Genetic structure and variation in the relict populations of Alsophila spinulosa from southern China based on RAPD markers and cpDNA atpB-rbcL sequence data

Hereditas

Volumn 140, Issue 1, 2004, Pages 8-17

  Wang, Ting ^a   Su, Ying Juan ^a   Li, Xue Yan ^a   Zheng, Bo ^a   Chen, Guo Pei ^a   Zeng, Qing Lu ^a  

^a SUN YAT SEN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CHLOROPLAST DNA; SPACER DNA; TYROSINE;

ALSOPHILA SPINULOSA; ARTICLE; CHINA; CONTROLLED STUDY; CORRELATION ANALYSIS; DNA BASE COMPOSITION; DNA EXTRACTION; DNA SEQUENCE; FERN; GENE IDENTIFICATION; GENE LOCUS; GENE STRUCTURE; GENETIC CODE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; MOLECULAR CLONING; NONHUMAN; PHENOTYPE; PHYLOGENY; POPULATION GENETIC STRUCTURE; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE ANALYSIS;

BASE COMPOSITION; BREEDING; CHINA; CLONING, MOLECULAR; CONSERVATION OF NATURAL RESOURCES; DNA, CHLOROPLAST; FERNS; GENETIC MARKERS; GENETICS, POPULATION; GEOGRAPHY; HAPLOTYPES; POLYMORPHISM, GENETIC; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

ALSOPHILA SPINULOSA; EMBRYOPHYTA; FILICOPHYTA; JIA; MOLVA MOLVA;

EID: 1842471007     PISSN: 00180661     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1601-5223.2004.01659.x     Document Type: Article

References (47)

