley CH, 1987. A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster. Genet Res 49:31-41.
27. Papaceit M and Juan E, 1993. Chromosomal homologies between Drosophila lebanonensis and D. melanogaster determined by in situ hybridization. Chromosoma 102:361-368.
28. Pearson WR, 1990. Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 183:63-98.
29. Rozas J and Rozas R, 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
30. Sambrook J, Fritsch EF, and Maniatis T, 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
31. Walter MF, Jang C, Kasravi B, Donath J, Mechler BM, Mason JM, and Biessmann H, 1995. DNA organization and polymorphism of a wild-type Drosophila telomere region. Chromosoma 104:229-241.