-
1
-
-
0030963424
-
Fast events in protein folding: Relaxation dynamics of secondary and tertiary structure in native apomyoglobin
-
Gilmanshin, R., Williams, S., Callender, R. H., Woodruff, W. H., and Dyer, R. B. (1997) Fast events in protein folding: Relaxation dynamics of secondary and tertiary structure in native apomyoglobin, Proc. Natl. Acad. Sci. U.S.A. 94, 3709-3713.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 3709-3713
-
-
Gilmanshin, R.1
Williams, S.2
Callender, R.H.3
Woodruff, W.H.4
Dyer, R.B.5
-
2
-
-
0037022567
-
Helix formation via conformation diffusion search
-
Huang, C.-Y., Getahun, Z., Zhu, Y. J., Klernke, J. W., DeGrado, W. F., and Gai, F. (2002) Helix formation via conformation diffusion search, Proc. Natl. Acad. Sci. U.S.A. 99, 2788-2793.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 2788-2793
-
-
Huang, C.-Y.1
Getahun, Z.2
Zhu, Y.J.3
Klernke, J.W.4
DeGrado, W.F.5
Gai, F.6
-
3
-
-
0029973119
-
Direct observation of fast protein folding: The initial collapse of apomyoglobin
-
Ballew, R. M., Sabelko, J., and Gruebele, M. (1996) Direct observation of fast protein folding: The initial collapse of apomyoglobin, Proc. Natl. Acad. Sci. U.S.A. 93, 5759-5764.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 5759-5764
-
-
Ballew, R.M.1
Sabelko, J.2
Gruebele, M.3
-
4
-
-
0030789351
-
Laser temperature jump study of the helix-coil kinetics of an alanine peptide interpreted with a "kinetic zipper" model
-
Thompson, P. A., Eaton, W. A., and Hofrichter, J. (1997) Laser temperature jump study of the helix-coil kinetics of an alanine peptide interpreted with a "kinetic zipper" model, Biochemistry 36, 9200-9210.
-
(1997)
Biochemistry
, vol.36
, pp. 9200-9210
-
-
Thompson, P.A.1
Eaton, W.A.2
Hofrichter, J.3
-
5
-
-
0033612010
-
Nanosecond UV resonance Raman examination of initial steps in α-helix secondary structure evolution
-
Lednev, I. K., Karnoup, A. S., Sparrow, M. C., and Asher, S. A. (1999) Nanosecond UV resonance Raman examination of initial steps in α-helix secondary structure evolution, J. Am. Chem. Soc. 121, 4076-4077.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 4076-4077
-
-
Lednev, I.K.1
Karnoup, A.S.2
Sparrow, M.C.3
Asher, S.A.4
-
6
-
-
33845184241
-
Deep-ultraviolet Raman excitation profiles and vibronic scattering mechanisms of phenylalanine, tyrosine, and tryptophan
-
Fodor, S. P. A., Copeland, R. A., Grygon, C. A., and Spiro, T. G. (1989) Deep-ultraviolet Raman excitation profiles and vibronic scattering mechanisms of phenylalanine, tyrosine, and tryptophan, J. Am. Chem. Soc. 111, 5509-5518.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 5509-5518
-
-
Fodor, S.P.A.1
Copeland, R.A.2
Grygon, C.A.3
Spiro, T.G.4
-
7
-
-
0023661664
-
Secondary structure determination in proteins from deep (192-223 nm) ultraviolet Raman spectroscopy
-
Copeland, R. A., and Spiro, T. G. (1987) Secondary structure determination in proteins from deep (192-223 nm) ultraviolet Raman spectroscopy, Biochemistry 26, 2134-2139.
-
(1987)
Biochemistry
, vol.26
, pp. 2134-2139
-
-
Copeland, R.A.1
Spiro, T.G.2
-
8
-
-
0027515699
-
Protein structure from ultraviolet resonance Raman spectroscopy
-
Austin, J. C., Rodgers, K. R., and Spiro, T. G. (1993) Protein structure from ultraviolet resonance Raman spectroscopy, Methods Enzymol. 226, 374-396.
