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Volumn 24, Issue 12, 2004, Pages 5620-5634

Characterization of a mouse recombination hot spot locus encoding a novel non-protein-coding RNA

Author keywords

[No Author keywords available]

Indexed keywords

RNA; RNA POLYMERASE II;

EID: 2942536678     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.24.12.5620-5634.2004     Document Type: Article
Times cited : (41)

References (57)
  • 2
    • 0038052719 scopus 로고    scopus 로고
    • Hot and cold spots of recombination in the human genome: The reason we should find them and how this can be achieved
    • Arnheim, N., P. Calabrese, and M. Nordborg. 2003. Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved. Am. J. Hum. Genet. 73:5-16.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 5-16
    • Arnheim, N.1    Calabrese, P.2    Nordborg, M.3
  • 3
    • 0030690098 scopus 로고    scopus 로고
    • Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions
    • Benham, C., T. Kohwi-Shigematsu, and J. Bode. 1997. Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions. J. Mol. Biol. 274:181-196.
    • (1997) J. Mol. Biol. , vol.274 , pp. 181-196
    • Benham, C.1    Kohwi-Shigematsu, T.2    Bode, J.3
  • 4
    • 0033967853 scopus 로고    scopus 로고
    • The Mouse Genome Database (MGD): Expanding genetic and genomic resources for the laboratory mouse
    • Blake, J. A., J. T. Eppig, J. E. Richardson, M. T. Davisson, et al. 2000. The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. Nucleic Acids Res. 28:108-111.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 108-111
    • Blake, J.A.1    Eppig, J.T.2    Richardson, J.E.3    Davisson, M.T.4
  • 6
    • 0022553738 scopus 로고
    • Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites
    • Cockerill, P. N., and W. T. Garrard. 1986. Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites. Cell 44:273-282.
    • (1986) Cell , vol.44 , pp. 273-282
    • Cockerill, P.N.1    Garrard, W.T.2
  • 7
    • 0042830294 scopus 로고    scopus 로고
    • Distribution of meiotic recombination sites
    • de Massy, B. 2003. Distribution of meiotic recombination sites. Trends Genet. 19:514-522.
    • (2003) Trends Genet. , vol.19 , pp. 514-522
    • De Massy, B.1
  • 8
    • 0028272137 scopus 로고
    • Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA
    • Dobbs, D. L., W. L. Shaiu, and R. M. Benbow. 1994. Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA. Nucleic Acids Res. 22:2479-2489.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2479-2489
    • Dobbs, D.L.1    Shaiu, W.L.2    Benbow, R.M.3
  • 9
    • 0034538502 scopus 로고    scopus 로고
    • The type of DNA attachment sites recovered from nuclear matrix depends on isolation procedure used
    • Donev, R. M. 2000. The type of DNA attachment sites recovered from nuclear matrix depends on isolation procedure used. Mol. Cell. Biochem. 214:103-110.
    • (2000) Mol. Cell. Biochem. , vol.214 , pp. 103-110
    • Donev, R.M.1
  • 10
    • 0037133945 scopus 로고    scopus 로고
    • Computational genomics of noncoding RNA genes
    • Eddy, S. R. 2002. Computational genomics of noncoding RNA genes. Cell 109:137-140.
    • (2002) Cell , vol.109 , pp. 137-140
    • Eddy, S.R.1
  • 11
    • 0024371789 scopus 로고
    • A recombination hotspot in the LTR of a mouse retrotraosposon identified in an in vitro system
    • Edelmann, W., B. Kroger, M. Goller, and I. Horak. 1989. A recombination hotspot in the LTR of a mouse retrotraosposon identified in an in vitro system. Cell 57:937-946.
    • (1989) Cell , vol.57 , pp. 937-946
    • Edelmann, W.1    Kroger, B.2    Goller, M.3    Horak, I.4
  • 13
    • 0034633494 scopus 로고    scopus 로고
    • Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae
    • Gerton, J. L., J. DeRisi, R. Shroff, M. Lichten, P. O. Brown, and T. D. Petes. 2000. Global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 97:11383-11390.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 11383-11390
    • Gerton, J.L.1    DeRisi, J.2    Shroff, R.3    Lichten, M.4    Brown, P.O.5    Petes, T.D.6
  • 14
    • 0036787813 scopus 로고    scopus 로고
    • An initiation site for meiotic crossing-over and gene conversion in the mouse
    • Guillon, H., and B. de Massy. 2002. An initiation site for meiotic crossing-over and gene conversion in the mouse. Nat. Genet. 32:296-299.
