Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata

Genes and Genetic Systems

Volumn 76, Issue 5, 2001, Pages 311-325

  Sumida, Masayuki ^a   Kanamori, Yasushi ^a   Kaneda, Hideki ^b   Kato, Yoji ^a   Nishioka, Midori ^a,d   Hasegawa, Masami ^c   Yonekawa, Hiromichi ^b  

^a HIROSHIMA UNIVERSITY   (Japan)

^b TOKYO METROPOLITAN INSTITUTE OF MEDICAL SCIENCE   (Japan)

^c INSTITUTE OF STATISTICAL MATHEMATICS   (Japan)

^d HIROSHIMA INTERNATIONAL UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFER RNA;

AMINO ACID COMPOSITION; AMPHIBIA; ARTICLE; CODON USAGE; CONTROLLED STUDY; DNA BASE COMPOSITION; FROG; GENE DELETION; GENE DUPLICATION; GENE REARRANGEMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; RNA STRUCTURE; XENOPUS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CODON; DNA, MITOCHONDRIAL; FEMALE; GENE DELETION; JAPAN; MOLECULAR SEQUENCE DATA; MUTATION; PHYLOGENY; RANIDAE; RNA, RIBOSOMAL; RNA, TRANSFER; SEQUENCE ANALYSIS, DNA; TANDEM REPEAT SEQUENCES; XENOPUS LAEVIS;

AMPHIBIA; ANURA; CAECILIA; RANA NIGROMACULATA; VERTEBRATA;

EID: 0035203374     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.76.311     Document Type: Article

References (81)

