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Volumn 44, Issue 49, 2005, Pages 15970-15977

Quantitative 13C and 2H NMR relaxation studies of the 723-residue enzyme malate synthase G reveal a dynamic binding interface

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTICS; NUCLEAR MAGNETIC RESONANCE; PROTEINS; SUBSTRATES;

EID: 28944442463     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0519809     Document Type: Article
Times cited : (70)

References (52)
  • 1
    • 0037666888 scopus 로고    scopus 로고
    • Implications of protein flexibility for drug discovery
    • Teague, S. J. (2003) Implications of protein flexibility for drug discovery, Nat. Rev. Drug Discovery 2, 527-541.
    • (2003) Nat. Rev. Drug Discovery , vol.2 , pp. 527-541
    • Teague, S.J.1
  • 2
    • 0347761359 scopus 로고    scopus 로고
    • NMR spectroscopy tools for structure-aided drug design
    • Romans, S. W. (2004) NMR spectroscopy tools for structure-aided drug design, Angew. Chem., Int. Ed. 43, 290-300.
    • (2004) Angew. Chem., Int. Ed. , vol.43 , pp. 290-300
    • Romans, S.W.1
  • 5
    • 0034919305 scopus 로고    scopus 로고
    • NMR methods for quantifying microsecond-to-millisecond motions in biological macromolecules
    • Palmer, A. G., Kroenke, C. D., and Loria, J. P. (2001) NMR methods for quantifying microsecond-to-millisecond motions in biological macromolecules, Methods Enzymol. 339, 204-238.
    • (2001) Methods Enzymol , vol.339 , pp. 204-238
    • Palmer, A.G.1    Kroenke, C.D.2    Loria, J.P.3
  • 6
    • 0030612833 scopus 로고    scopus 로고
    • 2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution
    • 2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution, Proc. Natl. Acad. Sci. U.S.A. 94, 12366-12371.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 12366-12371
    • Pervushin, K.1    Riek, R.2    Wider, G.3    Wüthrich, K.4
  • 7
    • 0041930989 scopus 로고    scopus 로고
    • 13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes
    • 13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes, J. Am. Chem. Soc. 125, 10420-10428.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 10420-10428
    • Tugarinov, V.1    Hwang, P.M.2    Ollerenshaw, J.E.3    Kay, L.E.4
  • 8
    • 4344565815 scopus 로고    scopus 로고
    • Relaxation-optimized NMR spectroscopy of methylene groups in proteins and nucleic acids
    • Miclet, E., Williams, D. C., Jr., Clore, G. M., Bryce, D. L., Boisbouvier, J., and Bax, A. (2004) Relaxation-optimized NMR spectroscopy of methylene groups in proteins and nucleic acids, J. Am. Chem. Soc. 126, 10560-10570.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 10560-10570
    • Miclet, E.1    Williams Jr., D.C.2    Clore, G.M.3    Bryce, D.L.4    Boisbouvier, J.5    Bax, A.6
  • 9
    • 20444374161 scopus 로고    scopus 로고
    • Probing side-chain dynamics in high molecular weight proteins by deuterium NMR spin relaxation: An application to an 82-kDa enzyme
    • Tugarinov, V., Ollerenshaw, J. E., and Kay, L. E. (2005) Probing side-chain dynamics in high molecular weight proteins by deuterium NMR spin relaxation: An application to an 82-kDa enzyme, J. Am. Chem. Soc. 127, 8214-8225.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 8214-8225
    • Tugarinov, V.1    Ollerenshaw, J.E.2    Kay, L.E.3
  • 10
    • 0000581636 scopus 로고
    • Synthesis of cell constituents from C2-units by a modified tricarboxylic acid cycle
    • Kronberg, H. L., and Krebs, H. A. (1957) Synthesis of cell constituents from C2-units by a modified tricarboxylic acid cycle, Nature 179, 988-991.
    • (1957) Nature , vol.179 , pp. 988-991
    • Kronberg, H.L.1    Krebs, H.A.2
  • 11
    • 0034679958 scopus 로고    scopus 로고
    • Lipid lunch for persistent pathogen
    • Bishai, W. (2000) Lipid lunch for persistent pathogen, Nature 406, 683-685.
    • (2000) Nature , vol.406 , pp. 683-685
    • Bishai, W.1
  • 13
    • 0035811478 scopus 로고    scopus 로고
    • The glyoxalate cycle is required for fungal virulence
    • Lorentz, M. C., and Fink, G. R. (2001) The glyoxalate cycle is required for fungal virulence, Nature 412, 83-86.
