Low genetic diversity and significant population structuring in the relict Amentotaxus argotaenia complex (Taxaceae) based on ISSR fingerprinting

Journal of Plant Research

Volumn 118, Issue 6, 2005, Pages 415-422

  Ge, Xue Jun ^a   Zhou, Xian Long ^b   Li, Zhong Chao ^b   Hsu, Tsai Wen ^c   Schaal, Barbara A ^d   Chiang, Tzen Yuh ^e  

^a SUN YAT SEN UNIVERSITY   (China)

^b SOUTH CHINA INSTITUTE OF BOTANY   (China)

^c ENDEMIC SPECIES RESEARCH INSTITUTE   (Taiwan)

^d WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

A. formosana; A. yunnanensis; Amentotaxus argotaenia; Genetic diversity; ISSR fingerprinting; Population structuring; Species complex

Indexed keywords

ARTICLE; CLASSIFICATION; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; PHYLOGENY; TAXACEAE; VARIABLE NUMBER OF TANDEM REPEAT;

MINISATELLITE REPEATS; PHYLOGENY; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; TAXACEAE;

AMENTOTAXUS; AMENTOTAXUS ARGOTAENIA; AMENTOTAXUS FORMOSANA; AMENTOTAXUS YUNNANENSIS; TAXACEAE;

EID: 29244464801     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10265-005-0235-1     Document Type: Article

References (55)

