Coupe du Roi bisection of proteins. Spontaneous tetramerization of two peptides that span the sequence of the rabbit uteroglobin monomer

Journal of the American Chemical Society

Volumn 127, Issue 50, 2005, Pages 17719-17733

  Nicolas, Ernesto ^a   Ferrer, Cristina ^b   Taboada, Lorena ^c   Giralt, Ernest ^a  

^a UNIVERSITY OF BARCELONA   (Spain)

^b Infar SA   (Spain)

^c Division of Network   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENCE; MONOMERS; PH EFFECTS; SEDIMENTATION; SPECTROSCOPIC ANALYSIS; SYNTHESIS (CHEMICAL);

FLUORESCENT SPECTROSCOPY; MONOMERIC PEPTIDES; TETRAMERIZATION; UTEROGLOBIN MONOMER;

PROTEINS;

PEPTIDE; PHOSPHATE; UTEROGLOBIN;

AMINO ACID SEQUENCE; ARTICLE; FLUORESCENCE SPECTROSCOPY; OXIDATION; PH; SEDIMENTATION; SYNTHESIS; ULTRACENTRIFUGATION;

AMINO ACID SEQUENCE; ANIMALS; CIRCULAR DICHROISM; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PEPTIDE FRAGMENTS; PROTEIN STRUCTURE, TERTIARY; RABBITS; SPECTROMETRY, FLUORESCENCE; ULTRACENTRIFUGATION; UTEROGLOBIN;

EID: 29344454438     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0539793     Document Type: Article

References (119)