-
(1993)
Methods Enzymol.
, vol.226
, pp. 374-396
-
-
Austin, J.C.1
Rodgers, K.R.2
Spiro, T.G.3
-
10
-
-
0033363464
-
Solid-state tunable kHz ultraviolet laser for Raman applications
-
Zhao, X. J., Chen, R. P., Tengroth, C., and Spiro, T. G. (1999) Solid-state tunable kHz ultraviolet laser for Raman applications, Appl. Spectrosc. 53, 1200-1205.
-
(1999)
Appl. Spectrosc.
, vol.53
, pp. 1200-1205
-
-
Zhao, X.J.1
Chen, R.P.2
Tengroth, C.3
Spiro, T.G.4
-
11
-
-
0039700825
-
Time-resolved Raman spectroscopy with a tunable ultraviolet kilohertz nanosecond laser
-
Zhao, X. J., Tengroth, C., Chen, R. P., Simpson, W. R., and Spiro, T. G. (1999) Time-resolved Raman spectroscopy with a tunable ultraviolet kilohertz nanosecond laser, J. Raman Spectrosc. 30, 773-776.
-
(1999)
J. Raman Spectrosc.
, vol.30
, pp. 773-776
-
-
Zhao, X.J.1
Tengroth, C.2
Chen, R.P.3
Simpson, W.R.4
Spiro, T.G.5
-
12
-
-
21244457185
-
Tunable kHz deep ultraviolet (193-210 nm) laser for Raman applications
-
Balakrishnan, G., Hu, Y., Nielsen, S. B., and Spiro, T. G. (2005) Tunable kHz deep ultraviolet (193-210 nm) laser for Raman applications, Appl. Spectrosc. 59, 776-781.
-
(2005)
Appl. Spectrosc.
, vol.59
, pp. 776-781
-
-
Balakrishnan, G.1
Hu, Y.2
Nielsen, S.B.3
Spiro, T.G.4
-
13
-
-
32044452490
-
Protein secondary structure from deep UV resonance Raman spectroscopy
-
in press
-
Huang, C.-Y., Balakrishnan, G., and Spiro, T. G. (2005) Protein secondary structure from deep UV resonance Raman spectroscopy, J. Raman Spectrosc. (in press).
-
(2005)
J. Raman Spectrosc.
-
-
Huang, C.-Y.1
Balakrishnan, G.2
Spiro, T.G.3
-
14
-
-
0030575785
-
Is apomyoglobin a molten globule? Structural characterization by NMR
-
Eliezer, D., and Wright, P. E. (1996) Is apomyoglobin a molten globule? Structural characterization by NMR, J. Mol. Biol. 263, 531-538.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 531-538
-
-
Eliezer, D.1
Wright, P.E.2
-
15
-
-
0030056766
-
The native state of apomyoglobin described by proton NMR spectroscopy: The A-B-G-H interface of wild-type sperm whale apomyoglobin
-
Lecomte, J. T. J., Kao, Y. H., and Cocco, M. J. (1996) The native state of apomyoglobin described by proton NMR spectroscopy: The A-B-G-H interface of wild-type sperm whale apomyoglobin, Proteins 25, 267-285.
-
(1996)
Proteins
, vol.25
, pp. 267-285
-
-
Lecomte, J.T.J.1
Kao, Y.H.2
Cocco, M.J.3
-
16
-
-
0030866261
-
Structural heterogeneity of the various forms of apomyoglobin: Implications for protein folding
-
Gilmanshin, R., Dyer, R. B., and Callender, R. H. (1997) Structural heterogeneity of the various forms of apomyoglobin: Implications for protein folding, Protein Sci. 6, 2134-2142.
-
(1997)
Protein Sci.
