Sequence variation in two lignin biosynthesis genes, cinnamoyl CoA reductase (CCR) and cinnamyl alcohol dehydrogenase 2 (CAD2)

Molecular Breeding

Volumn 12, Issue 2, 2003, Pages 107-118

  Poke, Fiona S ^a   Vaillancourt, René E ^a   Elliott, Robert C ^a   Reid, James B ^a  

^a UNIVERSITY OF TASMANIA   (Australia)

Author keywords

Candidate genes; Eucalypt genetics; Eucalyptus globulus; Lignin; Single nucleotide polymorphism

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; ENZYME ACTIVITY; GENES; NUCLEOTIDES;

AMINO-ACIDS; CANDIDATE GENES; CINNAMYL ALCOHOL DEHYDROGENASE; EUCALYPT GENETIC; EUCALYPTUS GLOBULUS; LIGNIN BIOSYNTHESIS; LIGNIN CONTENTS; PROTEIN SEQUENCES; SEQUENCE VARIATIONS; SINGLE NUCLEOTIDE POLYMORPHISMS;

LIGNIN;

EMBRYOPHYTA; EUCALYPTUS; EUCALYPTUS GLOBULUS; INSERTION SEQUENCES;

EID: 0142245736     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1026006828721     Document Type: Article

References (36)

