Population and phylogenetic analysis of the cinnamoyl coA reductase gene in Eucalyptus globulus (Myrtaceae)

Australian Journal of Botany

Volumn 53, Issue 8, 2005, Pages 827-838

  McKinnon, Gay E ^a   Potts, Brad M ^a   Steane, Dorothy A ^a   Vaillancourt, René E ^a  

^a UNIVERSITY OF TASMANIA   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

GENE;

EUCALYPTUS; EUCALYPTUS GLOBULUS; EUCALYPTUS SALIGNA; MAIDENARIA; MYRTACEAE; SYMPHYOMYRTUS;

EID: 29144475818     PISSN: 00671924     EISSN: None     Source Type: Journal    
DOI: 10.1071/BT04195     Document Type: Article

References (45)

1. Abbott RJ, James JK, Milne RI, Gillies ACM (2003) Plant introductions, hybridization and gene flow. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 358, 1123-1132. doi: 10.1098/rstb.2003. 1289
2. Bradley RD, Hillis DM (1997) Recombinant DNA sequences generated by PCR amplification. Molecular Biology and Evolution 14, 592-593.
3. Brooker MIH (2000) A new classification of the genus Eucalyptus L'Her. (Myrtaceae). Australian Systematic Botany 13, 79-148. doi: 10.1071/SB98008
4. Caicedo AL, Schaal BA (2004) Population structure and phylogeography of Solanum pimpinellifolium inferred from a nuclear gene. Molecular Ecology 13, 1871-1882. doi: 10.1111/j.1365-294X.2004.02191.x
5. Crisp M, Cook L, Steane D (2004) Radiation of the Australian flora: what can comparisons of molecular phylogenies across multiple taxa tell us about the evolution of diversity in present-day communities? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 359, 1551-1571. doi: 10.1098/rstb.2004.1528
6. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12, 13-15.
7. Dutkowski GW, Potts BM (1999) Geographic patterns of genetic variation in Eucalyptus globulus ssp. globulus and a revised racial classification. Australian Journal of Botany 47, 237-263. doi: 10.1071/BT97114
8. Emshwiller E, Doyle JJ (1999) Chloroplast-expressed glutamine synthetase (ncpGS): potential utility for phylogenetic studies with an example from Oxalis (Oxalidaceae). Molecular Phylogenetics and Evolution 12, 310-319. doi: 10.1006/mpev.1999.0613
9. Freeman JS, Jackson HD, Steane DA, McKinnon GE, Dutkowski GW, Potts BM, Vaillancourt RE (2001) Chloroplast DNA phylogeography of Eucalyptus globulus. Australian Journal of Botany 49, 585-596. doi: 10.1071/BT00094
10. Griffin AR, Harbard JL, Centurion C, Santini P (2000) Breeding Eucalyptus grandis x globulus and other inter-specific hybrids with high inviability - problem analysis and experience with Shell Forestry projects in Uruguay and Chile. In 'Hybrid breeding and genetics of forest trees, proceedings of QFRI/CRC-SPF symposium, April 2000 Noosa, Queensland, Australia'. (Eds HS Dungey, MJ Dieters, DG Nikles) pp. 1-13. (Department of Primary Industries: Brisbane)
11. Hare MP (2001) Prospects for nuclear gene phylogeography. Trends in Ecology and Evolution 16, 700-706. doi: 10.1016/S0169-5347(01)02326-6
12. Hare MP, Avise JC (1998) Population structure in the American oyster as inferred by nuclear gene genealogies. Molecular Biology and Evolution 15, 119-128.
13. Jackson HD, Steane DA, Potts BM, Vaillancourt RE (1999) Chloroplast DNA evidence for reticulate evolution in Eucalyptus (Myrtaceae). Molecular Ecology 8, 739-751. doi: 10.1046/j.1365-294X.1999.00614.x
14. Jones RC, Steane DA, Potts BM, Vaillancourt RE (2002) Microsatellite and morphological analysis of Eucalyptus globulus populations. Canadian Journal of Forest Research 32, 59-66. doi: 10.1139/x01-172
15. Jordan GJ, Potts BM, Kirkpatrick JB, Gardiner C (1993) Variation in the Eucalyptus globulus complex revisited. Australian Journal of Botany 41, 763-785.
16. Kirkpatrick JB (1974) The numerical intraspecific taxonomy of Eucalyptus globulus Labill. (Myrtaceae). Botanical Journal of the Linnean Society 69, 89-104.
17. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245. doi: 10.1093/bioinformatics/17.12.1244
18. Lacombe E, Hawkins S, Van Doorsselaere J, Piquemal J, Goffner D, Poeydomenge O, Boudet A-M, Grima-Pettenati J (1997) Cinnamoyl coA reductase, the first committed enzyme of the lignin branch biosynthetic pathway: cloning, expression and phylogenetic relationships. The Plant Journal 11, 429-441. doi: 10.1046/j.1365-313X.1997.11030429.x
19. Ladiges PY, Udovicic F, Nelson G (2003) Australian biogeographic connections and the phylogeny of large genera in the plant family Myrtaceae. Journal of Biogeography 30, 989-998.