    • (2002) Nat. Genet. , vol.32 , pp. 296-299
    • Guillon, H.1    De Massy, B.2
  • 15
    • 0028146106 scopus 로고
    • Meiotic gene conversion tract length distribution within the rosy locus of Drosophila melanogaster
    • Hilliker, A. J., G. Harauz, A. G. Reaume, M. Gray, S. H. Clark, and A. Chovnick. 1994. Meiotic gene conversion tract length distribution within the rosy locus of Drosophila melanogaster. Genetics 137:1019-1026.
    • (1994) Genetics , vol.137 , pp. 1019-1026
    • Hilliker, A.J.1    Harauz, G.2    Reaume, A.G.3    Gray, M.4    Clark, S.H.5    Chovnick, A.6
  • 16
    • 0023612034 scopus 로고
    • Estimating the recombination parameter of a finite population model without selection
    • Hudson, R. R. 1987. Estimating the recombination parameter of a finite population model without selection. Genet. Res. 50:245-250.
    • (1987) Genet. Res. , vol.50 , pp. 245-250
    • Hudson, R.R.1
  • 17
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R. R., and N. L. Kaplan. 1985. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111:147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 18
    • 0036989929 scopus 로고    scopus 로고
    • Molecular characterization of the Pb recombination hotspot in the mouse major histocompatibility complex class II region
    • Isobe, T., M. Yoshino, K. Mizuno, K. F. Lindahl, T. Kolde, S. Gaudieri, T. Gojobori, and T. Shiroishi. 2002. Molecular characterization of the Pb recombination hotspot in the mouse major histocompatibility complex class II region. Genomics 80:229-235.
    • (2002) Genomics , vol.80 , pp. 229-235
    • Isobe, T.1    Yoshino, M.2    Mizuno, K.3    Lindahl, K.F.4    Kolde, T.5    Gaudieri, S.6    Gojobori, T.7    Shiroishi, T.8
  • 19
    • 0034701292 scopus 로고    scopus 로고
    • High resolution analysis of haplotype diversity and meiotic crossover in the human TAP2 recombination hotspot
    • Jeffreys, A. J., A. Ritchie, and R. Neumann. 2000. High resolution analysis of haplotype diversity and meiotic crossover in the human TAP2 recombination hotspot. Hum. Mol. Genet. 9:725-733.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 725-733
    • Jeffreys, A.J.1    Ritchie, A.2    Neumann, R.3
  • 20
    • 0032133324 scopus 로고    scopus 로고
    • High resolution mapping of crossovers in human sperm defines a minisatellite associated hotspot
    • Jeffreys, A. J., J. Murray, and R. Neumann. 1998. High resolution mapping of crossovers in human sperm defines a minisatellite associated hotspot. Mol. Cell 2:267-273.
    • (1998) Mol. Cell , vol.2 , pp. 267-273
    • Jeffreys, A.J.1    Murray, J.2    Neumann, R.3
  • 21
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys, A. J., L. Kauppi, and R. Neumann. 2001. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29:217-222.
    • (2001) Nat. Genet. , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 22
    • 0029918652 scopus 로고    scopus 로고
    • Ea recombination hotspot in the mouse major histocompatibility complex maps to the fourth intron of the Ea gene
    • Khambata, S., J. Mody, A. Modzelewski, D. Heine, and H. C. Passmore. 1996. Ea recombination hotspot in the mouse major histocompatibility complex maps to the fourth intron of the Ea gene. Genome Res. 6:195-201.
    • (1996) Genome Res. , vol.6 , pp. 195-201
    • Khambata, S.1    Mody, J.2    Modzelewski, A.3    Heine, D.4    Passmore, H.C.5
  • 23
    • 0031931071 scopus 로고    scopus 로고
    • The role of gene conversion in determining sequence variation and divergence in the Est-5 gene family in Drosophila pseudoobscura
    • King, L. M. 1998. The role of gene conversion in determining sequence variation and divergence in the Est-5 gene family in Drosophila pseudoobscura. Genetics 148:305-315.
