ITS Sequence Data Resolve Higher Level Relationships Among the Eucalypts

Molecular Phylogenetics and Evolution

Volumn 12, Issue 2, 1999, Pages 215-223

  Steane, Dorothy A ^a   McKinnon, Gay E ^a   Vaillancourt, René E ^a   Potts, Brad M ^a  

^a UNIVERSITY OF TASMANIA   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RNA 5.8S;

ANGIOSPERM; ARTICLE; CLASSIFICATION; DNA SEQUENCE; EUCALYPTUS; GENE; GENE DELETION; GENETIC VARIABILITY; GENETICS; MEDICINAL PLANT; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT;

DNA, RIBOSOMAL; EUCALYPTUS; EVOLUTION, MOLECULAR; GENES, PLANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANTS, MEDICINAL; RNA, RIBOSOMAL, 5.8S; ROSALES; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; VARIATION (GENETICS);

EID: 0033161713     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1999.0612     Document Type: Article

References (38)

1. Baldwin B. G. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositae. Mol. Phylogenet. Evol. 1:1992;3-16.
2. Baldwin B. G. Molecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: Chromosomal and morphological evolution reexamined. Am. J. Bot. 80:1993;222-238.
3. Baldwin B. G., Sanderson M. J., Porter J. M., Wojciechowski M. F., Campbell C. S., Donoghue M. J. The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 82:1995;247-277.
4. Boland D. J., Brooker M. I. H., Chippendale G. M., Hall N., Hyland B. P. M., Johnston R. D., Kleinig D. A., Turner J. D. Forest Trees of Australia. 1984;Nelson, CSIRO.
5. Boland D. J., Sedgley M. Stigma and style morphology in relation to taxonomy and breeding systems in Eucalyptus and Angophora (Myrtaceae). Aust. J. Bot. 34:1986;569-584.
6. Byrne M., Moran G. F., Tibbits W. Restriction map and maternal inheritance of chloroplast DNA in Eucalyptus nitens. J. Hered. 84:1993;218-220.
7. Chippendale G. M. Eucalyptus, Angophora (Myrtaceae). Flora of Australia. 19:1988.
8. Eldridge K., Davidson J., Harwood C., Van Wyk G. Eucalypt Domestication and Breeding. 1993;Oxford Univ. Press, New York.
9. Ellis M. F., Sedgley M., Gardner J. A. Interspecific pollen-pistil interaction in Eucalyptus L'Her. (Myrtaceae): The effect of taxonomic distance. Ann. Bot. 68:1991;185-194.
10. Gonzalez I. L., Sylvester J. E., Smith T. F., Stambolian D., Schmickel R. D. Ribosomal RNA gene sequences and hominoid phylogeny. Mol. Biol. Evol. 7:1990;203-219.
11. Griffin A. R., Burgess I. P., Wolf L. Patterns of natural and manipulated hybridisation in the genus Eucalyptus L'Hérit. - A review. Aust. J. Bot. 36:1988;41-66.
12. Hill K. D., Johnson L. A. S. Systematic studies in the eucalypts. 7. A revision of the bloodwoods, genus Corymbia (Myrtaceae). Telopea. 6:1995;185-504.
13. Johnson L. A., Soltis D. E. Phylogenetic inference in Saxifragaceae sensu stricto and Gilia (Polemoniaceae) using matK sequences. Ann. Missouri Bot. Gard. 82:1995;149-175.
14. Johnson L. A. S. Problems of species and genera in Eucalyptus (Myrtaceae). Plant Syst. Evol. 125:1976;155-167.
15. Kiss T., Kis M., Abel S., Solymosy F. Nucleotide sequence of the 17S-25S region from tomato rDNA. Nucleic Acids Res. 16:1988;7179.
16. Ladiges P. Y. Phylogenetic history and classification of eucalypts. Williams J. E., Woinarski J. C. Z. Eucalypt Ecology: Individuals to Ecosystems. 1997;16-29 Cambridge Univ. Press, Cambridge.
17. Ladiges P. Y., Humphries C. J. A cladistic study of Arillastrum, Angophora and Eucalyptus (Myrtaceae). Bot. J. Linn. Soc. 87:1983;105-134.
