The process chain for peptidomic biomarker discovery

Disease Markers

Volumn 22, Issue 1-2, 2006, Pages 27-37

  Schrader, Michael ^a,b   Selle, Hartmut ^b  

^a UNIVERSITY OF APPLIED SCIENCES WEIHENSTEPHAN TRIESDORF   (Germany)

^b BioVisioN AG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMYLOID BETA PROTEIN; BIOLOGICAL MARKER; BRAIN NATRIURETIC PEPTIDE; C PEPTIDE; GASTRIN; INSULIN; OLIGOPEPTIDE; OSTEOCALCIN; PEPTIDE; POLYPEPTIDE; PROCALCITONIN; PROINSULIN;

ADAPTATION; ALZHEIMER DISEASE; AMINO TERMINAL SEQUENCE; ARTICLE; CARDIOVASCULAR DISEASE; DIABETES MELLITUS; DIAGNOSTIC ACCURACY; DIAGNOSTIC APPROACH ROUTE; DIAGNOSTIC PROCEDURE; DIARRHEA; EXTRACELLULAR MATRIX; EXTRACELLULAR SPACE; HUMAN; OSTEOPOROSIS; PEPTIDE ANALYSIS; PHYSICAL CHEMISTRY; PRIORITY JOURNAL; PROCESS DEVELOPMENT; PROTEIN DEGRADATION; PROTEIN METABOLISM; PROTEOMICS; QUANTITATIVE ANALYSIS; SENSITIVITY ANALYSIS; SEPSIS; STATISTICAL SIGNIFICANCE; TECHNOLOGY; TWO DIMENSIONAL GEL ELECTROPHORESIS; ULCER; VALIDATION PROCESS;

EID: 29244487150     PISSN: 02780240     EISSN: None     Source Type: Journal    
DOI: 10.1155/2006/174849     Document Type: Article

References (60)

