메뉴 건너뛰기




Volumn 271, Issue 1, 2004, Pages 109-118

cis-Regulatory control circuits in development

Author keywords

cis Regulatory module; Feedback loop; Gene regulatory network; Repression

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 2942517813     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ydbio.2004.03.031     Document Type: Review
Times cited : (97)

References (41)
  • 1
    • 0037956844 scopus 로고    scopus 로고
    • Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks
    • Amore G., Yavrouian R.G., Peterson K.J., Ransick A., McClay D.R., Davidson E.H. Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks. Dev. Biol. 261:2003;55-81
    • (2003) Dev. Biol. , vol.261 , pp. 55-81
    • Amore, G.1    Yavrouian, R.G.2    Peterson, K.J.3    Ransick, A.4    McClay, D.R.5    Davidson, E.H.6
  • 2
    • 0036848430 scopus 로고    scopus 로고
    • Anterior repression of a Drosophila stripe enhancer requires three position-specific mechanisms
    • Andrioli L.P.M., Vasisht V., Theodosopoulou E., Oberstein A., Small S. Anterior repression of a Drosophila stripe enhancer requires three position-specific mechanisms. Development. 129:2002;4931-4940
    • (2002) Development , vol.129 , pp. 4931-4940
    • Andrioli, L.P.M.1    Vasisht, V.2    Theodosopoulou, E.3    Oberstein, A.4    Small, S.5
  • 3
    • 0030986188 scopus 로고    scopus 로고
    • The hardwiring of development: Organization and function of genomic regulatory systems
    • Arnone M.I., Davidson E.H. The hardwiring of development: organization and function of genomic regulatory systems. Development. 124:1997;1851-1864
    • (1997) Development , vol.124 , pp. 1851-1864
    • Arnone, M.I.1    Davidson, E.H.2
  • 4
    • 0030030902 scopus 로고    scopus 로고
    • The eve stripe 2 enhancer employs multiple modes of transcriptional synergy
    • Arnosti D.N., Barolo S., Levine M., Small S. The eve stripe 2 enhancer employs multiple modes of transcriptional synergy. Development. 122:1996;205-214
    • (1996) Development , vol.122 , pp. 205-214
    • Arnosti, D.N.1    Barolo, S.2    Levine, M.3    Small, S.4
  • 5
    • 0034066361 scopus 로고    scopus 로고
    • Roles of Hoxa1 and Hoxa2 in patterning the early hindbrain of the mouse
    • Barrow J.R., Stadler H.S., Capecchi M.R. Roles of Hoxa1 and Hoxa2 in patterning the early hindbrain of the mouse. Development. 127:2000;933-944
    • (2000) Development , vol.127 , pp. 933-944
    • Barrow, J.R.1    Stadler, H.S.2    Capecchi, M.R.3
  • 6
    • 0036901602 scopus 로고    scopus 로고
    • Modeling transcriptional regulatory networks
    • Bolouri H., Davidson E.H. Modeling transcriptional regulatory networks. BioEssays. 24:2002;1118-1129
    • (2002) BioEssays , vol.24 , pp. 1118-1129
    • Bolouri, H.1    Davidson, E.H.2
  • 7
    • 0036607524 scopus 로고    scopus 로고
    • Modeling DNA sequence-based cis-regulatory gene networks
    • Bolouri H., Davidson E.H. Modeling DNA sequence-based cis-regulatory gene networks. Dev. Biol. 246:2002;2-13
    • (2002) Dev. Biol. , vol.246 , pp. 2-13
    • Bolouri, H.1    Davidson, E.H.2
  • 9
    • 0031697442 scopus 로고    scopus 로고
    • Specification of cell fate in the sea urchin embryo: Summary and some proposed mechanisms
    • Davidson E.H., Cameron R.A., Ransick A. Specification of cell fate in the sea urchin embryo: summary and some proposed mechanisms. Development. 125:1998;3269-3290
    • (1998) Development , vol.125 , pp. 3269-3290
    • Davidson, E.H.1    Cameron, R.A.2    Ransick, A.3
  • 12
    • 0037452576 scopus 로고    scopus 로고
    • Regulatory gene networks and the properties of the developmental process
    • Davidson E.H., McClay D.R., Hood L. Regulatory gene networks and the properties of the developmental process. Proc. Natl. Acad. Sci. U. S. A. 100:2003;1475-1480