, vol.6
, pp. 2134-2142
-
-
Gilmanshin, R.1
Dyer, R.B.2
Callender, R.H.3
-
17
-
-
0034696675
-
Native and non-native secondary structure and dynamics in the pH 4 intermediate of apomyoglobin
-
Eliezer, D., Chung, J., Dyson, H. J., and Wright, P. E. (2000) Native and non-native secondary structure and dynamics in the pH 4 intermediate of apomyoglobin, Biochemistry 39, 2894-2901.
-
(2000)
Biochemistry
, vol.39
, pp. 2894-2901
-
-
Eliezer, D.1
Chung, J.2
Dyson, H.J.3
Wright, P.E.4
-
18
-
-
0025186451
-
Structural characterization of a partly folded apomyoglobin intermediate
-
Hughson, F. M., Wright, P. E., and Baldwin, R. L. (1990) Structural characterization of a partly folded apomyoglobin intermediate, Science 249, 1544-1548.
-
(1990)
Science
, vol.249
, pp. 1544-1548
-
-
Hughson, F.M.1
Wright, P.E.2
Baldwin, R.L.3
-
19
-
-
0031932824
-
Structural and dynamic characterization of partially folded states of apomyoglobin and implications for protein folding
-
Eliezer, D., Yao, J., Dyson, H. J., and Wright, P. E. (1998) Structural and dynamic characterization of partially folded states of apomyoglobin and implications for protein folding, Nat. Struct. Biol. 5, 148-155.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 148-155
-
-
Eliezer, D.1
Yao, J.2
Dyson, H.J.3
Wright, P.E.4
-
20
-
-
0035339911
-
Core formation in apomyoglobin: Probing the upper reaches of the folding energy landscape
-
Gulotta, M., Gilmanshin, R., Buscher, T. C., Callender, R. H., and Dyer, R. B. (2001) Core formation in apomyoglobin: Probing the upper reaches of the folding energy landscape, Biochemistry 40, 5137-5143.
-
(2001)
Biochemistry
, vol.40
, pp. 5137-5143
-
-
Gulotta, M.1
Gilmanshin, R.2
Buscher, T.C.3
Callender, R.H.4
Dyer, R.B.5
-
21
-
-
49749199032
-
Cleavage of the haem-protein link by acid methylethyl ketone
-
Teale, F. W. J. (1959) Cleavage of the haem-protein link by acid methylethyl ketone, Biochim. Biophys. Acta 35, 543-543.
-
(1959)
Biochim. Biophys. Acta
, vol.35
, pp. 543-543
-
-
Teale, F.W.J.1
-
22
-
-
0017831702
-
Physical methods for the study of myoglobin
-
Rothgeb, T. M., and Gurd, F. R. N. (1978) Physical methods for the study of myoglobin, Methods Enzymol. 52, 473-486.
-
(1978)
Methods Enzymol.
, vol.52
, pp. 473-486
-
-
Rothgeb, T.M.1
Gurd, F.R.N.2
-
23
-
-
0014109212
-
Spectroscopic determination of tryptophan and tyrosine in proteins
-
Edelhoch, H. (1967) Spectroscopic determination of tryptophan and tyrosine in proteins, Biochemistry 6, 1948-1954.
-
(1967)
Biochemistry
, vol.6
, pp. 1948-1954
-
-
Edelhoch, H.1
-
24
-
-
0034672325
-
Estimation of protein secondary structure from circular dichroism spectra: Comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set
-
Sreerama, N., and Woody, R. W. (2000) Estimation of protein secondary structure from circular dichroism spectra: Comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set, Anal. Biochem. 287, 252-260.
-
(2000)
Anal. Biochem.
, vol.287
, pp. 252-260
-
-
Sreerama, N.1
Woody, R.W.2
-
25
-
-
0000907487
-
Direct observations of ligand dynamics in hemoglobin by subpicosecond infrared spectroscopy
-
Anfinrud, P. A., Han, C., and Hochstrasser, R. M. (1989) Direct observations of ligand dynamics in hemoglobin by subpicosecond infrared spectroscopy, Proc. Natl. Acad. Sci. U.SA. 86, 8387-8391.