18. Ladiges P. Y., Humphries C. J., Brooker M. I. H. Cladistic and biogeographic analysis of Western Australian species of Eucalyptus L'Hérit., informal subgenus Monocalyptus Pryor & Johnson. Aust. J. Bot. 35:1987;251-281.
19. Ladiges P. Y., Udovicic F., Drinnan A. N. Eucalypt phylogeny - Molecules and morphology. Aust. Syst. Bot. 8:1995;483-497.
20. Lee S. B., Taylor J. W. Phylogeny of five fungus-like protocistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA. Mol. Biol. Evol. 9:1992;636-653.
21. McKinnon G. E., Steane D. A., Potts B. M., Vaillancourt R. E. Incongruence between chloroplast and species phylogenies in Eucalyptus subgenus Monocalyptus. Am. J. Bot. 1999.
22. Olmstead R. G., Michaels H. J., Scott K. M., Palmer J. D. Monophyly of the Asteridae and identification of their major lineages inferred from DNA sequences of rbcL. Ann. Missouri Bot. Gard. 79:1992;249-265.
23. Olmstead R. G., Reeves P. A. Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndhF sequences. Ann. Missouri Bot. Gard. 82:1995;176-193.
24. Pryor L. D., Johnson L. A. S. A Classification of the Eucalypts. 1971;Australian National Univ. Press, Canberra.
25. Pryor L. D., Johnson L. A. S. Eucalyptus: The universal Australian. Keast A. Ecological Biogeography of Australia. 1981;499-536 Junk, The Hague.
26. Sale M. M., Potts B. M., West A. K., Reid J. B. Relationships in Eucalyptus using chloroplast DNA. Aust. Syst. Bot. 6:1993;127-138.
27. Sale M. M., Potts B. M., West A. K., Reid J. B. Relationships within Eucalyptus (Myrtaceae) using PCR-amplification and southern hybridisation of chloroplast DNA. Aust. Syst. Bot. 9:1996;273-282.
28. Sanderson M. J., Donoghue M. J. Patterns of variation in levels of homoplasy. Evolution. 43:1989;1781-1795.
29. Steane D. A., Byrne M., Vaillancourt R. E., Potts B. M. Chloroplast DNA polymorphism signals complex interspecific interactions in Eucalyptus (Myrtaceae). Aust. Syst. Bot. 11:1998;25-40.
30. Steane D. A., Scotland R. W., Mabberley D. J., Olmstead R. G. Molecular systematics of Clerodendrum (Lamiaceae): ITS sequences and total evidence. Am. J. Bot. 86:1999;98-107.
31. Suh Y., Thien L. B., Reeve H. E., Zimmer E. A. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. Am. J. Bot. 80:1993;1042-1055.
32. Swofford, D. L.1991. PAUP: Phylogenetic Analysis Using Parsimony, Version 3.1., Computer program distributed by the Illinois Natural History Survey, Champaign, Illinois.
33. Thompson J. D., Higgins D. G., Gibson T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
34. Udovicic F., McFadden G. I., Ladiges P. Y. Phylogeny of Eucalyptus and Angophora based on 5S rDNA spacer sequence data. Mol. Phylogenet. Evol. 4:1995;247-256.
35. White T. J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Innis M. D., Gelfand D., Sninsky J., White T. PCR Protocols: A Guide to Methods and Applications. 1990;315-322 Academic Press, San Diego.
36. Williams J. E., Brooker M. I. H. Eucalypts: An introduction. Williams J. E., Woinarski J. C. Z. Eucalypt Ecology: Individuals to Ecosystems. 1997;1-15 Cambridge Univ. Press, Cambridge.
37. Wojciechowski M. F., Sanderson M. J., Baldwin B. G., Donoghue M. J. Monophyly of aneuploid Astragalus (Fabaceae): Evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Am. J. Bot. 80:1993;711-722.
38. Yuan Y.-M., Küpfer P., Doyle J. J. Infrageneric phylogeny of the genus Gentiana (Gentianaceae) inferred from nucleotide sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA. Am. J. Bot. 83:1996;641-652.