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 1475-1480
    • Davidson, E.H.1    McClay, D.R.2    Hood, L.3
  • 13
    • 0036342146 scopus 로고    scopus 로고
    • The last common bilaterian ancestor
    • Erwin D.H., Davidson E.H. The last common bilaterian ancestor. Development. 129:2002;3021-3032
    • (2002) Development , vol.129 , pp. 3021-3032
    • Erwin, D.H.1    Davidson, E.H.2
  • 14
    • 0023441546 scopus 로고
    • Complementary patterns of even-skipped and fushi-tarazu expression involve their differential regulation by a common set of segmentation genes in Drosophila
    • Frasch M., Levine M. Complementary patterns of even-skipped and fushi-tarazu expression involve their differential regulation by a common set of segmentation genes in Drosophila. Genes Dev. 1:1987;981-995
    • (1987) Genes Dev. , vol.1 , pp. 981-995
    • Frasch, M.1    Levine, M.2
  • 15
    • 0033037862 scopus 로고    scopus 로고
    • Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients
    • Fujioka M., Emi-Sarker Y., Yusibova G.L., Goto T., Jaynes J.B. Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients. Development. 126:1999;2527-2538
    • (1999) Development , vol.126 , pp. 2527-2538
    • Fujioka, M.1    Emi-Sarker, Y.2    Yusibova, G.L.3    Goto, T.4    Jaynes, J.B.5
  • 16
    • 0032526161 scopus 로고    scopus 로고
    • The GATA-factor elt-2 is essential for formation of the Caenorhabditis elegans intestine
    • Fukushige T., Hawkins M.G., McGhee J.D. The GATA-factor elt-2 is essential for formation of the Caenorhabditis elegans intestine. Dev. Biol. 198:1998;286-302
    • (1998) Dev. Biol. , vol.198 , pp. 286-302
    • Fukushige, T.1    Hawkins, M.G.2    McGhee, J.D.3
  • 17
    • 0036468361 scopus 로고    scopus 로고
    • Regulation of organogenesis by the Caenorhabditis elegans, FoxA protein PHA-41
    • Gaudet J., Mango S.E. Regulation of organogenesis by the Caenorhabditis elegans, FoxA protein PHA-41. Science. 295:2002;821-825
    • (2002) Science , vol.295 , pp. 821-825
    • Gaudet, J.1    Mango, S.E.2
  • 18
    • 0029895168 scopus 로고    scopus 로고
    • Transcriptional repression in development
    • Gray S., Levine M. Transcriptional repression in development. Curr. Opin. Cell Biol. 8:1996;358-364
    • (1996) Curr. Opin. Cell Biol. , vol.8 , pp. 358-364
    • Gray, S.1    Levine, M.2
  • 19
    • 0027745771 scopus 로고
    • Community effects and related phenomena in development
    • Gurdon J.B., Lemaire P., Kato K. Community effects and related phenomena in development. Cell. 75:1993;831-834
    • (1993) Cell , vol.75 , pp. 831-834
    • Gurdon, J.B.1    Lemaire, P.2    Kato, K.3
  • 20
    • 0024655056 scopus 로고
    • Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila
    • Harding K., Hoey T., Warrior R., Levine M. Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila. EMBO J. 8:1989;1205-1212
    • (1989) EMBO J. , vol.8 , pp. 1205-1212
    • Harding, K.1    Hoey, T.2    Warrior, R.3    Levine, M.4
  • 21
    • 0027511507 scopus 로고
    • Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen
    • Jiang J., Levine M. Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen. Cell. 72:1993;741-752
    • (1993) Cell , vol.72 , pp. 741-752
    • Jiang, J.1    Levine, M.2
  • 22
    • 0022878133 scopus 로고
    • Isolation, structure, and expression of even-skipped - A 2nd pair-rule gene of Drosophila containing a homeo box
    • Macdonald P.M., Ingham P., Struhl G. Isolation, structure, and expression of even-skipped - A 2nd pair-rule gene of Drosophila containing a homeo box. Cell. 47:1986;721-734
    • (1986) Cell , vol.47 , pp. 721-734
    • MacDonald, P.M.1    Ingham, P.2    Struhl, G.3
  • 23
    • 0036608026 scopus 로고    scopus 로고