1. Ash GJ, Raman R, Crump NS (2003) An investigation of genetic variation in Carthamus lanatus in New South Wales, Australia, using intersimple sequence repeats (ISSR) analysis. Weed Res 43:208-213
2. Axelrod DI, Al-Shehbaz I, Raven PH (1998) History of the modern flora of China. In: Zhang AL, Wu SG (eds) Floristic characteristics and diversity of East Asian plants. China Higher Education Press/Springer, Beijing/Berlin Heidelberg New York, pp 43-55
3. Bauert MR, Kalin M, Baltisberger M, Edwards PJ (1998) No genetic variation detected within isolated relict populations of Saxifraga cernua in the Alps using RAPD markers. Mol Ecol 7:1519-1527
4. Cheng WC (1978) The genus Amentotaxus. Flora Reipublicae Popularis Sinicae, vol 7. Science Press, Beijing
5. Chiang TY, Hong KH, Peng CI (2001) Experimental hybridization reveals biased inheritance of the internal transcribed spacer of the nuclear ribosomal DNA in Begonia x taipeiensis. J Plant Res 114:343-351
6. Chiang YC, Schaal BA, Chou CH, Huang S, Chiang TY (2003) Contrasting selection modes at the Adh 1 1 locus in outcrossing Miscanthus sinensis vs inbreeding Miscanthus condensatus (Poaceae). Am J Bot 90:561-570
7. Comes HP, Kadereit JW (1998) The effect of Quaternary climatic changes on plant distribution and evolution. Trends Plant Sci 3:432-438
8. Culley TM, Wolfe AD (2001) Population genetic structure of the cleistogamous plant species Viola pubescens Aiton (Violaceae), as indicated by allozyme and ISSR molecular markers. Heredity 86:545-556
9. Doyle J (1991) DNA protocols for plants - CTAB total DNA isolation. In: Hewitt GM, Johnston A (eds) Molecular techniques in taxonomy. Springer, Berlin Heidelberg New York, pp 283-293
10. Dyer RJ, Sork VL (2001) Pollen pool heterogeneity in shortleaf pine, Pinus echinata Mill. Mol Ecol 10:859-866
11. Farjon A (2001) World checklist and bibliography of conifers, 2nd edn. The Royal Botanic Gardens Press, Kew, England
12. Felsenstein J (1993) PHYLIP, Phylogenetic inference package, version 3.5.7. A computer program distributed by the author, http://evolution.genetics. washington.edu/phylip.html. Department of genetics, University of Washington, Seattle
13. Ferguson DK, Jahnichen H, Alvin KL (1978) Amentotaxus Pilger from the European tertiary. Feddes Rep 89:379-410
14. Fontaine C, Lovett PN, Sanou H, Maley J, Bouvet J-M (2004) Genetic diversity of the shea tree (Vitellaria paradoxa C.F. Gaertn), detected by RAPD and chloroplast microsatellite markers. Heredity 93:639-648
15. Frankel OH, Soulé ME (1981) Conservation and evolution. Cambridge University Press, Cambridge
16. Frankham R, Ballou JD, Briscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge
17. Gadek PA, Alpers DL, Heslewood MM, Quinn CJ (2000) Relationships within Cupressaceae sensu lato: a combined morphological and molecular approach. Am J Bot 87:1044-1057
18. Ge S, Hong DY, Wang HQ, Liu ZY, Zhang CM (1998) Population genetic structure and conservation of an endangered conifer, Cathaya argyrophylla (Pinaceae). Int J Plant Sci 159:351-357
19. Ge XJ, Yu Y, Zhao NX, Chen HS, Qi WQ (2003) Genetic variation in the endangered inner Mongolia endemic shrub Tetraena mongolica Maxim. (Zygophyllaceae). Biol Conserv 111:427-434
20. Ge XJ, Yu Y, Yuan YM, Huang HW, Yang C (2005) Genetic diversity and geographic differentiation in endangered Ammopiptanthus (Leguminosae) populations in desert regions of Northwest China as revealed by ISSR analysis. Ann Bot 95:843-851
21. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding and genetic resources. Sinauer Associates, Sunderland, MA, pp 43-63
22. Hamrick JL, Godt MJW (1996) Conservation genetics of endemic plant species. In: Avise JC, Hamrick JL (eds) Conservation genetics: case histories from nature. Chapman and Hall, New York, pp 281-304
23. Hamrick JL, Godt MJW, Murawski DA, Loveless MD (1991) Correlations between species and allozyme diversity: implications for conservation biology. In: Falk DA, Holsinger KE (eds) Genetics and conservation of rare plants. Oxford University Press, New York, pp 75-86
24. Hartl DL, Clark AG (1997) Principles of population genetics, 3rd edn. Sinauer, Sunderland, MA
25. Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58:247-276
26. Holsinger KE, Lewis PO, Dey DK (2002) A Bayesian approach to inferring population structure from dominant markers. Mol Ecol 11:1157-1164
27. Karron JD (1991) Patterns of genetic variation and breeding systems in rare plants. In: Falk DA, Holsinger KE (eds) Genetics and conservation of rare plants. Oxford University Press, New York, pp 87-98
28. Lewontin RC (1972) The apportionment of human diversity. Evol Biol 6:381-398
29. Lin TP, Lee TY, Yang LF, Chung YL, Yang JC (1994) Comparison of the allozyme diversity in several populations of Chamaecyparis formosensis and Chamaecyparis taiwanensis. Can J Forest Res 24:2128-2134
30. Lu SY, Peng CI, Cheng YP, Hong KH, Chiang TY (2001) Chloroplast DNA phylogeography of Cunninghamia konishii (Cupressaceae), an endemic conifer of Taiwan. Genome 44:797-807
31. Maki M (2003) Population genetics of threatened wild plants in Japan. J Plant Res 116:169-174
32. Miller CN Jr (1977) Mesozoic conifers. Bot Rev 43:217-280
33. Miller MP (1997) Tools for population genetic analysis (TFPGA), version 1.3. Department of Biological Sciences, Northern Arizona University, AZ
34. Nei M (1972) Genetic distance between populations. Am Nat 106:282-292
35. Nichols RA, Hewitt GM (1994) The genetic consequences of long distance dispersal during colonization. Heredity 72:312-317
36. Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13:1143-1155
37. Nybom H, Bartish IV (2000) Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspect Plant Ecol Evol Syst 3(2):93-114
38. Page CN (1990) Cupressaceae. In: Kubitzky K (eds) The families and genera of vascular plants vol. 1. Springer, Berlin Heidelberg New York, pp 302-316
39. Royer DL, Hickey LJ, Wing SL (2003) Ecological conservatism in the "living fossil" Ginkgo. Paleobiology 29:84-104
40. Schneider S, Roessli D, Excoffier L (2000) Arlequin ver 2.000: a software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva
41. Sibuet JC, Hsu SK (1997) Geodynamics of the Taiwan arc-arc collision. Tectonophysics 274:221-251
42. Sibuet JC, Hsu SK (2004) How was Taiwan created? Tectonophysics 279:159-181
43. Suzuki H, Tsuchiya K, Takezaki N (2000) A molecular phylogenetic framework for the Ryukyu endemic rodents Tokudaia osimensis and Diplothrix legata. Mol Phylogen Evol 15:15-24
44. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonization routes in Europe. Mol Ecol 7:453-464
45. Templeton AR, Routman E, Phillips CA (1995) Separating population structure from population history: a cladistic analysis the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140:767-782
46. Walter R, Epperson BK (2004) Microsatellite analysis of spatial structure among seedlings in populations of Pinus strobus (Pinaceae). Am J Bot 91:549-557
47. Wang WT (1992) On some distribution patterns and some migration routes found in the Eastern Asiatic region. Acta Phytotax Sin 30 1-24
48. Wang CT, Wang WT, Chiang CH, Wang YN, Lin TP (1996) Low genetic variation in Amentotaxus formosana Li revealed by isozyme analysis and random amplified polymorphic DNA markers. Heredity 77:388-395
49. Wang T, Su YJ, Li XY, Chen GP, Zeng QL (2004) Genetic structure and variation in the relict populations of Alsophila spinulosa from southern China based on RAPD markers and cpDNA atpB-rbcL sequence data. Hereditas 140:8-17
50. Xiao LQ, Ge XJ, Gong X, Hao G, Zhang SX (2004) ISSR variation in the endemic and endangered plant Cycas guizhouensis (Cycadaceae). Ann Bot 94:133-138
51. Xie GW, Wang SL, Yuan YM, Ge XJ (2005) Population genetic structure of Monimopetalum chinense (Celastraceae). Ann Bot 95:773-777
52. Yeh FC, Yang RC, Boyle T (1999) POPGENE. Microsoft windows-based freeware for population genetic analysis. Release 1.31. University of Alberta, Edmonton, AB
53. Zeng WB (1993) The passageway of the flora migration on both sides of the Taiwan Strait in Pleistocene epoch. Acta Bot Yunn 16:107-110
54. Zhou QX (2001) Studies on Systematics of Taxaceae. PhD Dissertation. Kunming Institute of Botany, Kunming, pp 1-133
55. Zietkiewicz E, Rafalski A, Labud D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183