    • (2001) Nature , vol.412 , pp. 83-86
    • Lorentz, M.C.1    Fink, G.R.2
  • 14
    • 28944445952 scopus 로고    scopus 로고
    • Factsheet No. 104 (2005) World Health Organization, http://www.who.int/ mediacentre/factsheets/fs104/en/.
    • (2005) Factsheet No. 104
  • 15
    • 0041510314 scopus 로고    scopus 로고
    • Structure of the Escherichia coli Malate Synthase G:pyruvate: acetylcoenzyme a abortive ternary complex at 1.95 A° resolution
    • Anström, D. M., Kallio, K., and Remington, S. J. (2003) Structure of the Escherichia coli Malate Synthase G:pyruvate:acetylcoenzyme A abortive ternary complex at 1.95 A° resolution, Protein Sci. 12, 1822-1832.
    • (2003) Protein Sci. , vol.12 , pp. 1822-1832
    • Anström, D.M.1    Kallio, K.2    Remington, S.J.3
  • 16
    • 0034696680 scopus 로고    scopus 로고
    • Crystal structure of Escherichia coli malate synthase G complexed with magnesium and glyoxylate at 2.0 A° resolution: Mechanistic implications
    • Howard, B. R., Endrizzi, J. A., and Remington, S. J. (2000) Crystal structure of Escherichia coli malate synthase G complexed with magnesium and glyoxylate at 2.0 A° resolution: Mechanistic implications, Biochemistry 39, 3156-3168.
    • (2000) Biochemistry , vol.39 , pp. 3156-3168
    • Howard, B.R.1    Endrizzi, J.A.2    Remington, S.J.3
  • 18
    • 0037432547 scopus 로고    scopus 로고
    • Quantitative NMR studies of high molecular weight proteins: Application to domain orientation and ligand binding in the 723-residue enzyme malate synthase G
    • Tugarinov, V., and Kay, L. E. (2003) Quantitative NMR studies of high molecular weight proteins: Application to domain orientation and ligand binding in the 723-residue enzyme malate synthase G, J. Mol. Biol. 327, 1121-1133.
    • (2003) J. Mol. Biol. , vol.327 , pp. 1121-1133
    • Tugarinov, V.1    Kay, L.E.2
  • 19
    • 0037189901 scopus 로고    scopus 로고
    • Four-dimensional NMR spectroscopy of a 723-residue protein: Chemical shift assignments and secondary structure of malate synthase G
    • Tugarinov, V., Muhandiram, R., Ayed, A., and Kay, L. E. (2002) Four-dimensional NMR spectroscopy of a 723-residue protein: Chemical shift assignments and secondary structure of malate synthase G, J. Am. Chem. Soc. 124, 10025-10035.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 10025-10035
    • Tugarinov, V.1    Muhandiram, R.2    Ayed, A.3    Kay, L.E.4
  • 20
    • 0242407224 scopus 로고    scopus 로고
    • He, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods
    • Tugarinov, V., and Kay, L. E. (2003) He, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods, J. Am. Chem. Soc. 125, 13868-13878.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 13868-13878
    • Tugarinov, V.1    Kay, L.E.2
  • 21
    • 0030824756 scopus 로고    scopus 로고
    • 1H-δ1 methyl) isoleucine into proteins for multidimensional NMR studies
    • 1H-δ1 methyl) isoleucine into proteins for multidimensional NMR studies, J. Am. Chem. Soc. 119, 7599-7600.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 7599-7600
    • Gardner, K.H.1    Kay, L.E.2
  • 23
    • 3543088098 scopus 로고    scopus 로고
    • Stereospecific NMR assignments of prochiral methyls, rotameric states and dynamics of valine residues in malate synthase G
    • Tugarinov, V., and Kay, L. E. (2004) Stereospecific NMR assignments of prochiral methyls, rotameric states and dynamics of valine residues in malate synthase G, J. Am. Chem. Soc. 126, 9827-9836.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 9827-9836
    • Tugarinov, V.1    Kay, L.E.2
  • 24
    • 34249765651 scopus 로고
    • NMRView. A computer program for the visualization and analysis of NMR data
    • Johnson, B. A., and Blevins, R. A. (1994) NMRView. A computer program for the visualization and analysis of NMR data, J. Biomol. NMR 4, 603-614.
