-
1
-
-
0034785443
-
Identifying regulatory networks by combinatorial analysis of promoter elements
-
Pilpel Y, Sudarsanam P, Church GM: Identifying regulatory networks by combinatorial analysis of promoter elements. Nature Genet 2001, 29:153-159.
-
(2001)
Nature Genet.
, vol.29
, pp. 153-159
-
-
Pilpel, Y.1
Sudarsanam, P.2
Church, G.M.3
-
2
-
-
0026738749
-
Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human gamma and epsilon globin genes
-
Gumucio DL, Heilstedt-Williamson H, Gray TA, Tarle SA, Shelton DA, Tagle DA, Slightom JL, Goodman M, Collins FS: Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human gamma and epsilon globin genes. Mol Cell Biol 1992, 12:4919-4929.
-
(1992)
Mol. Cell Biol.
, vol.12
, pp. 4919-4929
-
-
Gumucio, D.L.1
Heilstedt-Williamson, H.2
Gray, T.A.3
Tarle, S.A.4
Shelton, D.A.5
Tagle, D.A.6
Slightom, J.L.7
Goodman, M.8
Collins, F.S.9
-
3
-
-
0041903634
-
Identification of conserved regulatory elements by comparative genome analysis
-
Lenhard B, Sandelin A, Mendoza L, Engström P, Jareborg N, Wasserman WW: Identification of conserved regulatory elements by comparative genome analysis. J Biol 2003, 2:13.
-
(2003)
J. Biol.
, vol.2
, pp. 13
-
-
Lenhard, B.1
Sandelin, A.2
Mendoza, L.3
Engström, P.4
Jareborg, N.5
Wasserman, W.W.6
-
4
-
-
1542376789
-
Eukaryotic regulatory element conservation analysis and identification using comparative genomics
-
Liu Y, Liu XS, Wei L, Altman RB, Batzoglou S: Eukaryotic regulatory element conservation analysis and identification using comparative genomics. Genome Res 2004, 14:451-458.
-
(2004)
Genome Res.
, vol.14
, pp. 451-458
-
-
Liu, Y.1
Liu, X.S.2
Wei, L.3
Altman, R.B.4
Batzoglou, S.5
-
5
-
-
3242891274
-
ConSite: Web-based prediction of regulatory elements using cross-species comparison
-
Sandelin A., Wasserman WW, Lenhard B: ConSite: web-based prediction of regulatory elements using cross-species comparison. Nucleic Acids Res 2004, 32:W249-W252.
-
(2004)
Nucleic. Acids Res.
, vol.32
-
-
Sandelin, A.1
Wasserman, W.W.2
Lenhard, B.3
-
6
-
-
0033775978
-
Human-mouse genome comparisons to locate regulatory sites
-
Wasserman WW, Palumbo M, Thompson W, Fickett JW, Lawrence CE: Human-mouse genome comparisons to locate regulatory sites. Nature Genet 2000, 26:225-228.
-
(2000)
Nature Genet.
, vol.26
, pp. 225-228
-
-
Wasserman, W.W.1
Palumbo, M.2
Thompson, W.3
Fickett, J.W.4
Lawrence, C.E.5
-
7
-
-
0346243805
-
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
-
Clark AG, Glanowski S, Nielsen R, Thomas PD, Kejariwal A, Todd MA, Tanenbaum DM, Civello D, Lu F, Murphy B, Ferriera S, Wang G, Zheng X, White TJ, Sninsky JJ, Adams MD, Cargill M: Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science 2003, 302:1960-1963.
-
(2003)
Science
, vol.302
, pp. 1960-1963
-
-
Clark, A.G.1
Glanowski, S.2
Nielsen, R.3
Thomas, P.D.4
Kejariwal, A.5
Todd, M.A.6
Tanenbaum, D.M.7
Civello, D.8
Lu, F.9
Murphy, B.10
Ferriera, S.11
Wang, G.12
Zheng, X.13
White, T.J.14
Sninsky, J.J.15
Adams, M.D.16
Cargill, M.17
-
8
-
-
11144331051
-
Accelerated evolution of nervous system genes in the origin of Homo sapiens
-
Dorus S, Vallender EJ, Evans PD, Anderson JR, Gilbert SL, Mahowald M, Wyckoff GJ, Malcom CM, Lahn BT: Accelerated evolution of nervous system genes in the origin of Homo sapiens. Cell 2004, 119:1027-1040.
-
(2004)
Cell
, vol.119
, pp. 1027-1040
-
-
Dorus, S.1
Vallender, E.J.2
Evans, P.D.3
Anderson, J.R.4
Gilbert, S.L.5
Mahowald, M.6
Wyckoff, G.J.7
Malcom, C.M.8
Lahn, B.T.9
-
9
-
-
27144539145
-
Natural selection on protein-coding genes in the human genome
-
Bustamante CD, Fledel-Alon A, Williamson S, Nielsen R, Hubisz MT, Glanowski S, Tanenbaum DM, White TJ, Sninsky JJ, Hernandez RD, Civello D, Adams MD, Cargill M, Clark AG: Natural selection on protein-coding genes in the human genome. Nature 2005, 437:1153-1157.
