The chicken genome and the developmental biologist

Mechanisms of Development

Volumn 121, Issue 9, 2004, Pages 1129-1135

  Burt, David W ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

Comparative genomics; Databases; Evolution; Genome; Model

Indexed keywords

AGRICULTURE; BIOINFORMATICS; CHICK EMBRYO; EMBRYO DEVELOPMENT; EVOLUTION; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE MAPPING; GENE SEQUENCE; GENETIC MARKER; GENETIC ORGANIZATION; GENETIC REGULATION; GENOME; KARYOTYPE; MODEL; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEOMICS; REVIEW; SINGLE NUCLEOTIDE POLYMORPHISM; VERTEBRATE;

ANIMALS; CHICK EMBRYO; CHICKENS; DEVELOPMENTAL BIOLOGY; DNA, COMPLEMENTARY; EVOLUTION, MOLECULAR; EXPRESSED SEQUENCE TAGS; GENOME; KARYOTYPING;

GALLUS GALLUS; VERTEBRATA;

EID: 3543110787     PISSN: 09254773     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mod.2004.04.020     Document Type: Review

References (37)

1. Abdrakhmanov I., Lodygin D., Geroth P., Arakawa H., Law A., Plachy J., et al. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Genome Res. 10:2000;2062-2069
2. Aerts J., Crooijmans R., Cornelissen S., Hemmatian K., Veenendaal T., Jaadar A., et al. Integration of chicken genomic resources to enable whole-genome sequencing. Cytogenet. Genome Res. 102:2003;297-303
3. Ben-Ari G., David L., Blum S., Twito T., Vignal A., Weigend S., et al. Single nucleotide polymorphism (SNPs) in chicken: resources and possible applications. Cytogenet. Gen. Res. 2004;. in press
4. Boardman P.E., Sanz-Ezquerro J., Overton I.M., Burt D.W., Bosch E., Fong W.T., et al. A comprehensive collection of chicken cDNAs. Curr. Biol. 12:2002;1965-1969
5. Brown W., Hubbard S.J., Tickle C.A., Wilson S.W. The chicken as a model for large-scale analysis of vertebrate gene function. Nat. Rev. Genet. 4:2003;87-98
6. Buitenhuis A.J., Crooijmans R.P.M.A., Bruijnesteijn van Coppenraet A., Veenedaal M.A.M., Groenen M.A.M., van der Poel J.J. Improvement of the comparative map of chicken chromosome 13. Anim. Genet. 33:2002;249-254
7. Burt D.W. Origin and evolution of avian microchromosomes. Cytogenet. Genome Res. 96:2002;97-112
8. Burt D.W., Pourquié O. Chicken genome - science nuggets to come soon. Science. 300:2003;1669
9. Crittenden L.B., Provencher L., Santangelo L., Levin I., Abplanalp H., Briles R.W., et al. Characterisation of a red jungle fowl by white Leghorn backcross reference population for molecular mapping of the chicken genome. Poult. Sci. 72:1993;334-348
10. Crooijmans R.P.M.A., Vrebalov J., Dijkhof R.J.M., van der Poel J.J., Groenen M.A.M. Two-dimensional screening of the Wageningen chicken BAC library'. Mamm. Genome. 11:2000;360-363
11. Crooijmans R.P.M.A., Dijkhof R.J.M., Veenendaal T., van der Poel J.J., Nicholls R.D., Groenen M.A.M. The gene orders on human chromosome 15 and chicken chromosome 10 reveal multiple inter- and intrachromosomal rearrangements. Mol. Biol. Evol. 18:2001;2102-2109
12. Davidson D., Baldock R. Bioinformatics beyond sequence: mapping gene function in the embryo. Nat. Rev. Genet. 2:2002;409-417
13. Emara M.G., Kim H. Genetic markers and their application in poultry breeding. Poult. Sci. 82:2003;952-957
14. Fillon V., Vignoles M., Garrigues A., Pitel F., Morisson M., Crooijmans R.P., et al. The chicken cytogenetic map: an aid to microchromosome identification and avian comparative cytogenetics. Br. Poult. Sci. 44:2003;795-797
15. Flint J., Tufarelli C., Peden J., Clark K., Daniels R.J., Hardison R., et al. Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster. Hum. Mol. Genet. 10:2001;371-382
16. Göttgens B., Barton L.M., Gilbert J.G., Bench A.J., Sanchez M.J., Bahn S., et al. Analysis of vertebrate SCL loci identifies conserved enhancers'. Nat. Biotechnol. 18:2000;181-186