1. Baucher M., Monties B., Van Montagu M. and Boerjan W. 1998. Biosynthesis and genetic engineering of lignin. Crit. Rev. Plant Sci. 17: 125-197.
2. Boudet A.-M., Chabannes M., Goffner D., Lapierre C., Piquemal J., Petit-Conil M. et al. 1998. Controlled down-regulation of genes involved in the last steps of lignin synthesis may significantly change the lignin profiles of plants. In: Proceedings of the Molecular Breeding of Woody Species. Tokyo, Japan, pp. 1-21.
3. De Melis L.E., Whiteman P.H. and Stevenson T.W. 1999. Isolation and characterisation of a cDNA clone encoding cinnamyl alcohol dehydrogenase in Eucalyptus globulus Labill. Plant Sci. 143: 173-182.
4. Dimmel D.R., MacKay J.J., Althen E.M., Parks C. and Sederoff R.R. 2001. Pulping and bleaching of CAD-deficient wood. J. Wood Chem. Technol. 21: 1-17.
5. Doyle J.J. and Doyle J.L. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
6. Dutkowski G.W. and Potts B.M. 1999. Geographic patterns of genetic variation in Eucalyptus globulus ssp. globulus and a revised racial classification. Aust. J. Bot. 47: 237-263.
7. Gardiner C.A. and Crawford D.F. 1987. 1987 Seed collections of Eucalyptus globulus subsp. globulus for tree improvement purposes. CSIRO Division of Forest Research, Canberra.
8. Gardiner C.A. and Crawford D.F. 1988. 1988 Seed collections of Eucalyptus globulus subsp. globulus Labill. for tree improvement purposes. CSIRO Division of Forestry and Forest Products, Canberra.
9. Gaut B.S. and Clegg M.T. 1993. Molecular evolution of the Adh1 locus in the genus Zea. Proc. Natl. Acad. Sci. USA 90: 5095-5099.
10. Gion J.M., Boudet C., Grima-Pettenati J., Pichavant F.H., Plomion C., Baillères H. et al. 2001. A candidate genes approach identifies CCR, PAL and C4H as loci for syringyl/guaiacyl ratio in a interspecific hybrid between E. urophylla and E. grandis. In: Barros S. (ed.), Developing the Eucalypt of the Future. Proceedings of IUFRO International Symposium 10-15th September 2001, Valdivia, Chile.
11. Goffner D., Campbell M.M., Campargue C., Clastre M., Borderies G., Boudet A. et al. 1994. Purification and characterisation of cinnamoyl-coenzyme A:NADP oxidoreductase in Eucalyptus gunnii. Plant Physiol. 106: 625-632.
12. Goffner D., Joffroy I., Grima-Pettenati J., Halpin C., Knight M.E., Schuch W. et al. 1992. Purification and characterization of isoforms of cinnamyl alcohol dehydrogenase from Eucalyptus xylem. Planta 188: 48-53.
13. Grima-Pettenati J., Feuillet C., Goffner D., Borderies G. and Boudet A.M. 1993. Molecular cloning and expression of a Eucalyptus gunnii cDNA clone encoding cinnamyl alcohol dehydrogenase. Plant Mol. Biol. 21: 1085-1095.
14. Hawkins S., Goffner D. and Boudet A.M. 1994. Cinnamyl alcohol dehydrogenase polymorphism and its potential role in the control of lignin heterogeneity. In: International Symposium on Natural Phenols in Plant Resistance. Weihenstephan, Germany, pp. 280-286.
15. rd Appita annual conference. APPITA, Rotorua, New Zealand, pp. 19-22.
16. Jones L., Ennos A.R. and Turner S.R. 2001. Cloning and characterization of irregular xylem4 (irx4): a severely lignin-deficient mutant of Arabidopsis. Plant J. 26: 205-216.
17. Kawabe A., Yamane K. and Miyashita N.T. 2000. DNA polymorphism at the cytosolic phosphoglucose isomerase (PgiC) locus of the wild plant Arabidopsis thaliana. Genetics 156: 1339-1347.
18. Lacombe E., Hawkins S., Van Doorsselaere J., Piquemal J., Goffner D., Poeydomenge O. et al. 1997. Cinnamoyl coA reductase, the first committed enzyme of the lignin branch biosynthetic pathway: cloning, expression and phylogenetic relationships. Plant J. 11: 429-441.
19. Lewin B. 1997. Genes VI. Oxford University Press, New York.
20. Mackay T.F. 2001. Quantitative trait loci in Drosophila. Nat. Rev. Genet. 2: 11-20.
21. McCarthy L.C., Hosford D.A., Riley J.H., Bird M.I., White N.J., Hewett D.R. et al. 2001. Single-nucleotide polymorphism alleles in the insulin receptor gene are associated with typical migraine. Genomics 78: 135-149.
22. Miranda I. and Pereira H. 2001. Provenance effect on wood chemical composition and pulp yield for Eucalyptus globulus Labill. Appita J. 54: 347-351.
23. Nesbitt K.A., Potts B.M., Vaillancourt R.E., West A.K. and Reid J.B. 1995. Partitioning and distribution of RAPD variation in a forest tree species, Eucalyptus globulus (Myrtaceae). Hered. 74: 628-637.
24. Ohta T. 1993. Amino acid substitution at the Adh locus of Drosophila is facilitated by small population size. Proc. Natl. Acad. Sci. USA 90: 4548-4551.
25. Pichon M., Courbou I., Beckert M., Boudet A.M. and Grima-Pettenati J. 1998. Cloning and characterisation of two maize cDNAs encoding cinnamoyl-coA reductase (CCR) and differential expression of the corresponding genes. Plant Mol. Biol. 38: 671-676.
26. Piquemal J., Lapierre C., Myton K., O'Connell A., Schuch W., Grima-Pettenati J. et al. 1998. Down-regulation of cinnamoyl-coA reductase induces significant changes of lignin profiles in transgenic tobacco plants. Plant J. 13: 71-83.
27. Potts B.M., Barbour R.C., Hingston A. and Vaillancourt R.E. 2003. Turner Review No. 6: Genetic pollution of native eucalypt gene pools, identifying the risks. Aust. J. Bot. 51: 1-25.
28. Rafalski A. 2002. Applications of single nucleotide polymorphisms in crop genetics. Curr. Opin. Plant Biol. 5: 94-100.
29. Ralph J., MacKay J.J., Hatfield R.D., O'Malley D.M., Whetten R.W. and Sederoff R.R. 1997. Abnormal lignin in a loblolly pine mutant. Science 277: 235-239.
30. Rodrigues J., Meier D., Faix O. and Pereira H. 1999. Determination of tree to tree variation in syringyl/guaiacyl ratio of Eucalyptus globulus wood lignin by analytical pyrolysis. J. Anal. Appl. Pyrolysis 48: 121-128.
31. Singh S.V., Kumari R. and Guha S.R.D. 1982. Lignin composition and its influence on kinetics of kraft pulping tropical hardwoods. Indian Pulp Paper 1: 5-16.
32. Syvånen A.-C., Landegren U., Isaksson A., Gyllensten U. and Brookes A. 1999. Enthusiasm mixed with scepticism about single-nucleotide polymorphism markers for dissecting complex disorders. Eur. J. Human Genetics 7: 98-101.
33. Tenaillon M.I., Sawkins M.C., Long A.D., Gaut R.L., Doebley J.F. and Gaut B.S. 2001. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. USA 98: 9161-9166.
34. Terauchi R., Terachi T. and Miyashita N.T. 1997. DNA polymorphism at the Pgi locus of a wild yam, Dioscorea tokoro. Genetics 147: 1899-1914.
35. Wallis A.F.A., Wearne R.H. and Wright P.J. 1996. Analytical characteristics of plantation eucalypt woods relating to kraft pulp yields. Appita J. 49: 427-432.
36. Wood M.S., Stephens N.C., Allison B.K. and Howell C.I. 2001. Plantations of Australia - A Report from the National Plantation Inventory and the National Farm Forest Inventory. Bureau of Rural Sciences, Canberra.