    • (1998) Genetics , vol.148 , pp. 305-315
    • King, L.M.1
  • 24
    • 0029775620 scopus 로고    scopus 로고
    • Meiosis: How could it work?
    • Kleckner, N. 1996. Meiosis: how could it work? Proc. Natl. Acad. Sci. USA 93:8167-8174.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 8167-8174
    • Kleckner, N.1
  • 25
    • 0030944607 scopus 로고    scopus 로고
    • PCR-based assay to determine nuclear matrix association
    • Kramer, J. A., and S. A. Krawetz. 1997. PCR-based assay to determine nuclear matrix association. BioTechniques 22:826-828.
    • (1997) BioTechniques , vol.22 , pp. 826-828
    • Kramer, J.A.1    Krawetz, S.A.2
  • 26
    • 0018850985 scopus 로고
    • A simple, rapid, and sensitive DNA assay procedure
    • Labarca, C., and K. Paigen. 1980. A simple, rapid, and sensitive DNA assay procedure. Anal. Biochem. 102:344-352.
    • (1980) Anal. Biochem. , vol.102 , pp. 344-352
    • Labarca, C.1    Paigen, K.2
  • 27
    • 0002907949 scopus 로고
    • The interaction of selection and linkage. I. General considerations; heterotic models
    • Lewontin, R. C. 1964. The interaction of selection and linkage. I. General considerations; heterotic models. Genetics 49:49-67.
    • (1964) Genetics , vol.49 , pp. 49-67
    • Lewontin, R.C.1
  • 28
    • 0029938821 scopus 로고    scopus 로고
    • The viruses in all of us: Characteristics and biological significance of human endogenous retrovirus sequences
    • Lower, R., J. Lower, and R. Kurth. 1996. The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences. Proc. Natl. Acad. Sci. USA 93:5177-5184.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 5177-5184
    • Lower, R.1    Lower, J.2    Kurth, R.3
  • 29
    • 0033835474 scopus 로고    scopus 로고
    • GT repeats are associated with recombination on human chromosome 22
    • Majewski, J., and J. Ott. 2000. GT repeats are associated with recombination on human chromosome 22. Genome Res. 10:1108-1114.
    • (2000) Genome Res. , vol.10 , pp. 1108-1114
    • Majewski, J.1    Ott, J.2
  • 30
    • 0037442741 scopus 로고    scopus 로고
    • Positional mapping of specific DNA sequences relative to the nuclear substructure by direct polymerase chain reaction on nuclear matrix-bound templates
    • Maya-Mendoza, A., and A. Aranda-Anzaldo. 2003. Positional mapping of specific DNA sequences relative to the nuclear substructure by direct polymerase chain reaction on nuclear matrix-bound templates. Anal. Biochem. 313:196-207.
    • (2003) Anal. Biochem. , vol.313 , pp. 196-207
    • Maya-Mendoza, A.1    Aranda-Anzaldo, A.2
  • 31
    • 0021675784 scopus 로고
    • Organization of the higher-order chromatin loop: Specific DNA attachment sites on nuclear scaffold
    • Mirkovitch, J., M. E. Mirault, and U. K. Laemmli. 1984. Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold. Cell 39:223-232.
    • (1984) Cell , vol.39 , pp. 223-232
    • Mirkovitch, J.1    Mirault, M.E.2    Laemmli, U.K.3
  • 32
    • 0030188305 scopus 로고    scopus 로고
    • Molecular analysis of a recombination hotspot adjacent to Lmp2 gene in the mouse MHC: Fine location and chromatin structure
    • Mizuno, K., T. Koide, T. Sagai, K. Moriwaki, and T. Shiroishi. 1996. Molecular analysis of a recombination hotspot adjacent to Lmp2 gene in the mouse MHC: fine location and chromatin structure. Mamm. Genome 7:490-496.