-
(2005)
Nature
, vol.437
, pp. 1153-1157
-
-
Bustamante, C.D.1
Fledel-Alon, A.2
Williamson, S.3
Nielsen, R.4
Hubisz, M.T.5
Glanowski, S.6
Tanenbaum, D.M.7
White, T.J.8
Sninsky, J.J.9
Hernandez, R.D.10
Civello, D.11
Adams, M.D.12
Cargill, M.13
Clark, A.G.14
-
10
-
-
0036678862
-
Waddingtons' canalization revisited: Developmental stability and evolution
-
Siegal ML, Bergman A: Waddingtons' canalization revisited: developmental stability and evolution. Proc Natl Acad Sci U S A 2002, 99:10528-10532.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 10528-10532
-
-
Siegal, M.L.1
Bergman, A.2
-
11
-
-
0034069495
-
The Gene Ontology Consortium: Gene Ontology: Tool for the unification of biology
-
The Gene Ontology Consortium: Gene Ontology: tool for the unification of biology. Nature Genet 2000, 25:25-29.
-
(2000)
Nature Genet.
, vol.25
, pp. 25-29
-
-
-
13
-
-
22144473057
-
Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes
-
Sandelin A, Bailey P, Bruce S, Engström PG, Klos JM, Wasserman WW, Ericson J, Lenhard B: Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. BMC Genomics 2004, 5:99-107.
-
(2004)
BMC Genomics
, vol.5
, pp. 99-107
-
-
Sandelin, A.1
Bailey, P.2
Bruce, S.3
Engström, P.G.4
Klos, J.M.5
Wasserman, W.W.6
Ericson, J.7
Lenhard, B.8
-
14
-
-
20044366725
-
Highly conserved non-coding sequences are associated with vertebrate development
-
Woolfe A, Goodson M, Goode DK, Snell P, McEwen GK, Vavouri T, Smith SF, North P, Callaway H, Kelly K, Walter K, Abnizova I, Gilks W, Edwards YJK, Cooke JE, Elgar G: Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol 2005, 3:e7.
-
(2005)
PLoS Biol.
, vol.3
-
-
Woolfe, A.1
Goodson, M.2
Goode, D.K.3
Snell, P.4
McEwen, G.K.5
Vavouri, T.6
Smith, S.F.7
North, P.8
Callaway, H.9
Kelly, K.10
Walter, K.11
Abnizova, I.12
Gilks, W.13
Edwards, Y.J.K.14
Cooke, J.E.15
Elgar, G.16
-
15
-
-
0034736512
-
Covariation of GC content and the silent site substitution rate in rodents: Implications for methodology and for the evolution of isochores
-
Hurst LE, Williams EJB: Covariation of GC content and the silent site substitution rate in rodents: implications for methodology and for the evolution of isochores. Gene 2000, 261:107-114.
-
(2000)
Gene
, vol.261
, pp. 107-114
-
-
Hurst, L.E.1
Williams, E.J.B.2
-
16
-
-
0036133007
-
Expected relationship between the silent substitution rate and the GC content: Implications for the evolution of isochores
-
Piganeau G, Mouchiroud D, Duret L, Gautier C: Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores. J Mol Evol 2002, 54:129-133.
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 129-133
-
-
Piganeau, G.1
Mouchiroud, D.2
Duret, L.3
Gautier, C.4
-
18
-
-
0032549745
-
Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
-
Yuh C-H, Bolouri H, Davidson EH: Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene. Science 1998, 279:1896-1902.
-
(1998)
Science
, vol.279
, pp. 1896-1902
-
-
Yuh, C.-H.1
Bolouri, H.2
Davidson, E.H.3
-
19
-
-
0041677607
-
Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation
-
Romano LA, Wray GA: Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation. Development 2003, 130:4187-4199.
-
(2003)
Development
, vol.130
, pp. 4187-4199
-
-
Romano, L.A.1
Wray, G.A.2
-
20
-
-
0036737595
-
Deterministic mutation rate variation in the human genome
-
Smith NGC, Webster MT, Ellegren H: Deterministic mutation rate variation in the human genome. Genome Res 2002,12:1350-1356.
-
(2002)
Genome Res.
, vol.12
, pp. 1350-1356
-
-
Smith, N.G.C.1
Webster, M.T.2
Ellegren, H.3
-
21
-
-
51149203927
-
Canalization of development and the inheritance of acquired characters
-
Waddington CH: Canalization of development and the inheritance of acquired characters. Nature 1942, 150:563-565.
-
(1942)
Nature
, vol.150
, pp. 563-565
-
-
Waddington, C.H.1
-
22
-
-
19344364657
-
Channelling evolution: Canalization and the nervous system
-
Niven JE: Channelling evolution: canalization and the nervous system. PLoS Biol 2004, 2:e19.
-
(2004)
PLoS Biol.
, vol.2
-
-
Niven, J.E.1
-
23
-
-
14644405053
-
Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence
-
Chin C, Chuang JH, Li H: Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence. Genome Res 2005, 15:205-213.
-
(2005)
Genome Res.
, vol.15
, pp. 205-213
-
-
Chin, C.1
Chuang, J.H.2
Li, H.3
-
24
-
-
1642512326
-
Transcriptional regulation and the evolution of development
-
Wary GA: Transcriptional regulation and the evolution of development. Int J Dev Biol 2003, 47:7-8.
-
(2003)
Int. J. Dev. Biol.
, vol.47
, pp. 7-8
-
-
Wary, G.A.1
-
25
-
-
28844505822
-
-
The UCSC Genome Browser
-
The UCSC Genome Browser [http://genome.ucsc.edu].
-
-
-
|