(3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex

Journal of the American Chemical Society

Volumn 127, Issue 49, 2005, Pages 17277-17285

  Zhang, Na ^a   Phan, Anh Tuân ^a   Patel, Dinshaw J ^a  

^a MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIMERS; DNA SEQUENCES; MOLECULAR STRUCTURE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

DNA FRAGMENTS; GUANINE-TRACTS; HUMAN TELOMERE;

DNA;

DNA; GUANINE DERIVATIVE; SODIUM ION;

ARTICLE; DIMERIZATION; DNA SEQUENCE; DNA STRUCTURE; HUMAN; NUCLEAR MAGNETIC RESONANCE; NUCLEOTIDE REPEAT; PROTEIN ASSEMBLY; SEQUENCE ANALYSIS; TELOMERE;

BASE SEQUENCE; DNA; GUANINE; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; TELOMERE; TERMINAL REPEAT SEQUENCES;

EID: 29044436682     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0543090     Document Type: Article

References (50)

1. Blackburn, E. H. FEBS Lett. 2005, 579, 859-862.
2. (a) Henderson, E. In Telomeres (Blackburn, E. H.; Greider, C. W., Eds.), pp 11-34, Cold Spring Harbor Laboratory Press 1995.
3. (b) Wellinger, R. J., Sen, D. Eur. J. Cancer 1997, 33, 735-749.
4. (a) Williamson, J. R. Curr. Opin. Struct. Biol. 1993, 3, 357-362.
5. (b) Patel, D. J.; Bouaziz, S.; Kettani, A.; Wang, Y. In Oxford Handbook of Nucleic Acid Structures; Neidle, S., Ed.; Oxford University Press: Oxford 1999; pp 389-453.
6. (c) Gilbert, D. E.; Feigon, J. Curr. Opin. Struct. Biol. 1999, 9, 305-314.
7. (d) Keniry, M. A. Biopolymers 2000-2001, 56, 123-146.
8. (e) Shafer, R. H.; Smirnov, I. Biopolymers 2000-2001, 56, 209-227.
9. (f) Simonsson, T. Biol. Chem. 2001, 382, 621-628.
10. (g) Arthanari, H.; Bolton, P. H. Chem. Biol. 2001, 8, 221-230.
11. (h) Neidle, S.; Parkinson, G. N. Curr. Opin. Struct. Biol. 2003, 13, 275-283.
12. (i) Davis, J. T. Angew. Chem., Int. Ed. Engl. 2004, 43, 668-698.
13. (a) Neidle, S.; Parkinson, G. Nat. Rev. Drug. Des. 2002, 1, 383-393.
14. (b) Hurley, L. H. Nat. Rev. Cancer. 2002, 2, 188-200.
15. (c) Mergny, J. L.; Hélène, C. Nat. Med. 1998, 4, 1366-1367.
16. (d) Kerwin, S. M. Curr. Pharm. Des. 2000, 6, 441-478.
17. (e) Perry, P. J.; Jenkins, T. C. Mini. Rev. Med. Chem. 2001, 441-41.
18. (f) Riou, J. F. Curr. Med. Chem. Anti-Cancer Agents 2004, 4, 439-443.
19. (g) Phan, A. T.; Kuryavyi, V.; Gaw, H. Y.; Patel, D. J. Nat. Chem. Biol. 2005, 1, 167-173.
20. (a) Wang, Y.; Patel, D. J. Biochemistry 1992, 31, 8112-8119.
21. (b) Patel, P. K.; Koti, A. S.; Hosur, R. V. Nucleic Acids Res. 1999, 27, 3836-3843.
22. (c) Gavathiotis, E.; Searle, M. S. Org. Biomol. Chem. 2003, 1, 1650-1656.
23. Parkinson, G. N.; Lee, M. P. H.; Neidle, S. Nature 2002, 417, 876-880.