    • Making worm guts: The gene regulatory network of the Caenorhabditis elegans endoderm
    • Maduro M.F., Rothman J.H. Making worm guts: the gene regulatory network of the Caenorhabditis elegans endoderm. Dev. Biol. 246:2002;68-85
    • (2002) Dev. Biol. , vol.246 , pp. 68-85
    • Maduro, M.F.1    Rothman, J.H.2
  • 24
    • 0035891328 scopus 로고    scopus 로고
    • Coordination of ges-1 expression between the Caenorhabditis pharynx and intestine
    • Marshall S.D.G., McGhee J.D. Coordination of ges-1 expression between the Caenorhabditis pharynx and intestine. Dev. Biol. 239:2001;350-363
    • (2001) Dev. Biol. , vol.239 , pp. 350-363
    • Marshall, S.D.G.1    McGhee, J.D.2
  • 25
    • 0033522802 scopus 로고    scopus 로고
    • Development - Genetic control of branching morphogenesis
    • Metzger R.J., Krasnow M.A. Development - Genetic control of branching morphogenesis. Science. 284:1999;1635-1639
    • (1999) Science , vol.284 , pp. 1635-1639
    • Metzger, R.J.1    Krasnow, M.A.2
  • 26
    • 0036607107 scopus 로고    scopus 로고
    • A regulatory gene network that directs micromere specification in the sea urchin embryo
    • Oliveri P., Carrick D.M., Davidson E.H. A regulatory gene network that directs micromere specification in the sea urchin embryo. Dev. Biol. 246:2002;209-228
    • (2002) Dev. Biol. , vol.246 , pp. 209-228
    • Oliveri, P.1    Carrick, D.M.2    Davidson, E.H.3
  • 27
    • 0038022709 scopus 로고    scopus 로고
    • Activation of pmar1 controls specification of micromeres in the sea urchin embryo
    • Oliveri P., Davidson E.H., McClay D.R. Activation of pmar1 controls specification of micromeres in the sea urchin embryo. Dev. Biol. 258:2003;32-43
    • (2003) Dev. Biol. , vol.258 , pp. 32-43
    • Oliveri, P.1    Davidson, E.H.2    McClay, D.R.3
  • 28
    • 0032008552 scopus 로고    scopus 로고
    • Late specification of veg(1) lineages to endodermal fate in the sea urchin embryo
    • Ransick A., Davidson E.H. Late specification of veg(1) lineages to endodermal fate in the sea urchin embryo. Dev. Biol. 195:1998;38-48
    • (1998) Dev. Biol. , vol.195 , pp. 38-48
    • Ransick, A.1    Davidson, E.H.2
  • 29
    • 0036607585 scopus 로고    scopus 로고
    • New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization
    • Ransick A., Rast J.P., Minokawa T., Calestani C., Davidson E.H. New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization. Dev. Biol. 246:2002;132-147
    • (2002) Dev. Biol. , vol.246 , pp. 132-147
    • Ransick, A.1    Rast, J.P.2    Minokawa, T.3    Calestani, C.4    Davidson, E.H.5
  • 30
    • 0036608031 scopus 로고    scopus 로고
    • Brachyury target genes in the early sea urchin embryo isolated by differential macroarray screening
    • Rast J.P., Cameron R.A., Poustka A.J., Davidson E.H. Brachyury target genes in the early sea urchin embryo isolated by differential macroarray screening. Dev. Biol. 246:2002;191-208
    • (2002) Dev. Biol. , vol.246 , pp. 191-208
    • Rast, J.P.1    Cameron, R.A.2    Poustka, A.J.3    Davidson, E.H.4
  • 31
    • 0026744792 scopus 로고
    • Regulation of even-skipped stripe-2 in the Drosophila embryo
    • Small S., Blair A., Levine M. Regulation of even-skipped stripe-2 in the Drosophila embryo. EMBO J. 11:1992;4047-4057
    • (1992) EMBO J. , vol.11 , pp. 4047-4057
    • Small, S.1    Blair, A.2    Levine, M.3
  • 32
    • 0030013231 scopus 로고    scopus 로고
    • Regulation of two pair-rule stripes by a single enhancer in the Drosophila embryo
    • Small S., Blair A., Levine M. Regulation of two pair-rule stripes by a single enhancer in the Drosophila embryo. Dev. Biol. 175:1996;314-324
    • (1996) Dev. Biol. , vol.175 , pp. 314-324
    • Small, S.1    Blair, A.2    Levine, M.3
  • 33