1. B.L. Adam, Y. Qu, J.W. Davis et al., Cancer Res 62 (2002), 3609-3614.
2. R. Aebersold and M. Mann, Nature 422 (2003), 198-207.
3. N.L. Anderson and N.G. Anderson, Electrophoresis 19 (1998), 1853-1861.
4. N.L. Anderson, N.G. Anderson, L.R. Haines, D.B. Hardie, R.W. Olafson and T.W. Pearson, J Proteome Res 3 (2004), 235-244.
5. G. Baggerman, P. Verleyen, E. Clynen, J. Huybrechts, A. De Loof and L. Schoofs, J Chromatogr B Analyt Technol Biomed Life Sci 803 (2004), 3-16.
6. R. Bischoff and T.M. Luider, J Chromatogr B Analyt Technol Biomed Life Sci 803 (2004), 27-40.
7. K. Blennow and H. Hampel, Lancet Neurol 2 (2003), 605-613.
8. G.A. Carr, Clin Pharmacol Ther 69 (2001), 89-95.
9. O. Carrette, I. Demalte, A. Scherl et al., Proteomics 3 (2003), 1486-1494.
10. P. Chaurand, S.A. Schwartz and R.M. Caprioli, Anal Chem 76 (2004), 87A-93A.
11. E. Clynen, G. Baggerman, D. Veelaert et al., Eur J Biochem 268 (2001), 1929-1939.
12. E. Clynen, A. De Loof and L. Schoofs, Gen Comp Endocrinol 132 (2003), 1-9.
13. W.A. Colburn, J Clin Pharmacol 43 (2003), 329-341.
14. K. Cottingham, Anal Chem 75 (2003), 472A-476A.
15. R.E. Dalbey and D.S. Sigman, The enzymes. Vol.22: Co-and posttranslational proteolysis of proteins, Academic Press, San Diego, 2002.
16. E.P. Diamandis, Clin Chem 49 (2003), 1272-1275.
17. N.S: Doherty, B.H. Littman, K. Reilly, A.C. Swindell, J.M. Buss and N.L. Anderson, Electrophoresis 19 (1998), 355-363.
18. C. Fierens, L.M. Thienpont, D. Stockl, E. Willekens and A.P. De Leenheer, J Chromatogr A896 (2000), 275-278.
19. J. Gobom, K.O. Kraeuter, R. Persson, H. Steen, P. Roepstorff and R. Ekman, Anal Chem 72 (2000), 3320-3326.
20. S.P. Gygi, Y. Rochon, B.R. Franza and R. Aebersold, R. Mol Cell Biol 19 (1999), 1720-1730.
21. G. Heine, H.-D. Zucht, M.U. Schuhmann et al., J Chromatogr B Analyt Technol Biomed Life Sci 782 (2002), 353-361.
22. V.Y.H. Hook, Proteolytic and Cellular Mechanism in Prohormone and Proprotein Processing, R.G. Landes Company: Austin, Texas, 1998.
23. S.E. Ilyin, S.M. Belkowski and C.R. Plata-Salaman, Trends Biotechnol 22 (2004), 411-416.
24. IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN), Eur J Biochem 138 (1984), 9-37.
25. H. John, M. Walden, S. Schafer, S. Genz and W.G. Forssmann, Anal Bioanal Chem 378 (2004), 883-897.
26. J. Karl, A. Borgya, A Gallusser at al., Scand J Clin Lab Invest Suppl 230 (1999), 177-181.
27. N.L. Kelleher, Anal Chem 76 (2004), 197A-203A.
28. S. Kennedy, Biomarkers 7 (2002), 269-290.
29. J. Lamerz, H. Selle, L. Scapozza et al., Correlation-Associated Peptide Networks of Human Cerebrospinal Fluid, Proteomics 5 (2005), 2789-2798.
30. J. Lamerz, R. Crameri, L. Scapozza, T. Mohring, H. Selle and H.-D. Zucht, Peptide Sequence Prediction Supported by Correlation-Associated Networks in Human Cerebrospinal Fluid, submitted for publication, 2005.
31. N. Lundell, J Chromatogr 639 (1993), 97-115.
32. D. Machin, M.J. Campbell, P.M. Fayers and A.P.Y. Pinol, Sample Size Tables for Clinical Studies, second edition, Blackwell Science, London, 1997.
33. P.A. McCullough, T. Omlandand A.S. Maisel, Rev Cardiovasc Med 4 (2003), 72-80.
34. G.L. Miklos and R. Maleszka, Proteomics 1 (2001), 30-41.
35. T. Mohring, M. Kellmann, M. Jurgens and M. Schrader, J Mass Spectrom 40 (2005), 214-226.
36. C.L. Nilsson, A. Brinkmalm, L. Minthon, K. Blennow and R. Ekman, Peptides 22 (2001), 2105-2112.
37. C.A. Owen and E.J. Campbell, J Lab Clin Med 134 (1999), 341-351.
38. E.F. Petricoin, A.M. Ardekani, B.A. Hitt et al., Lancet 359 (2002), 572-577.
39. M. Ramstrom and J. Bergquist, FEBS Lett 567 (2004), 92-95.
40. J.F. Rehfeld and J.P. Goetze, Curr Mol Med 3 (2003), 25-38.
41. R. Richter, P. Schulz-Knappe, M. Schrader et al., J Chromatogr B Biomed Sci Appl 726 (1999), 25-35.
42. P. Roepstorff, Curr Opin Biotechnol 8 (1997), 6-13.
43. C. Rohlff, Electrophoresis 21 (2000), 1227-1234.
44. D.G. Rudmann and S.K. Durham, Toxicol Pathol 27 (1999), 111-114.
45. M. Schrader and P. Schulz-Knappe, Trends Biotechnol 19 (2001), S55-S60.
46. P. Schulz-Knappe, M. Raida, M. Meyer, E.A. Quellhorst and W.G. Forssmann, Eur J Med Res 1 (1996), 223-236.
47. P. Schulz-Knappe, H.D. Zucht, G. Heine, M. Jurgens, R. Hess and M. Schrader, Comb Chem High Throughput Screen 4 (2001), 207-217.
48. H. Selle, J. Lamerz, K. Buerger et al., Identification of Novel Biomarker Candidates by Differential Peptidomics Analysis of Cerebrospinal Fluid in Alzheimer's Disease, Combin. Chem. & High Throughput Screen, 2005, accepted for publication.
49. N. Sewald and H.-D. Jakubke, Peptides: Chemistry and Biology, 1st Reprint 2003 ed., Wiley-VCH Verlag GmbH: Weinheim, 2002.
50. D.E. Shapiro, Stat Methods Med Res 8 (1999), 113-134.
51. M. Stark, O. Danielsson, W.J. Griffiths, H. Jornvall and J. Johansson, J Chromatogr B Biomed Sci Appl 754 (2001), 357-367.
52. R. Strohman, Nat Biotechnol 21 (2003), 477-479.
53. M. Svensson, K. Skold, P. Svenningsson and P.E. Andren, J Proteome Res 2 (2003), 213-219.
54. C. Tilstone, Nature 424 (2003), 610-612.
55. K.A. Tubbs, D. Nedelkov and R.W. Nelson, Anal Biochem 289 (2001), 26-35.
56. P. Vicini, M.R. Gastonguay and D.M. Foster, Crit Rev Biomed Eng 30 (2002), 379-418.
57. W. Wang, H. Zhou, H. Lin et al., Anal Chem 75 (2003), 4818-4826.
58. J. Whicher, J. Bienvenu and G. Monneret, Ann Clin Biochem 38 (2001), 483-493.
59. R. Zhang, L. Barker, D. Pinchev et al., Proteomics 4 (2004), 244-256.
60. J.W. Zolg and H. Langen, Mol Cell Proteomics 3 (2004), 345-354.