메뉴 건너뛰기




Volumn 6, Issue , 2005, Pages

Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS THALIANA; CDNA LIBRARIES; COMPOUND POISSON PROCESS; EXPRESSED GENES; EXPRESSED SEQUENCE TAGS; GENE CAPTURE; PREDICTION METHODS; SIMULATION STUDIES;

EID: 29244455325     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-300     Document Type: Article
Times cited : (25)

References (41)
  • 2
    • 10244276797 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A: CAP3: A DNA sequence assembly program. Genome Research 1999, 6:829-845.
    • (1999) Genome Research , vol.6 , pp. 829-845
    • Huang, X.1    Madan, A.2
  • 4
    • 0029355897 scopus 로고
    • ESTablishing a human transcript map
    • Boguski MS, Schuler GD: ESTablishing a human transcript map. Nature Genetics 1995, 10(4):369-71.
    • (1995) Nature Genetics , vol.10 , Issue.4 , pp. 369-371
    • Boguski, M.S.1    Schuler, G.D.2
  • 5
    • 0032703998 scopus 로고    scopus 로고
    • d2_cluster: A validated method for clustering EST and full-length cDNA sequences
    • Burke J, Davison D, Hide W: d2_cluster: A validated method for clustering EST and full-length cDNA sequences. Genome Research 1999, 9:1135-1142.
    • (1999) Genome Research , vol.9 , pp. 1135-1142
    • Burke, J.1    Davison, D.2    Hide, W.3
  • 7
  • 10
    • 0027216663 scopus 로고
    • 3,400 new expressed sequenced tags identify diversity of transcripts in human brain
    • Adams MD, Kerlavage AR, Fields C, Venter JC: 3,400 new expressed sequenced tags identify diversity of transcripts in human brain. Nature Genetics 1993, 4:256-267.
    • (1993) Nature Genetics , vol.4 , pp. 256-267
    • Adams, M.D.1    Kerlavage, A.R.2    Fields, C.3    Venter, J.C.4
  • 14
    • 0037606127 scopus 로고    scopus 로고
    • Generating consensus sequences from partial order multiple sequence alignment graphs
    • Lee C: Generating consensus sequences from partial order multiple sequence alignment graphs. Bioinformatics 2003, 19:999-1008.
    • (2003) Bioinformatics , vol.19 , pp. 999-1008
    • Lee, C.1
  • 16
    • 0036712421 scopus 로고    scopus 로고
    • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
    • Xu Q, Modrek B, Lee C: Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Nucleic Acids Research 2002, 30:3754-3766.
    • (2002) Nucleic Acids Research , vol.30 , pp. 3754-3766
    • Xu, Q.1    Modrek, B.2    Lee, C.3
  • 17
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • Modrek B, Lee C: A genomic view of alternative splicing. Nature Genetics 2002, 30:13-19.
    • (2002) Nature Genetics , vol.30 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 18
    • 0035393343 scopus 로고    scopus 로고
    • Genome-wide detection of alternative splicing in expressed sequences of human genes
    • Modrek B, Resch A, Grasso C, Lee C: Genome-wide detection of alternative splicing in expressed sequences of human genes. Nucleic Acids Research 2001, 29:2850-2859.
    • (2001) Nucleic Acids Research , vol.29 , pp. 2850-2859
    • Modrek, B.1    Resch, A.2    Grasso, C.3    Lee, C.4
  • 19
    • 0032837252 scopus 로고    scopus 로고
    • Computational methods for the identification of differential and coordinated gene expression
    • Audic S, Claverie JM: Computational methods for the identification of differential and coordinated gene expression. Human Molecular Genetics 1997, 8:1821-1832.
    • (1997) Human Molecular Genetics , vol.8 , pp. 1821-1832
    • Audic, S.1    Claverie, J.M.2
  • 20
    • 0034518635 scopus 로고    scopus 로고
    • The comparison of gene expression from multiple cDNA libraries
    • Stekel DJ, Git Y, Falciani F: The comparison of gene expression from multiple cDNA libraries. Genome Research 2000, 10:2055-2061.
    • (2000) Genome Research , vol.10 , pp. 2055-2061
    • Stekel, D.J.1    Git, Y.2    Falciani, F.3
  • 21
    • 5044247757 scopus 로고    scopus 로고
    • Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys
    • Susko E, Roger A: Estimating and comparing the rates of gene discovery and expressed sequence tag (EST) frequencies in EST surveys. Bioinformatics 2004, 20:2279-2287.
    • (2004) Bioinformatics , vol.20 , pp. 2279-2287
    • Susko, E.1    Roger, A.2
  • 23
    • 0034084035 scopus 로고    scopus 로고
    • Analysis of expressed sequence tap indicates 35,000 human genes
    • Ewing B, Green P: Analysis of expressed sequence tap indicates 35,000 human genes. Nature Genetics 2000, 25:232-233.