17. Groenen M.A.M., Crooijmans R.P.M.A. Structural genomics: integrating linkage, physical and sequence maps. Muir W.M., Aggrey S.E. Poultry Breeding and Biotechnology. 2003;497-536 CABI International
18. Huang X., Wang J., Aluru S., Yang S.P., Hillier L. PCAP: a whole-genome assembly program. Genome Res. 13:2003;2164-2170
19. Hutt F.B. Genetics of the fowl. VI. A tentative chromosome map. Neue Forschung für Tierzucht und Abstammung. (Duerst Festschrift). 1936;. pp. 105-112
20. Jennen D.G.J., Crooijmans R.P.M.A., Kamps B., Acar R., Veenendaal A., Van der Poel J.J., Groenen M.A.M. A comparative map of chicken chromosome 24 and human chromosome 11. Anim. Genet. 33:2002;205-210
21. Jennen D.G., Crooijmans R.P., Morisson M., Grootemaat A.E., Van Der Poel J.J., Vignal A., Groenen M.A. A radiation hybrid map of chicken chromosome 15. Anim. Genet. 35:2004;63-65
22. Kaufman J., Milne S., Gobel T.W., Walker B.A., Jacob J.P., Auffray C., et al. The chicken B locus is a minimal essential major histocompatibility complex. Nature. 401:1999;923-925
23. Lee M.K., Ren C.W., Yan B., Cox B., Zhang H.B., Romanov M.N., et al. Construction and characterization of three BAC libraries for analysis of the chicken genome'. Anim. Genet. 34:2003;151-152
24. Levin I., Santangelo L., Cheng H.H., Crittenden L.B., Dodgson J.B. An autosomal linkage map of the chicken. J. Hered. 85:1994;79-85
25. Masabanda J.S., Burt D.W., O'Brien P.C.M., Vignal A., Fillon V., Walsh P.S., et al. Molecular cytogenetic definition of the chicken genome: the first complete avian karyotype. Genetics. 166:2004;1367-1373
26. McQueen H.A., Fantes J., Cross S.H., Clark V.H., Archibald A.L. CpG islands of chicken are concentrated on microchromosomes. Nat. Genet. 12:1996;321-324
27. Morisson M., Lemiere A., Bosc S., Galan M., Plisson-Petit F., Pinton P., et al. ChickRH6: a chicken whole-genome radiation hybrid panel. Genet. Sel. Evol. 34:2002;521-533
28. Morisson M., Jiguet-Jiglaire C., Lemiere A., Leroux S., Faraut T., Yerle M., Vignal A. A radiation hybrid panel and its use in developing a gene map of the chicken. Br. Poult. Sci. 44:2003;797-798
29. Pekarik V., Bourikas D., Miglino N., Joset P., Preiswerk S., Stoeckli E.T. Screening for gene function in chicken embryo using RNAi and electroporation. Nat. Biotechnol. 21:2003;93-96
30. Reboul J., Gardiner K., Monneron D., Uze G., Lutfalla G. Comparative genomic analysis of the interferon/interleukin-10 receptor gene cluster. Genome Res. 9:1999;242-250
31. Ren C., Lee M.-K., Yan B., Ding K., Cox B., Romanov M.N., et al. A BAC-based physical map of the chicken genome'. Genome Res. 13:2003;2754-2758
32. Romanov M.N., Price J.A., Dodgson J.B. Integration of animal linkage and BAC contig maps using overgo hybridisation. Cytogenet. Genome Res. 102:2003;277-281
33. Schmid M., Nanda I., Guttenbach M., Steinlein C., Hoehn H., Schartl M., et al. First report on chicken genes and chromosomes 2000. Cytogenet. Cell Genet. 94:2001;169-218
34. Smith J., Bruley C.K., Paton I.R., Dunn I., Jones C.T., Windsor D., et al. Differences in gene density on the chicken macrochromosomes and microchromosomes: a tool for gene discovery in vertebrate genomes. Anim. Genet. 31:2000;96-103
35. Tirunagaru V.G., Sofer L., Cui J., Burnside J. An expressed sequence tag database of T-cell-enriched activated chicken splenocytes: sequence analysis of 5251 clones. Genomics. 66:2000;144-151
36. Ui-Tei K., Naito Y., Takahashi F., Haraguchi T., Ohki-Hamazaki H., Juni A., et al. Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference. Nucleic Acids Res. 32:2003;936-948
37. Wang K., Gan L., Kuo C.L., Hood L. A highly conserved apoptotic suppressor gene is located near the chicken T-cell receptor alpha chain constant region. Immunogenetics. 46:1997;376-382