1. In the context of chemistry, two molecules are considered isometric if their labeled graphs are the same, i.e., if the atoms and their connectivity (bonds) are the same. See refs 2 and 3, and references therein.
2. Anet, F. A. L.; Miura, S. S.; Siegel, J.; Mislow, K. J. Am. Chem. Soc. 1983, 105, 1419-1426.
3. Geneste, F.; Moradpour, A.; Dive, G.; Peelers, D.; Malthete, J.; Sadoc, J.-F. J. Org. Chem. 2002, 67, 605-607.
4. Cinquini, M.; Cozzi, F.; Sannicolo, F.; Sironi, A. J. Am. Chem. Soc. 1988, 110, 4363-4364.
5. Glaser, R. Chirality 1993, 5, 272-276.
6. (a) Mukherjee, A. B., Chilton, B. S., Eds. The Uteroglobin/Clara Cell Protein Family; The New York Academy of Sciences: New York, 2000; Vol. 923, p 358.
7. (b) Miele, L.; Cordella-Miele, E.; Mantile. G.; Peri, A.; Mukherjee, A. B. J. Endocrinol. Invest. 1994, 17, 679-692.
8. (c) Mukherjee. A. B.; Kundu, G. C.; Mantile-Selvaggi, G.; Yuan, C. J.; Mandai, A. K.; Chattopadhyay, S.; Zheng, F.; Pattabiraman, N.; Zhang, Z. Cell. Mol. Life Sci. 1999, 55, 771-787.
9. Klug, J.; Beier, H. M.; Bernard, A.; Chilton, B. S.; Fleming, T. P.; Lehrer, R. I.; Miele, L.; Pattabiraman, N.; Singh, G. Ann. N.Y. Acad. Sci. 2000, 923, 348-354.
10. (a) Halatek, T.; Hermans, C.; Broeckaert, F.; Wattiez, R.; Wiedig, M.; Toubeau, G.; Falmagne, P.; Bernard, A. Eur. Respir. J. 1998, 11, 726-733.
11. (b) Aoki, A.; Pasolli, H. A.; Raida, M.; Meyer, M.; Schulz-Knappe, P.; Mostafavi, H.; Schepky, A. G.; Znottka, R.; Elia, J.; Hock, D.; Beier, H. M.; Forssmann, W. G. Mol. Hum. Reprod. 1996, 2, 489-497.
12. (c) Bernard, A.; Roels, H.; Lauwerys, R.; Witters, R.; Gielens, C.; Soumillion, A.; Van Damme, J.; De Ley, M. Clin. Chim. Acta 1992, 207, 239-249.
13. (d) Kikukawa, T.; Mukherjee, A. B. Mol. Cell. Endocrinol. 1989, 62, 177-187.
14. (e) Shijubo, N.; Kawabata, I.; Sato, N.; Itoh, Y. Curr. Pharm. Des. 2003, 9, 1139-1149.
15. (f) Jackson, P. J.; Turner, R.; Keen, J. N.; Brooksbank, R. A.; Cooper, E. H. J. Chromatogr. 1988, 452, 359-367.
16. (a) Beier, H. M. Biochim. Biophys. Acta 1968, 160, 289-291.
17. (b) Krishnan, R. S.; Daniel, J. C., Jr. Science 1967, 158, 490-492.
18. (a) Miele, L.; Cordella-Miele, E.; Mukherjee, A. B. Endocr. Rev. 1987, 8, 474-490.
19. (b) Singh, G.; Katyal, S. L. Ann. N.Y. Acad. Sci. 2000, 923. 43-58.
20. (a) Mukherjee, A. B.; Cordella-Miele, E.; Kikukawa, T.; Miele, L. Adv. Exp. Med. Biol. 1988, 231, 135-152.
21. (b) Mukherjee, A. B.; Ulane, R. E.; Agrawal, A. K. Am. J. Reprod. Immunol. 1982, 2, 135-141.
22. (c) Mukherjee, D. C.; Agrawal, A. K.; Manjunath, R.; Mukherjee, A. B. Science 1983. 219, 989-991.
23. (a) Lesur, O.; Bernard, A.; Arsalane, K.; Lauwerys, R.; Begin, R.; Cantin, A.; Lane, D. Am. J. Respir. Crit. Care Med. 1995, 152, 290-297.
24. (b) Levin, S. W.; Butler, J. D.; Schumacher, U. K.; Wightman, P. D.; Mukherjee, A. B. Life Sci. 1986, 38, 1813-1819.
25. (c) Mantile, G.; Miele, L.; Cordella-Miele, E.; Singh, G.; Katyal, S. L.; Mukherjee, A. B. J. Biol. Chem. 1993, 268, 20343-20351.
26. (d) Miele, L.; Cordella-Miele, E.; Mukherjee, A. B. J. Biol. Chem. 1990, 265, 6427-6435.