    • (1994) J. Biomol. NMR , vol.4 , pp. 603-614
    • Johnson, B.A.1    Blevins, R.A.2
  • 25
    • 0033572874 scopus 로고    scopus 로고
    • 2 methyl isotopomers to detect slow conformational changes of protein side-chains
    • 2 methyl isotopomers to detect slow conformational changes of protein side-chains, J. Am. Chem. Soc. 121, 11589-11590.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 11589-11590
    • Ishima, R.1    Louis, J.M.2    Torchia, D.A.3
  • 26
    • 33646719091 scopus 로고
    • Model-free approach to the interpretation of nuclear magnetic relaxation in macromolecules: 1. Theory and range of validity
    • Lipari, G., and Szabo, A. (1982) Model-free approach to the interpretation of nuclear magnetic relaxation in macromolecules: 1. Theory and range of validity, J. Am. Chem. Soc. 104, 4546-4559.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 4546-4559
    • Lipari, G.1    Szabo, A.2
  • 27
    • 33845553743 scopus 로고
    • Model-free approach to the interpretation of nuclear magnetic relaxation in macromolecules: 2. Analysis of experimental results
    • Lipari, G., and Szabo, A. (1982) Model-free approach to the interpretation of nuclear magnetic relaxation in macromolecules: 2. Analysis of experimental results, J. Am. Chem. Soc. 104, 4559-4570.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 4559-4570
    • Lipari, G.1    Szabo, A.2
  • 30
    • 0033579152 scopus 로고    scopus 로고
    • 2H quadrupolar couplings in oriented proteins. How uniform is the quadrupolar coupling constant?
    • 2H quadrupolar couplings in oriented proteins. How uniform is the quadrupolar coupling constant? J. Am. Chem. Soc. 121, 10608-10613.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 10608-10613
    • Mittermaier, A.1    Kay, L.E.2
  • 33
    • 0019322641 scopus 로고
    • Carbon-13 nuclear magnetic resonance relaxation studies of internal mobility of the polypeptide chain in basic pancreatic trypsin inhibitor and a selectively reduced analogue
    • Richarz, R., Nagayama, K., and Wüthrich, K. (1980) Carbon-13 nuclear magnetic resonance relaxation studies of internal mobility of the polypeptide chain in basic pancreatic trypsin inhibitor and a selectively reduced analogue, Biochemistry 19, 5189-5196.
    • (1980) Biochemistry , vol.19 , pp. 5189-5196
    • Richarz, R.1    Nagayama, K.2    Wüthrich, K.3
  • 34
    • 0022543092 scopus 로고
    • 13C NMR spectroscopy of alanine methyl groups in detergent-solubilized M13 coat protein
    • 13C NMR spectroscopy of alanine methyl groups in detergent-solubilized M13 coat protein, Biochemistry 25, 590-598.
    • (1986) Biochemistry , vol.25 , pp. 590-598
    • Henry, G.D.1    Weiner, J.H.2    Sykes, B.D.3
  • 36
    • 0024246956 scopus 로고
    • Surface, subunit interfaces and interior of oligomeric proteins
    • Janin, J., Miller, S., and Chothia, C. (1988) Surface, subunit interfaces and interior of oligomeric proteins, J. Mol. Biol. 204, 155-164.
    • (1988) J. Mol. Biol. , vol.204 , pp. 155-164
    • Janin, J.1    Miller, S.2    Chothia, C.3
  • 37
    • 0023723196 scopus 로고
    • Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences
    • McCaldon, P., and Argos, P. (1988) Oligopeptide biases in protein sequences and their use in predicting protein coding regions in nucleotide sequences, Proteins 4, 99-122.
    • (1988) Proteins , vol.4 , pp. 99-122
    • McCaldon, P.1    Argos, P.2
  • 38
    • 24744447629 scopus 로고    scopus 로고
    • Methyl groups as probes of structure and dynamics in NMR studies of high-molecular-weight proteins
    • Tugarinov, V., and Kay, L. E. (2005) Methyl groups as probes of structure and dynamics in NMR studies of high-molecular-weight proteins, Chembiochem 6, 1567-1577.
    • (2005) Chembiochem , vol.6 , pp. 1567-1577
    • Tugarinov, V.1    Kay, L.E.2
  • 41
    • 44949272393 scopus 로고
    • 2 and NOE measurements in macromolecules
    • 2 and NOE measurements in macromolecules, J. Magn. Reson. 95, 536-547.