24. Phan, A. T.; Patel, D. J. J. Am. Chem. Soc. 2003, 125, 15021-15027.
25. Wang, Y.; Patel, D. J. Structure 1993, 1, 263-282.
26. Phan, A. T.; Modi, Y. S.; Patel, D. J. J. Mol. Biol. 2004, 338, 93-102.
27. Wang, Y.; Patel, D. J. Structure 1994, 2, 1141-1156.
28. Phan, A. T.; Patel, D. J. J. Am. Chem. Soc. 2002, 124, 1160-1161.
29. The U-for-T substitution was used for the spectral assignment purpose and did not change the outcome of the strand-mixing experiments.
30. Phan, A. T.; Kuryavyi, V.; Ma, J. B.; Faure, A.; Andréola, M. L.; Patel, D. J. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 634-639.
31. Brünger, A. T. X-PLOR: A system for X-ray crystallography and NMR, Yale University Press: New Haven, CT, 1992.
32. (a) Kuryavyi, V. V.; Jovin, T. M. In Biological Structure and Dynamics; Sarma, R. H., Sarma, M. H., Eds.; Adenine Press: New York, 1996; Vol. 2, pp 91-103.
33. (b) Kettani, A.; Basu, G.; Gorin, A.; Majumdar, A.; Skripkin, E.; Patel, D. J. J. Mol. Biol. 2000, 301, 129-146.
34. (a) Smith, F. W.; Feigon, J. Nature 1992, 356, 164-168.
35. (b) Smith, F. W.; Schultze, P.; Feigon, J. Structure 1995, 3, 997-1008.
36. (c) Wang, Y.; Patel, D. J. J. Mol. Biol. 1995, 251, 76-94.
37. (d) Kettani, A.; Bouaziz, S.; Wang, W.; Jones, R. A.; Patel, D. J. Nat. Struct. Biol. 1997, 4, 382-389.
38. (e) Haider, S.; Parkinson, G. N.; Neidle, S. J. Mol. Biol. 2002, 320, 189-200.
39. Makarov, V. L.; Hirose, Y.; Langmore, J. P. Cell 1997, 88, 657-666.
40. Greider, C. W.; Blackburn, E. H. Cell, 1985, 43, 405-413.
41. Kim, N. W.; Piatyszek, M. A.; Prowse, K. R.; Harley, C. B.; West, M. D.; Ho, P. L.; Coviello, G. M.; Wright, W. E.; Weinrich, S. L.; Shay, J. W. Science 1994, 266, 2011-2015.
42. Zahler, A. M.; Williamson, J. R.; Cech, T. R.; Prescott, D. M. Nature 1991, 350, 718-720.
43. Griffith, J. D.; Comeau, L.; Rosenfield, S.; Stansel, R. M.; Bianchi, A.; Moss, H.; de Lange, T. Cell 1999, 97, 503-514.
44. (a) Datta, B.; Schmitt, C.; Armitage, B. A. J. Am. Chem. Soc. 2003, 125, 4111-4118.
45. (b) Datta, B.; Bier, M. E.; Roy, S.; Armitage, B. A. J. Am. Chem. Soc. 2005, 127, 4199-4207.
46. (a) Kettani, A.; Gorin, A.; Majumdar, A.; Hermann, T.; Skripkin, E.; Zhao, H.; Jones, R.; Patel, D. J. J. Mol. Biol. 2000, 297, 627-644.
47. (b) Zhang, N.; Gorin, A.; Majumdar, A.; Kettani, A.; Chernichenko, N.; Skripkin, E.; Patel, D. J. J. Mol. Biol. 2001, 311, 1063-1079.
48. Plateau, P.; Gueŕon, M. J. Am. Chem. Soc. 1982, 104, 7310-7311.
49. (a) Phan, A. T. J. Biomol. NMR 2000, 16, 175-178.
50. (b) Phan, A. T.; Gueŕon, M.; Leroy, J. L. Methods Enzymol. 2001, 338, 341-371.