27. (a) Chang, A.; Ramsay, P.; Zhao, B.; Park, M.; Magdaleno, S.; Reardon, M. J.; Welly, S.; Demayo, F. J. Ann. N.Y. Acad. Sci. 2000, 923, 181-192.
28. (b) Dierynck, I.; Bernard, A.; Roels, H.; De Ley, M. Am. J. Respir. Cell Mol. Biol. 1995, 12, 205-210.
29. (c) Ramsay, P. L.; Luo, Z.; Magdaleno, S. M.; Whitbourne, S. K.; Cao, X.; Park, M. S.; Welty, S. E.; Yu-Lee, L. Y.; DeMayo, F. J. Am. J. Physiol. 2003, 284, L108-L118.
30. (a) Zhang, Z.; Kundu, G. C.; Yuan, C. J.; Ward, J. M.; Lee, E. J.; DeMayo, F.; Westphal, H.; Mukherjee, A. B. Science 1997, 276, 1408-1412.
31. (b) Zheng, F.; Kundu, G. C.; Zhang, Z.; Ward, J.; DeMayo, F.; Mukherjee, A. B. Nat. Med. 1999, 5, 1018-1025.
32. (a) Szabo, E.; Goheer, A.; Witschi, H.; Linnoila, R. I. Cell Growth Differ. 1998, 9, 475-485.
33. (b) Leyton, J.; Manyak, M. J.; Mukherjee, A. B.; Miele, L.; Mantile, G.; Patierno, S. R. Cancer Res. 1994, 54, 3696-3699.
34. (a) Kundu, G. C.; Mandai, A. K.; Zhang, Z.; Mantile-Selvaggi, G.; Mukherjee, A. B. J. Biol. Chem. 1998, 273, 22819-22824.
35. (b) Kundu, G. C.; Mantile, G.; Miele, L.; Cordella-Miele, E.; Mukherjee, A. B. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 2915-2919.
36. (c) Zhang, Z.; Kundu, G. C.; Panda, D.; Mandal, A. K.; Mantile-Selvasgi, G.; Peri, A.; Yuan, C. J.; Mukherjee, A. B. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 3963-3968.
37. Diaz Gonzalez, K.; Nieto, A. FEBS Lett. 1995, 361, 255-258.
38. Umland, T. C.; Swaminathan, S.; Singh, G.; Warty, V.; Furey, W.; Pletcher, J.; Sax, M. Nat. Struct. Biol. 1994, 1, 538-545.
39. (a) Beato, M. J. Steroid Biochem. 1976, 7, 327-334.
40. (b) Singh, G.; Katyal, S. L.; Brown, W. E.; Kennedy, A. L. Exp. Lung Res. 1993, 19, 67-75.
41. Lopez de Haro, M. S.; Perez Martinez, M.; Garcia, C.; Nieto, A. FEBS Lett. 1994, 349, 249-251.
42. Barnes, H. J.; Nordlund-Moller, L.; Nord, M.; Gustafsson, J.; Lund, J.; Gillner, M. J. Mol. Biol. 1996, 256, 392-404.
43. (a) Andersson, O.; Nordlund-Moller, L.; Barnes, H. J.; Lund, J. J. Biol. Chem. 1994, 269, 19081-19087.
44. (b) Andersson, O.; Nordlund-Moller, L.; Bronnegard, M.; Sirzea, F.; Ripe, E.; Lund, J. Am. J. Respir. Cell Mol. Biol. 1991, 5, 6-12.
45. (e) Gillner, M.; Lund, J.; Cambillau, C.; Alexandersson, M.; Hurtig, U.; Bergman, A.; Klasson-Wehler, E.; Gustafsson, J. A. J. Steroid Biochem. 1988, 31, 27-33.
46. (d) Stripp, B. R.; Lund, J.; Mango, G. W.; Doyen, K. C.; Johnston, C.; Hultenby, K.; Nord, M.; Whitsett, J. A. Am. J. Physiol. 1996, 271, L656-L664.
47. Stripp, B. R.; Maxson, K.; Mera, R.; Singh, G. Am. J. Physiol. 1995, 269, L791-L799.
48. Elia, J.; Aoki, A.; Maldonado Cristina, A. Histochem. Cell Biol. 2003, 120, 33-39.
49. (a) Bally, R.; Delettre, J. J. Mol Biol. 1989, 206, 153-170.
50. (b) Mornon, J. P.; Fridlansky, F.; Bally, R.; Milgrom, E. J. Mol. Biol. 1980, 137, 415-429.
51. Winkelmann, R.; Geschwindner, S.; Haun, M.; Ruterjans, H. Eur. J. Biochem. 1998, 258, 521-532.
52. Lin, S. L.; Tsai, C. J.; Nussinov, R. J. Mol. Biol. 1995, 248, 151-161.
53. Ni, J.; Kalff-Suske, M.; Gentz, R.; Schageman, J.; Beato, M.; Klug, J. Ann. N.Y. Acad. Sci. 2000, 923, 25-42.