    • (1996) Mamm. Genome , vol.7 , pp. 490-496
    • Mizuno, K.1    Koide, T.2    Sagai, T.3    Moriwaki, K.4    Shiroishi, T.5
  • 33
    • 0034507639 scopus 로고    scopus 로고
    • Complex trait analysis in the mouse: The strengths, the limitations and the promise yet to come
    • Moore, K. J., and D. L. Nagle. 2000. Complex trait analysis in the mouse: the strengths, the limitations and the promise yet to come. Annu. Rev. Genet. 34:653-686.
    • (2000) Annu. Rev. Genet. , vol.34 , pp. 653-686
    • Moore, K.J.1    Nagle, D.L.2
  • 34
    • 0031938820 scopus 로고    scopus 로고
    • Relationship between transcription and initiation of meiotic recombination: Toward chromatin accessibility
    • Nicolas, A. 1998. Relationship between transcription and initiation of meiotic recombination: toward chromatin accessibility. Proc. Natl. Acad. Sci. USA 95:87-89.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 87-89
    • Nicolas, A.1
  • 35
    • 0023877158 scopus 로고
    • DNA repair synthesis in mouse spermatogenesis involves DNA polymerase beta activity
    • Orlando, P., R. Geremia, C. Frusciante, B. Tedeschi, and P. Grippo. 1988. DNA repair synthesis in mouse spermatogenesis involves DNA polymerase beta activity. Cell Differ. 23:221-230.
    • (1988) Cell Differ. , vol.23 , pp. 221-230
    • Orlando, P.1    Geremia, R.2    Frusciante, C.3    Tedeschi, B.4    Grippo, P.5
  • 36
    • 0035345013 scopus 로고    scopus 로고
    • Meiotic recombination hot spots and cold spots
    • Petes, T. D. 2001. Meiotic recombination hot spots and cold spots. Nat. Rev. Genet. 2:360-369.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 360-369
    • Petes, T.D.1
  • 38
    • 0028580121 scopus 로고
    • Identification and sequence characterization of a 1.3 kb EcoRI repeat fragment that harbors a DNA repair site of rat pachytene spermatocytes
    • Ramachandra, L., and M. R. Rao. 1994. Identification and sequence characterization of a 1.3 kb EcoRI repeat fragment that harbors a DNA repair site of rat pachytene spermatocytes. Chromosoma 103:486-501.
    • (1994) Chromosoma , vol.103 , pp. 486-501
    • Ramachandra, L.1    Rao, M.R.2
  • 39
    • 0029962292 scopus 로고    scopus 로고
    • A recombination hotspot responsible for two inherited peripheral neuropathies is located near a mariner transposon-like element
    • Reiter, L. T., T. Murakami, T. Koeuth, L. Pentao, D. M. Munzy, R. A. Gibbs, and J. R. Lupski. 1996. A recombination hotspot responsible for two inherited peripheral neuropathies is located near a mariner transposon-like element. Nat. Genet. 12:288-297.
    • (1996) Nat. Genet. , vol.12 , pp. 288-297
    • Reiter, L.T.1    Murakami, T.2    Koeuth, T.3    Pentao, L.4    Munzy, D.M.5    Gibbs, R.A.6    Lupski, J.R.7
  • 40
    • 0028116053 scopus 로고
    • Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila
    • Rozas, J., and M. Aguade. 1994. Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila. Proc. Natl. Acad. Sci. USA 91:11517-11521.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 11517-11521
    • Rozas, J.1    Aguade, M.2
  • 41
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • Rozas, J., and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 42
    • 0003252192 scopus 로고    scopus 로고
    • Bacteriophage λ vectors
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • Sambrook, J., and D. W. Russel. 2000. Bacteriophage λ vectors, p. 6.4-6.11. In Molecular cloning, vol 1. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • (2000) Molecular Cloning , vol.1
    • Sambrook, J.1    Russel, D.W.2
  • 45
    • 0032531815 scopus 로고    scopus 로고
    • Does SINE evolution preclude Alu function?
    • Schmid, C. W. 1998. Does SINE evolution preclude Alu function? Nucleic Acids Res. 26:4541-4550.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4541-4550
    • Schmid, C.W.1
  • 46
    • 0027346423 scopus 로고
    • Hotspots of meiotic recombination in the mouse major histocompatibility complex
    • Shiroishi, T., T. Sagai, and K. Moriwaki. 1993. Hotspots of meiotic recombination in the mouse major histocompatibility complex. Genetica 88:187-196.