    • (2000) Nature Genetics , vol.25 , pp. 232-233
    • Ewing, B.1    Green, P.2
  • 25
    • 0035984046 scopus 로고    scopus 로고
    • Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing
    • Van der Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S: Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. The Plant Cell 2002, 14:1441-1456.
    • (2002) The Plant Cell , vol.14 , pp. 1441-1456
    • Van der Hoeven, R.1    Ronning, C.2    Giovannoni, J.3    Martin, G.4    Tanksley, S.5
  • 26
    • 0034649566 scopus 로고    scopus 로고
    • The Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 28
    • 0002631876 scopus 로고
    • The relation between the number of species and the number of individuals in a random sample of an animal population
    • Fisher RA, Corbet AS, Williams CB: The relation between the number of species and the number of individuals in a random sample of an animal population. Journal of Animal Ecology 1943, 12:42-58.
    • (1943) Journal of Animal Ecology , vol.12 , pp. 42-58
    • Fisher, R.A.1    Corbet, A.S.2    Williams, C.B.3
  • 29
    • 0017139943 scopus 로고
    • Estimating the number of unseen species: How many words did Shakespeare know?
    • Efron B, Thisted R: Estimating the number of unseen species: How many words did Shakespeare know? Biometrika 1976, 63:435-447.
    • (1976) Biometrika , vol.63 , pp. 435-447
    • Efron, B.1    Thisted, R.2
  • 30
    • 24644461134 scopus 로고    scopus 로고
    • A penalized nonparametric maximum likelihood approach to species richness estimation
    • Wang JPZ, Lindsay BG: A penalized nonparametric maximum likelihood approach to species richness estimation. Journal of American Statistical Association 2005, 100:942-959.
    • (2005) Journal of American Statistical Association , vol.100 , pp. 942-959
    • Wang, J.P.Z.1    Lindsay, B.G.2
  • 34
    • 0002348293 scopus 로고
    • The Number of New Species and the Increase in Population Coverage, When a Sample is Increased
    • Good IJ, Toulmin GH: The Number of New Species and the Increase in Population Coverage, When a Sample is Increased. Biometrika 1956, 43:45-63.
    • (1956) Biometrika , vol.43 , pp. 45-63
    • Good, I.J.1    Toulmin, G.H.2
  • 35
    • 84874665431 scopus 로고    scopus 로고
    • Egene
    • Egene [http://www.mathstat.dal.ca/~tsusko].
  • 36
    • 0034733243 scopus 로고    scopus 로고
    • A large scale analysis of cDNA in Arabidopsis thaliana: Generation of 12,028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries
    • Asamizu E, Nakamura Y, Sato S, Tabata S: A large scale analysis of cDNA in Arabidopsis thaliana: generation of 12,028 non-redundant expressed sequence tags from normalized and size-selected cDNA libraries. DNA Researrh 2000, 7:175-180.
    • (2000) DNA Researrh , vol.7 , pp. 175-180
    • Asamizu, E.1    Nakamura, Y.2    Sato, S.3    Tabata, S.4
  • 37
    • 0000284439 scopus 로고
    • Consistency of the Maximum Likelihood Estimator in the Presence of Infinitely Many Incidental Parameters
    • Kiefer J, Wolfowitz J: Consistency of the Maximum Likelihood Estimator in the Presence of Infinitely Many Incidental Parameters. The Annals of Mathematical Statistics 1956, 27:887-906.
    • (1956) The Annals of Mathematical Statistics , vol.27 , pp. 887-906
    • Kiefer, J.1    Wolfowitz, J.2
  • 38
    • 84988052077 scopus 로고
    • Nonparametric: Standard errors and confidence intervals
    • Efron B: Nonparametric: standard errors and confidence intervals. Canadian Journal of Statistics 1981, 9:139-172.
    • (1981) Canadian Journal of Statistics , vol.9 , pp. 139-172
    • Efron, B.1
  • 39
    • 0034387298 scopus 로고    scopus 로고
    • Estimating the number of shared species in two communities
    • Chao A, Huang WH, Chen YC, Kuo CY: Estimating the number of shared species in two communities. Statistica Sinica 2000, 10:227-246.
    • (2000) Statistica Sinica , vol.10 , pp. 227-246
    • Chao, A.1    Huang, W.H.2    Chen, Y.C.3    Kuo, C.Y.4
  • 40
    • 84874645870 scopus 로고    scopus 로고
    • ESTstat
    • ESTstat [http://www.floralgenome.org/ESTstat].
  • 41
    • 84874660842 scopus 로고    scopus 로고
    • Supplementray materials
    • Supplementray materials [http://bioinfo.stats.northwestern.edu/jzwang].


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.