54. Chowdhury, B.; Mantile-Selvaggi, G.; Miele, L.; Cordella-Miele, E.; Zhang, Z.; Mukherjee, A. B. Biocliem. Biophys. Res. Commun. 2002, 295, 877-883.
55. Callebaut, I.; Poupon, A.; Bally, R.; Demaret, J.-P.; Housset, D.; Delettre, J.; Hossenlopp, P.; Mornon, J.-P. In The Uteroglobin/Clara Cell Protein Family; Mukherjee, A. B., Chilton, B. S., Eds.; The New York Academy of Sciences: New York, 2000; Vol. 923, pp 90-112.
56. (a) Ullmann, A.; Jacob, F.; Monod. J. J. Mol. Biol. 1967, 24, 339-343.
57. (b) Kato, I.; Anfmsen, C. B. J. Biol. Chem. 1969, 244, 1004-1007.
58. (a) Bertolaet, B. L.; Knowles, J. R. Biochemistry 1995, 34, 5736-5743.
59. (b) Ladurner, A. G.; Itzhaki, L. S.; Gray, G. P.; Fersht, A. R. J. Mol. Biol. 1997, 273, 317-329.
60. (c) de Prat Gay, G.; Ruiz-Sanz, J.; Fersht, A. R. Biochemistry 1994, 33, 7957-7963.
61. Tasayco, M. L.; Carey, J. Science 1992, 255, 594-597.
62. (e) Shiba, K.; Schimmel, P. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 1880-1884.
63. (f) Yu, H.; Kono, M.; McKee, T. D.; Oprian, D. D. Biochemistry 1995, 34, 14963-14969.
64. Pilon, A. L. Ann. N. Y. Acad. Sci. 2000, 923, 280-299.
65. Mantile, G.; Fuchs, C.; Cordella-Miele, E.; Peri, A.; Mukherjee, A. B.; Miele, L. Bintechnol. Prog. 2000, 16, 17-25.
66. (a) Improta, S.; Pastore, A.; Mammi, S.; Peggion, E. Biopolymers 1994, 34, 773-782.
67. (b) Mammi, S.; Foffani, M. T.; Improta, S.; Tessari, M.; Schievano, E.; Peggion, E. Biopolymers 1992, 32, 341-346.
68. Moreno, J. J. Ann. N.Y. Acad. Sci 2000, 923, 147-153.
69. Nicolas, E.; Bacardit, J.; Ferrer, T.; Cirait, E. Lett. Pept. Sci 1996, 2, 353-362.
70. Ferrer, T.; Nicolas, E.; Girait, E. Lett. Pept. Sci. 1999, 6, 165-172.
71. Merrifield, R. B. J. Am. Chem. Soc. 1963, 85, 2149-2154.
72. Lloyd-Williams, P.; Albericio, F.; Giralt, E. Chemical Approaches to the Synthesis of Peptides and Proteins; CRC Press: Boca Raton, 1997; p 297.
73. Breipohl, G.; Knolle, J.; Geiger, R. Tetrahedron Lett. 1987, 28, 5647-5650.
74. Albericio, F.; Kneib-Cordonier, N.; Biancalana, S.; Gera, L.; Masada, R. I.; Hudson, D.; Barany, G. J. Org. Chem. 1990, 55, 3730-3743.
75. Vilaseca, M.; Nicolas, E.; Capdevila, F.; Giralt, E. Tetrahedron 1998, 54, 15273-15286.
76. Beck, W.; Jung, G. Lett. Pept. Sci. 1994, 1, 31-37.
77. Taboada, L.; Nicolas, E.; Giralt, E. Tetrahedron Lett. 2001, 42, 1891-1893.
78. Albericio, F.; Barany, G. Int. J. Pept. Protein Res. 1985, 26, 92-97.
79. Tam, J. P.; Heath, W. F.; Merrifield, R. B. J. Am. Chem. Soc. 1983, 105, 6442-6455.
80. Sanyal, G.; Marquis-Omer, D.; Waxman, L.; Mach, H.; Ryan, J. A.; O'Brien Gress, J.; Middaugh, C. R. Biochim. Biophys. Acta 1995, 1249, 100-108.
81. Andreu, D.; Albericio, F.; Sole, N. A.; Munson, M. C.; Ferrer, M.; Barany, G. Methods Mol. Biol. 1994, 35, 91-169.
82. Matsueda, G. R.; Stewart, J. M. Peptides 1981, 2, 45-50.
83. Tam, J. P.; Merrifield, R. B. In Peptides; Udenfriend, S., Meienhofer, J., Eds.; Academic Press: New York. 1987; Vol. 9, pp 185-248.
84. Carlomagno, T.; Mantile, G.; Bazzo, R.; Miele, L.; Paolillo, L.; Mukherjee, A. B.; Barbato, G. J. Biomol. NMR 1997, 9, 35-46.