    • (1991) J. Magn. Reson. , vol.95 , pp. 536-547
    • Kay, L.E.1    Torchia, D.A.2
  • 42
    • 0037063506 scopus 로고    scopus 로고
    • An NMR experiment for the accurate measurement of heteronuclear spin-lock relaxation rates
    • Korzhnev, D. M., Skrynnikov, N. R., Millet, O., Torchia, D. A., and Kay, L. E. (2002) An NMR experiment for the accurate measurement of heteronuclear spin-lock relaxation rates, J. Am. Chem. Soc. 124, 10743-10753.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 10743-10753
    • Korzhnev, D.M.1    Skrynnikov, N.R.2    Millet, O.3    Torchia, D.A.4    Kay, L.E.5
  • 43
    • 0033583758 scopus 로고    scopus 로고
    • How tetrahedral are methyl groups in proteins? A liquid crystal NMR study
    • Ottiger, M., and Bax, A. (1999) How tetrahedral are methyl groups in proteins? A liquid crystal NMR study, J. Am. Chem. Soc. 121, 4690-4695.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 4690-4695
    • Ottiger, M.1    Bax, A.2
  • 44
    • 0036000577 scopus 로고    scopus 로고
    • Effect of deuteration on some structural parameters of methyl groups in proteins as evaluated by residual dipolar couplings
    • Mittermaier, A., and Kay, L. E. (2002) Effect of deuteration on some structural parameters of methyl groups in proteins as evaluated by residual dipolar couplings, J. Biomol. NMR 23, 35-45.
    • (2002) J. Biomol. NMR , vol.23 , pp. 35-45
    • Mittermaier, A.1    Kay, L.E.2
  • 45
    • 3042639229 scopus 로고    scopus 로고
    • The origin of protein side-chain order parameter distributions
    • Best, R. B., Clarke, J., and Karplus, M. (2004) The origin of protein side-chain order parameter distributions, J. Am. Chem. Soc. 126, 7734-7735.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 7734-7735
    • Best, R.B.1    Clarke, J.2    Karplus, M.3
  • 46
    • 0032991161 scopus 로고    scopus 로고
    • Analysis of deuterium relaxation-derived methyl axis order parameters and correlation with local structure
    • Mittermaier, A., Kay, L. E., and Forman-Kay, J. D. (1999) Analysis of deuterium relaxation-derived methyl axis order parameters and correlation with local structure, J. Biomol. NMR 13, 181-185.
    • (1999) J. Biomol. NMR , vol.13 , pp. 181-185
    • Mittermaier, A.1    Kay, L.E.2    Forman-Kay, J.D.3
  • 47
    • 1642416319 scopus 로고    scopus 로고
    • Probing slow dynamics in high molecular weight proteins by methyl-TROSY NMR spectroscopy: Application to a 723-residue enzyme
    • Korzhnev, D. M., Kloiber, K., Kanelis, V., Tugarinov, V., and Kay, L. E. (2004) Probing slow dynamics in high molecular weight proteins by methyl-TROSY NMR spectroscopy: Application to a 723-residue enzyme, J. Am. Chem. Soc. 126, 3964-3973.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 3964-3973
    • Korzhnev, D.M.1    Kloiber, K.2    Kanelis, V.3    Tugarinov, V.4    Kay, L.E.5
  • 49
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M., and Wüthrich, K. (1996) MOLMOL: A program for display and analysis of macromolecular structures, J. Mol. Graphics 14, 51-55.
    • (1996) J. Mol. Graphics , vol.14 , pp. 51-55
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3
  • 50
    • 84906393702 scopus 로고
    • NMR order parameters and free energy. An analytic approach and application to cooperative calcium binding by calbindin D9k
    • Akke, M., Brüschweiler, R., and Palmer, A. (1993) NMR order parameters and free energy. An analytic approach and application to cooperative calcium binding by calbindin D9k, J. Am. Chem. Soc. 115, 9832-9833.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 9832-9833
    • Akke, M.1    Brüschweiler, R.2    Palmer, A.3
  • 51
    • 0030601792 scopus 로고    scopus 로고
    • Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: Application to protein folding
    • Yang, D., and Kay, L. E. (1996) Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: Application to protein folding, J. Mol. Biol. 263, 369-382.
    • (1996) J. Mol. Biol. , vol.263 , pp. 369-382
    • Yang, D.1    Kay, L.E.2
  • 52
    • 0033988897 scopus 로고    scopus 로고
    • Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex
    • Lee, A. L., Kinnear, S. A., and Wand, A. J. (2000) Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex, Nat. Struct. Biol. 7, 72-77.
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 72-77
    • Lee, A.L.1    Kinnear, S.A.2    Wand, A.J.3


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