    • (1993) Genetica , vol.88 , pp. 187-196
    • Shiroishi, T.1    Sagai, T.2    Moriwaki, K.3
  • 47
    • 0023411465 scopus 로고
    • Ultrastructural and biochemical comparisons of nuclear matrices prepared by high salt or LIS extraction
    • Smith, H. C., R. L. Ochs, D. Lin, and A. C. Chinault. 1987. Ultrastructural and biochemical comparisons of nuclear matrices prepared by high salt or LIS extraction. Mol. Cell. Biochem. 77:49-61.
    • (1987) Mol. Cell. Biochem. , vol.77 , pp. 49-61
    • Smith, H.C.1    Ochs, R.L.2    Lin, D.3    Chinault, A.C.4
  • 48
    • 0037123632 scopus 로고    scopus 로고
    • An expanding universe of noncoding RNAs
    • Storz, G. 2002. An expanding universe of noncoding RNAs. Science 296:1260-1263.
    • (2002) Science , vol.296 , pp. 1260-1263
    • Storz, G.1
  • 49
    • 0344441428 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • Stumpf, M. P., and G. A. McVean. 2003. Estimating recombination rates from population genetic data. Nat. Rev. Genet. 4:959-968.
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 959-968
    • Stumpf, M.P.1    McVean, G.A.2
  • 50
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 52
    • 0142104045 scopus 로고    scopus 로고
    • Analysis of the mouse transcriptome based on functional annotation of 60,770 full length cDNAs
    • The Fantom Consortium and the RIKEN Genome Exploration Research Group. 2002. Analysis of the mouse transcriptome based on functional annotation of 60,770 full length cDNAs. Nature 420:563-573.
    • (2002) Nature , vol.420 , pp. 563-573
  • 53
    • 0031455416 scopus 로고    scopus 로고
    • The preference for GT-rich DNA by the yeast Rad51 protein defines a set of universal pairing sequences
    • Tracy, R. B., J. K. Baumohl, and S. C. Kowalczykowski. 1997. The preference for GT-rich DNA by the yeast Rad51 protein defines a set of universal pairing sequences. Genes Dev. 11:3423-3431.
    • (1997) Genes Dev. , vol.11 , pp. 3423-3431
    • Tracy, R.B.1    Baumohl, J.K.2    Kowalczykowski, S.C.3
  • 54
    • 0025190946 scopus 로고
    • Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells
    • Wahls, W. P., L. J. Wallace, and P. D. Moore. 1990. Hypervariable minisatellite DNA is a hotspot for homologous recombination in human cells. Cell 60:95-103.
    • (1990) Cell , vol.60 , pp. 95-103
    • Wahls, W.P.1    Wallace, L.J.2    Moore, P.D.3
  • 55
    • 0346101497 scopus 로고    scopus 로고
    • Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates
    • Wall, J. D., L. A. Frisse, R. R. Hudson, and A. Di Rienzo. 2003. Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates. Am. J. Hum. Genet. 73:1330-1340.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 1330-1340
    • Wall, J.D.1    Frisse, L.A.2    Hudson, R.R.3    Di Rienzo, A.4
  • 56
    • 0037451351 scopus 로고    scopus 로고
    • High-resolution sperm typing of meiotic recombination in the mouse MHC Eβ gene
    • Yauk, C. L., P. R. Bois, and A. J. Jeffreys. 2003. High-resolution sperm typing of meiotic recombination in the mouse MHC Eβ gene. EMBO J. 22:1389-1397.
    • (2003) EMBO J. , vol.22 , pp. 1389-1397
    • Yauk, C.L.1    Bois, P.R.2    Jeffreys, A.J.3
  • 57
    • 0026090523 scopus 로고
    • Structural and genetic properties of the Eb recombination hotspot in the mouse
    • Zimmerer, E. J., and H. C. Passmore. 1991. Structural and genetic properties of the Eb recombination hotspot in the mouse. Immunogenetics 33:132-140.
    • (1991) Immunogenetics , vol.33 , pp. 132-140
    • Zimmerer, E.J.1    Passmore, H.C.2


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