    • 0026355632 scopus 로고
    • Regulation of a segmentation stripe by overlapping activators and repressors in the Drosophila embryo
    • Stanojevic D., Small S., Levine M. Regulation of a segmentation stripe by overlapping activators and repressors in the Drosophila embryo. Science. 254:1991;1385-1387
    • (1991) Science , vol.254 , pp. 1385-1387
    • Stanojevic, D.1    Small, S.2    Levine, M.3
  • 34
    • 0036607116 scopus 로고    scopus 로고
    • Dorsal gradient networks in the Drosophila embryo
    • Stathopoulos A., Levine M. Dorsal gradient networks in the Drosophila embryo. Dev. Biol. 246:2002;57-67
    • (2002) Dev. Biol. , vol.246 , pp. 57-67
    • Stathopoulos, A.1    Levine, M.2
  • 35
    • 0029863315 scopus 로고    scopus 로고
    • Modular cis-regulatory organization of Endo16, a gut-specific gene of the sea urchin embryo
    • Yuh C.H., Davidson E.H. Modular cis-regulatory organization of Endo16, a gut-specific gene of the sea urchin embryo. Development. 122:1996;1069-1082
    • (1996) Development , vol.122 , pp. 1069-1082
    • Yuh, C.H.1    Davidson, E.H.2
  • 36
    • 0028168075 scopus 로고
    • Complexity and organization of DNA-protein interactions in the 5′-regulatory region of an endoderm-specific marker gene in the sea-urchin embryo
    • Yuh C.H., Ransick A., Martinez P., Britten R.J., Davidson E.H. Complexity and organization of DNA-protein interactions in the 5′-regulatory region of an endoderm-specific marker gene in the sea-urchin embryo. Mech. Dev. 47:1994;165-186
    • (1994) Mech. Dev. , vol.47 , pp. 165-186
    • Yuh, C.H.1    Ransick, A.2    Martinez, P.3    Britten, R.J.4    Davidson, E.H.5
  • 37
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
    • Yuh C.H., Bolouri H., Davidson E.H. Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene. Science. 279:1998;1896-1902
    • (1998) Science , vol.279 , pp. 1896-1902
    • Yuh, C.H.1    Bolouri, H.2    Davidson, E.H.3
  • 38
    • 0035094449 scopus 로고    scopus 로고
    • Cis-regulatory logic in the endo16 gene: Switching from a specification to a differentiation mode of control
    • Yuh C.H., Bolouri H., Davidson E.H. Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control. Development. 128:2001;617-629
    • (2001) Development , vol.128 , pp. 617-629
    • Yuh, C.H.1    Bolouri, H.2    Davidson, E.H.3
  • 39
    • 0029084030 scopus 로고
    • Developmental utilization of Spp3a1 and Spp3a2-2 proteins which recognize the same DNA target site in several sea-urchin gene regulatory regions
    • Zeller R.W., Britten R.J., Davidson E.H. Developmental utilization of Spp3a1 and Spp3a2-2 proteins which recognize the same DNA target site in several sea-urchin gene regulatory regions. Dev. Biol. 170:1995;75-82
    • (1995) Dev. Biol. , vol.170 , pp. 75-82
    • Zeller, R.W.1    Britten, R.J.2    Davidson, E.H.3
  • 40
    • 0034016527 scopus 로고    scopus 로고
    • Cell fate choices in Drosophila tracheal morphogenesis
    • Zelzer E., Shilo B.Z. Cell fate choices in Drosophila tracheal morphogenesis. BioEssays. 22:2000;219-226
    • (2000) BioEssays , vol.22 , pp. 219-226
    • Zelzer, E.1    Shilo, B.Z.2
  • 41
    • 0030815265 scopus 로고    scopus 로고
    • End-1 encodes an apparent GATA factor that specifies the endoderm precursor in Caenorhabditis elegans embryos
    • Zhu J.W., Hill R.J., Heid P.J., Fukuyama M., Sugimoto A., Priess J.R., Rothman J.H. End-1 encodes an apparent GATA factor that specifies the endoderm precursor in Caenorhabditis elegans embryos. Genes Dev. 11:1997;2883-2896
    • (1997) Genes Dev. , vol.11 , pp. 2883-2896
    • Zhu, J.W.1    Hill, R.J.2    Heid, P.J.3    Fukuyama, M.4    Sugimoto, A.5    Priess, J.R.6    Rothman, J.H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.