1. Allnutt, T. R., Newton, A. C., Lara, A. et al. 1999. Genetic variation in Fitzroya cupressoides (alerce), a threatened South American conifer. - Mol. Ecol. 8: 975-987.
2. Butler, M. A., Templeton, A. R. and Read, B. 1994. DNA fingerprinting in Speke's gazelle: A test for genetic distinctiveness, and the correlation between relatedness and similarity. - Mol. Ecol. 3: 355-362.
3. Bauert, M. R., Kalin, M., Baltisberger, M. et al. 1998. No genetic variation detected within isolated relict populations of Saxifraga cernua in the Alps using RAPD markers. - Mol. Ecol. 7: 1519-1527.
4. Camacho, F. J. and Liston, A. 2001. Population structure and genetic diversity of Botrychium pumicola (Ophioglossaceae) based on inter-simple sequence repeats (ISSR). - Am. J. Bot. 88: 1065-1070.
5. Castelloe, J. and Templeton, A. R. 1994. Root probability for intraspecific gene trees under neutral coalescent theory. - Mol. Phylogenet. Evol. 3: 102-113.
6. Cheng, Z. Y., Tao, G. D. and Xu, Z. F. 1990. A study on the biological characteristics and the endangering factors of Alsophila spinulosa. - Acta Bot. Yunnanica 12: 186-190.
7. Chiang, T. Y., Chiang, Y. C., Chen, Y. J. et al. 2001. Phylogeography of Kandelia candel in east Asiatic mangroves based on nucleotide variation of chloroplast and mitochondrial DNAs. - Mol. Ecol. 10: 2697-2710.
8. Chiang, T. Y., Schaal, B. A. and Peng, C. I. 1998. Universal primers for amplification and sequencing a noncoding spacer between the atp B and rbc L genes of chloroplast DNA. - Bot. Bull. Acad. Sinica 39: 245-250.
9. Conant, D. S. 1990. Observations on the reproductive biology of Alsophila species and hybrids (Cyatheaceae). - Ann. Missouri Bot. Garden 77: 290-296.
10. Cosner, M. E. and Crawford, D. J. 1994. Comparisions of isozyme diversity in three rare species of Coreopsis (Asteraceae). - Syst. Bot. 19: 350-358.
11. Dawson, I. K., Chalmers, K. J., Waugh, R. et al. 1993. Detection and analysis of genetic variation in Hordeum spontaneum populations from Israel using RAPD markers. - Mol. Ecol. 2: 151-159.
12. Drummond, R. S. M., Keeling, D. J., Richardson, T. E. et al. 2000. Genetic analysis and conservation of 31 surviving individuals of a rare New Zealand tree, Metrosideros bartlettii (Myrtaceae). Mol. Ecol. 9: 1149-1157.
13. Ellstrand, N. C. and Elam, D. R. 1993. Population genetic consequences of small population size. Implications for plant conservation. - Annu. Rev. Ecol. Syst. 24: 217-242.
14. Excoffier, L. 1992. WinAMOVA version 1.55-analysis of molecular variance. Graphical windows 3.x program for the analysis of population genetic structure from molecular or conventional genetic data http://anthropologie.unige.ch/LGB/software/win/amova.
15. Excoffier, L. and Smouse, P. E. 1994. Using allele frequencies and geographic subvision to reconstruct gene trees with a species: Molecular variance parsimony. - Genetics 136: 343-359.
16. Felsenstein, J. 1995. PHYLIP (Phylogeny Inference Package) Version 3.57. Computer program, Univ. of Washington.
17. Ferris, C., King, R. A., Vainola, R. et al. 1998. Chloroplast DNA recognizes three refugia sources of European oaks and suggests independent eastern and western immigrations to Finland. - Heredity 80: 584-593.
18. Fu, L. G. 1991. The red list of Chinese plants. - Science Press, Beijing.
19. Hadrys, H., Balick, M. and Schierwater, B. 1992. Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. - Mol. Ecol. 1: 55-63.
20. Hall, T. A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. - Nucleic Acids Symposium Series 41: 95-98.
21. Hamrick, J. L., Godt, M. J. W., Murawski, D. A. et al. 1991. Correlations between species traits and allozyme diversity: Implication for conservation biology. - In: Falk, D. A. and Holsinger, K. E. (eds), Genetics and conservation of rare plants. Oxford Univ. Press, p. 75-86.
22. Huang, S., Chiang, Y. C., Schaal, B. A. et al. 2001. Organelle DNA phylogeography of Cycas taitungensis, a relict species in Taiwan. - Mol. Ecol. 10: 2669-2681.
23. Jaccard, P. 1908. Nouvelles reserches sur la distribution florale. - Bull. Soc. Vaudoise Sci. Nat. 44: 223-270.
24. Keiper, F. J. and McConchie, R. 2000. An analysis of genetic variation in natural populations of Sticherus flabellatus [R. Br. (St John)] using amplified fragment length polymorphism (AFLP) markers. - Mol. Ecol. 9: 571-581.
25. Korpelainen, H. 1995. Mating system and distribution of enzyme genetic variation in bracken (Pteridium aquilinum). - Can. J. Bot. 73: 1611-1617.
26. Lacerda, D. R., Acedo, M. D. P., Lemos Filho, J. P. et al. 2001. Genetic diversity and structure of natural populations of Plathymenia reticulata (Mimosoideae), a tropical tree from the Brazilian Cerrado. - Mol. Ecol. 10: 1143-1152.
27. Lewontin, R. C. 1973. The apportionment of human diversity. - Evol. Biol. 6: 381-398.
28. Loveless, M. D. and Hamrick, J. L. 1984. Ecological determinants of genetic structure in plant populations. Annu. Rev. Ecol. Syst. 15: 65-95.
29. Lu, S. Y., Hong, K. H., Liu, S. L. et al. 2002. Genetic variation and population differentiation of Michelia formosana (Magnoliaceae) based on cpDNA variation and RAPD fingerprints: Relevance to post-Pleistocene recolonization. - J. Plant Res. 115: 203-216.
30. Mosseler, A. J., Egger, K. N. and Innes, D. J. 1993. Life history and the loss of genetic diversity in red pine. - Am. J. Bot. 80: 240.
31. Nei, M. and Kumar, S. 2000. Molecular evolution and phylogenetics. - Oxford Univ. Press.
32. Pages, R. D. M. and Holmes, E. 1998. Molecular evolution, a phylogenetic approach. - Blackwell Science Ltd.
33. Palacios, C. and Gonzalez-Candelas, F. 1997. Analysis of population genetic structure and variability using RAPD markers in the endemic and endangered Limonium dufourii (Plumbaginaceae). - Mol. Ecol. 6: 1107-1121.
34. Pryvor, K. V., Young, J. E., Rumsey, F. J. et al. 2001. Diversity, genetic structure and evidence of outcrossing in British populations of the rock fern Adiantum capillus-veneris using microsatellites. - Mol. Ecol. 10: 1881-1894.
35. Rohlf, F. J. 1993. NTSYS: Numerical taxonomy and multivariate analysis system, version 1.8. Exeter Software, NY.
36. Roman, B., Rubiales, D., Torres, A. M. et al. 2001. Genetic diversity in Orobanche crenata populations from southern Spain. - Theoret. Appl. Genet. 103: 1108-1114.
37. Rosseto, M., Weaver, P. K. and Dixon, K. W. 1995. Use of RAPD analysis in devising conservation strategies for rare and endangered Grevillea scapigera (Proteaceae). - Mol. Ecol. 4: 321-329.
38. Schneller, J. and Holderegger, R. 1996. Genetic variation in small, isolated fern populations. - J. Veg. Sci. 7: 113-120.
39. Schneller, J., Holderegger, R., Gugerli, F. et al. 1998. Patterns of genetic variation detected by RAPDs suggest a single origin with subsequent mutations and long-distance dispersal in the apomictic fern Dryopteris remota (Dryopteridaceae). - Am. J. Bot. 85: 1038-1042.
40. Stewart, C. N., Jr. and Excoffier, L. 1996. Assesssing population genetic structure and variability with RAPD data: Application to Vaccinium macrocarpon (American cranberry). - J. Evol. Biol. 9: 153-171.
41. Su, Y. J., Wang, T., Yang, W. D. et al. 1998. DNA extraction and RAPD analysis of Podocarpus. - Acta Scientiarum Naturalium Universiyatis Sunyatseni 37: 13-18.
42. Thompson, J. D., Gibson, T. J., Plewniak, F. et al. 1997. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. - Nucleic Acids Res. 24: 4876-4882.
43. Tryon, A. F. and Lugardon, B. 1990. Spores of the Pteridophyta. - Springer-Verlag.
44. Tryon, R. M. 1970. The classification of Cyatheaceae. Contributions from the Gray Herbarium of Harvard Univ. 200: 3-53.
45. Wang, T., Su, Y. J., Zheng, B. et al. 2003. Phylogenetic analysis of the chloroplast trnL intron and trnL-trnF intergenic spacer sequences of the Cyatheaceae plants from China. - J. Tropical Subtropical Bot. 11: 137-142.
46. Xing, F. W., Wu, T. L., Li, Z. X. et al. 1995. Endemic plants of Hainan island. - J. Tropical Subtropical Bot. 3: 1-12.
47. Yeh, F. C. and Yang, R. 1999. POPGENE version 1.31. Dept of Renewable Resources, Univ. of Alberta http://www.ualberta.ca/~fyeh.