85. Pace, C. N. Crit. Rev. Biochem. 1975, 3, 1-43.
86. (a) Hard, T.; Barnes, H. J.; Larsson, C.; Gustafsson, J. A.; Lund, J. Nat. Struct. Biol. 1995, 2, 983-989.
87. (b) Peter, W.; Dunkel, R.; Stouten, P. F.; Vriend, G.; Beato, M.; Suske, G. Protein Eng. 1992, 5, 351 -359.
88. (c) Beato, M.; Arnemann, J.; Voss, H. J. J. Steroid Biochem. 1977, 8, 725-730.
89. (d) Beato, M.; Baier, R. Biochim. Biophys. Acta 1975, 392, 346-356.
90. Yon, J. M. Cell. Mol. Life Sci. 1997, 53, 557-567.
91. Roder, H.; Shastry, M. R. Curr. Opin. Struct. Biol. 1999, 9, 620-626.
92. Wedemeyer, W. J.; Welker, E.; Narayan, M.; Scheraga, H. A. Biochemistry 2000, 39, 4207-4216.
93. (a) Cole, J. L.; Hansen, J. C. J. Biomol. Tech. 1999, 10, 163-176.
94. (b) Lebowitz, J.; Lewis, M. S.; Schuck, P. Protein Sci. 2002, 11, 2067-2079.
95. (c) Rivas, G.; Stafford, W.; Minton, A. P. Methods 1999, 19, 194-212.
96. Laue, T. M.; Stafford, W. F., III. Annu. Rev. Biophys. Biomol. Struct. 1999, 28, 75-100.
97. Temussi, P. A.; Tancredi, T.; Puigdomenech, P.; Saavedra, A.; Beato, M. Biochemistry 1980, 19, 3287-3293.
98. Fridlansky, F.; Milgrom, E. Endocrinology 1976, 99, 1244-1251.
99. Weber, G.; Laurence, D. J. R. Process Biochem. 1954, 56, xxxi.
100. (a) Brand, L.; Gohlke, J. R. Annu. Rev. Biochem. 1972, 41, 843-868.
101. (b) Edelman, G. M.; McClure, W. O. Acc. Chem. Res. 1968, 1, 65-70.
102. (C) McClure, W. O.; Edelman, G. M. Biochemistry 1966, 5, 1908-1919.
103. Morize, I.; Surcouf, E.; Vaney, M. C.; Epelboin, Y.; Buehner, M.; Fridlansky, F.; Milgrom, E.; Mornon, J. P. J. Mol. Biol. 1987, 194, 725-739.
104. Beato, M.; Saavedra, A.; Puigdomenech, P.; Tancredi, T.; Temussi, P. A. Dev. Endocrinol. 1980, 8, 105-119.
105. Pattabiraman, N.; Matthews, J. H.; Ward, K. B.; Vaggi, G. M.-S.; Miele, L.; Mukherjee, A. B. Ann. N. Y. Acad. Sci. 2000, 923, 113-127.
106. Nieto, A.; Ponstingl, H.; Beato, M. Arch. Biochem. Biophys. 1977, 180, 82-92.
107. Turner, D. C.; Brand, L. Biochemistry 1968, 7, 3381-3390.
108. (a) Karukstis, K. K.; Krekel, D. A.; Weinberger, D. A.; Bittker, R. A.; Naito, N. R.; Bloch, S. H. J. Phys. Chem. 1995, 99, 449-453.
109. (b) Kosower, E. M. Acc. Chem. Res. 1982, 15, 259-266.
110. (a) Dunkel, R.; Vriend, G.; Beato, M.; Suske, G. Protein Eng. 1995, 8, 71-79.
111. (b) Peter, W.; Bruller, H. J.; Vriend, G.; Beato, M.; Suske, G. J. Steroid Biochem. Mol. Biol. 1991, 38, 27-33.
112. Forster, T. Ann. Phys. 1948, 2, 55-75.
113. Kaiser, E.; Colescott, R. L.; Bossinger, C. D.; Cook, P. I. Anal. Biochem. 1970, 34, 595-598.
114. Christensen, T. Acta Chem. Scand. B 1979, B33, 763-766.
115. Ma, Y.; Sonveaux, E. Biopolymers 1989, 28, 965-973.
116. Yang, J. T.; Wu, C. S.; Martinez, H. M. In Methods Enzymol. 1986, 130, 208-269.
117. Johnson, M. L.; Correia, J. J.; Yphantis, D. A.; Halvorson, H. R. Biophys. J. 1981, 36, 575-588.
118. Tsai, J.; Taylor, R.; Chothia, C.; Gerstein, M. J. Mol. Biol. 1999, 290, 253-266.
119. McRorie, D. K.; Voelker, P. J. Self-Associating Systems in the Analytical Ultracentrifugue; Publication 362784; Beckman Instruments, Inc.: Fullerton, CA, 1993.