1. Model of amino acid substitution in proteins encoded by mitochondrial DNA
2. Instability of quartet analyses of molecular sequence data by the maximum likelihood method: The Cetacea/Artiodactyla relationships
3. Sequence and organization of the human mitochondrial genome
4. Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome
5. The complete mitochondrial DNA sequence of the harbor seal. Phoca vitulina
6. The complete nucleotide sequence of the mitochondrial DNA of the fin whale. Balaenoptera physalus
7. Sequence and gene organization of mouse mitochondrial DNA
8. Animal mitochondrial genomes
9. The mitochondrial genome of animals
10. The complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of Paracentrotus lividus
11. The complete mitochondrial DNA sequence of the shark (Mustelus manazo): Evaluating rooting contradictions to living bony vertebrates
12. Phylogenetic position of turtles among amniotes: Evidence from mitochondrial and nuclear genes
13. The complete nucleotide sequence and gene organization of Carp (Cyprinus carpio) mitochondrial genome
14. Sequence and gene organization of the chicken mitochondrial genome: A novel gene order in higher vertebrates
15. Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome
16. Molecular evidence for the early history of living amphibians
17. Cases in which parsimony and compatibility methods will be positively misleading
18. Cloning of the mitochondrial genome of Rana catesbeiana and the nucleotide sequence of the ND2 and five tRNA genes
19. The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: Cryptic signals revealed by comparative analysis between vertebrates
20. Artemia mitochondrial genome: Molecular biology and evolutive considerations
21. The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds
22. A molecular phylogeny of reptiles
23. Both the conserved and divergent 5′-flanking sequences are required for initiation at the human mitochondrial origin of light strand replication
24. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia and Eutheria
25. Complete mitochondrial DNA sequence of Conger myriaster (Teleostei: Anguillioformes): Novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform families
26. The marsupial mitochondrial genome and the evolution of placental mammals
27. The mitochondrial genome of monotreme. Platypus (Ornitorhynchus anatinus)
28. The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome
29. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
30. Maximum likelihood inference of protein phylogeny, and the origin of chloroplasts
31. Variation in mitochondrial tRNA gene organization of reptiles as phylogenetic markers
32. Complete mitochondrial DNA sequences of the green turtle and blue-tailed mole skink: Statistical evidence for archosaurian affinity of turtles
33. Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: Early establishment of the vertebrate genome organization
34. Slipped-strand mispairing: A major mechanism for DNA sequence evolution
35. Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome
36. Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
37. Molecular phylogenetics of Western North American frogs of the Rana boylii species group
38. Interordinal relationships of birds and other reptiles based on whole mitochondrial genomes
39. Organization of the mitochondrial genome of a deep-sea fish Gonostoma gracile (Teleostei: Stomiiformes): First example of transfer RNA gene rearrangements in bony fishes
40. Tandem duplications of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA
41. Tandem duplications in animal mitochondrial DNAs: Variation in incidence and gene content among lizards
42. Evolution of animal mitochondrial DNA: Relevance for population biology and systematics
43. The phylogenetic position of the Talpidae within Eutheria based on analysis of complete mitochondrial sequences
44. The primary and secondary structures of the ribosomal RNAs of Rana catesbeiana
45. Monophyletic origin of the order Chiroptera and its phylogenetic position among Mammalia, as inferred from the complete sequence of the mitochondrial DNA of a Japanese megabat, the Ryukyu flying fox (Pteropus dasymallus)
46. Maximum likelihood analysis of the complete mitochondrial genomes of eutherians and a reevaluation of the phylogeny of bats and insectivores
47. Rearrangements of mitochondrial transfer RNA genes in marsupials
48. Complete mitochondrial genome of a neotropical fruit bat. Artibeus jamaicensis, and a new hypothesis of the relationships of bats to other eutherian mammals
49. Sequence evolution in and around the mitochondrial control region in birds
50. Phylogenetic studies of complete mitochondrial DNA molecules place cartilaginous fishes within the tree of bony fishes
51. Molecular studies suggest that cartilaginous fishes have a terminal position in the piscine tree
52. The complete nucleotide sequence of the Xenopus laevis mitochondrial genome
53. The polytypic species revisited: Genetic differentiation and molecular phylogenetic of the tiger salamander Ambystoma tigrinum (Amphibia: Caudata) complex
54. Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA
55. Quartet puzzling: A quartet maximum- likelihood method for reconstructing tree topologies
56. Inheritance of mitochondrial DNAs and allzymes in the female hybrid lineages of two Japanese pond frog species
57. Evolutionary relationships among Japanese pond frogs inferred from mitochondrial DNA sequences of cytochorome b and 12S ribosomal RNA genes
58. Sex-linked genes and linkage maps in amphibians
59. Molecular phylogenetic relationships of pond frogs distributed in the Palearctic region inferred from DNA sequences of mitochondrial 12S ribosomal RNA and cytochrome b genes
60. Sequence variation and structural conservation in the D-loop region and flanking genes of mitochondrial DNA from Japanese pond frogs
61. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
62. The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: Conservation and variations among vertebrates
63. The complete mitochondrial DNA sequence of the pig (Sus scrofa)
64. Amphibian locomotion in evolutionary time
65. Animal mitochondrial DNA: Structure and evolution
66. Sequence evolution of Drosophila mitochondrial DNA
67. The complete mitochondrial DNA sequence of the horse. Equus caballus: Extensive heteroplasmy of the control region
68. The complete mitochondrial DNA sequence of the white rhinoceros. Ceratotherium simum, and comparison with the mtDNA sequence of the Indian rhinoceros, Rhinoceros unicornis
69. The complete mitochondrial DNA sequence of the greater Indian rhinocerus. Rhinocerus unicornis, and the phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea)
70. Among-site rate variation and its impact on phylogenetic analyses
71. PAML: A program package for phylogenetic analysis by maximum likelihood
72. Variation in mitochondrial DNA and population structure of the Taipei treefrog Rhacophorus taipeianus in Taiwan
73. The nucleotide sequences of the heavy and light strand replication origins of the Rana catesbeiana mitochondrial genome
74. The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates
75. The complete DNA sequence of the mitochondrial genome of a "living fossil," the coelacanth (Latimeria chalumnae)
76. Complete mitochondrial genome suggests diapsid affinities of turtles
77. Mitochondrial evidence on the phylogenetic position of caecilians (Amphibia: Gymnophiona)
78. The complete nucleotide sequence of the mitochondrial DNA genome of the rainbow trout. Oncorhynchus mykiss
79. Searching for the closest living relative(s) of tetrapods through evolutionary analyses of mitochondrial and nuclear data