20. Lewis CE, Doyle JJ (2001) Phylogenetic utility of the nuclear gene malate synthase in the palm family (Arecaceae). Molecular Phylogenetics and Evolution 19, 409-420. doi: 10.1006/mpev.2001.0932
21. Lewis PO, Zaykin D (2001) 'Genetic data analysis: computer program for the analysis of allelic data, version 1.0.' http://hydrodictyon.eeb.uconn.edu/ people/plewis/software.php
22. Martinsen GD, Whitham TG, Turek RJ, Keim P (2001) Hybrid populations selectively filter gene introgression between species. Evolution 55, 1325-1335.
23. McKinnon GE, Steane DA, Potts BM, Vaillancourt RE (1999) Incongruence between chloroplast and species phylogenies in Eucalyptus subgenus Monocalyptus (Myrtaceae). American Journal of Botany 86, 1038-1046.
24. McKinnon GE, Vaillancourt RE, Jackson HD, Potts BM (2001a) Chloroplast sharing in the Tasmanian eucalypts. Evolution 55, 703-711.
25. McKinnon GE, Vaillancourt RE, Tilyard PA, Potts BM (2001b) Maternal inheritance of the chloroplast genome in Eucalyptus globulus and interspecific hybrids. Genome 44, 831-835. doi: 10.1139/gen-44-5-831
26. McKinnon GE, Vaillancourt RE, Steane DA, Potts BM (2004) The rare silver gum, Eucalyptus cordata, is leaving its trace in the organellar gene pool of Eucalyptus globulus. Molecular Ecology 13, 3751-3762. doi: 10.1111/j.1365-294X. 2004.02364.x
27. Myburg AA, Vogl C, Griffin AR, Sederoff RR, Whetten RW (2004) Genetics of postzygotic isolation in Eucalyptus: whole-genome analysis of barriers to introgression in a wide interspecific cross of Eucalyptus grandis and Eucalyptus globulus. Genetics 166, 1405-1418. doi: 10.1534/genetics.166.3.1405
28. Nei M (1972) Genetic distance between populations. American Naturalist 106, 283-292. doi: 10.1086/282771
29. Nei M (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences, USA 70, 3321-3323.
30. Olsen KM (2002) Population history of Manihot esculenta (Euphorbiaceae) inferred from nuclear DNA sequences. Molecular Ecology 11, 901-911. doi: 10.1046/j.1365-294X.2002.01493.x
31. Olsen KM, Schaal BA (1999) Evidence on the origin of cassava: phylogeography of Manihot esculenta. Proceedings of the National Academy of Sciences, USA 96, 5586-5591. doi: 10.1073/pnas.96.10.5586
32. Pichon M, Courbou I, Beckert M, Boudet AM, Grima-Pettenati J (1998) Cloning and characterisation of two maize cDNAs encoding cinnamoyl-coA reductase (CCR) and differential expression of the corresponding genes. Plant Molecular Biology 38, 671-676. doi: 10.1023/A:1006060101866
33. Poke FS, Vaillancourt RE, Elliott RC, Reid JB (2003) Sequence variation in two lignin biosynthesis genes, cinnamoyl CoA reductase (CCA) and cinnamyl alcohol dehydrogenase 2 (CAD2). Molecular Breeding 12, 107-118. doi: 10.1023/A:1026006828721
34. Pons O, Petit RJ (1996) Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics 144, 1237-1245.
35. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818. doi: 10.1093/bioinformatics/14.9.817
36. Schneider-Broussard R, Felder DL, Chlan CA, Neigel JE (1998) Tests of phylogeographic models with nuclear and mitochondrial DNA sequence variation in the stone crabs, Menippe adina and Menippe mercenaria. Evolution 52, 1671-1678.
37. Small RL, Cronn RC, Wendel JF (2004) Use of nuclear genes for phylogeny reconstruction in plants. Australian Journal of Botany 17, 145-170. doi: 10.1071/SB03015
38. Steane DA, McKinnon GE, Vaillancourt RE, Potts BM (1999) ITS sequence data resolve higher level relationships among the eucalypts. Molecular Phylogenetics and Evolution 12, 215-223. doi: 10.1006/mpev.1999.0612
39. Swofford DL (1991) PAUP: phylogenetic analysis using parsimony, version 3.1. Computer program distributed by the Illinois Natural History Survey, Champaign, IL.
40. Tajima F (1993) Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135, 599-607.
41. Tank DC, Sang T (2001) Phylogenetic utility of the glycerol-3-phosphate acyltransferase gene: evolution and implications in Paeonia (Paeoniaceae). Molecular Phylogenetics and Evolution 19, 421-429. doi: 10.1006/mpev.2001.0931
42. Thamarus KA, Groom K, Murrell J, Byrne M, Moran GF (2002) A genetic linkage map for Eucalyptus globulus with candidate loci for wood, fibre, and floral traits. Theoretical and Applied Genetics 104, 379-387. doi: 10.1007/s001220100717
43. Williams KJ, Potts BM (1996) The natural distribution of Eucalyptus species in Tasmania. Tasforests 8, 39-165.
44. Yeh FC, Yang R, Boyle T (1999) 'POPGENE version 1.32 - computer program.' http://www.ualberta.ca/~fyeh/.
45. Zhang D-X, Hewitt GM (2003) Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Molecular Ecology 12, 563-584. doi: 10.1046/j.1365-294X.2003.01773.x