-
(1989)
Proc. Natl. Acad. Sci. U.SA.
, vol.86
, pp. 8387-8391
-
-
Anfinrud, P.A.1
Han, C.2
Hochstrasser, R.M.3
-
26
-
-
0035340960
-
Structures of apomyoglobin's various acid-destabilized forms
-
Gilmanshin, R., Gulotta, M., Dyer, R. B., and Callender, R. H. (2001) Structures of apomyoglobin's various acid-destabilized forms, Biochemistry 40, 5127-5136.
-
(2001)
Biochemistry
, vol.40
, pp. 5127-5136
-
-
Gilmanshin, R.1
Gulotta, M.2
Dyer, R.B.3
Callender, R.H.4
-
27
-
-
0003335955
-
-
Fasman, G. D., Ed. Plenum Press, New York
-
Woody, R. W. (1996) in Circular Dichroism and the Conformational Analysis of Biomolecules (Fasman, G. D., Ed.) pp 25-68, Plenum Press, New York.
-
(1996)
Circular Dichroism and the Conformational Analysis of Biomolecules
, pp. 25-68
-
-
Woody, R.W.1
-
28
-
-
0037065773
-
Comparison between UV Raman and circular dichroism detection of short α helices in Bombolitin III
-
Ozdemir, A., Lednev, I. K., and Asher, S. A. (2002) Comparison between UV Raman and circular dichroism detection of short α helices in Bombolitin III, Biochemistry 41, 1893-1896.
-
(2002)
Biochemistry
, vol.41
, pp. 1893-1896
-
-
Ozdemir, A.1
Lednev, I.K.2
Asher, S.A.3
-
29
-
-
0033614784
-
Ultraviolet resonance Raman examination of horse apomyoglobin acid unfolding intermediates
-
Chi, Z. H., and Asher, S. A. (1999) Ultraviolet resonance Raman examination of horse apomyoglobin acid unfolding intermediates, Biochemistry 38, 8196-8203.
-
(1999)
Biochemistry
, vol.38
, pp. 8196-8203
-
-
Chi, Z.H.1
Asher, S.A.2
-
30
-
-
0025763973
-
Fluorescence study of the conformational properties of myoglobin structure. 1. pH-dependent changes of tryptophanyl fluorescence in intact and chemically modified sperm whale apomyoglobins
-
Postnikova, G. B., Komarov, Y. E., and Yumakova, E. M. (1991) Fluorescence study of the conformational properties of myoglobin structure. 1. pH-dependent changes of tryptophanyl fluorescence in intact and chemically modified sperm whale apomyoglobins, Eur. J. Biochem. 198, 223-232.
-
(1991)
Eur. J. Biochem.
, vol.198
, pp. 223-232
-
-
Postnikova, G.B.1
Komarov, Y.E.2
Yumakova, E.M.3
-
31
-
-
0034903732
-
Structural study on acid-induced unfolding intermediates of myoglobin by using UV resonance Raman scattering from tryptophan residues
-
Hashimoto, S., Fukasaka, J., and Takeuchi, H. (2001) Structural study on acid-induced unfolding intermediates of myoglobin by using UV resonance Raman scattering from tryptophan residues, J. Raman Spectrosc. 32, 557-563.
-
(2001)
J. Raman Spectrosc.
, vol.32
, pp. 557-563
-
-
Hashimoto, S.1
Fukasaka, J.2
Takeuchi, H.3
-
33
-
-
0037154268
-
Protein folding mediated by solvation: Water expulsion and formation of the hydrophobic core occur after the structural collapse
-
Cheung, M. S., Garcia, A. E., and Onuchic, J. N. (2002) Protein folding mediated by solvation: Water expulsion and formation of the hydrophobic core occur after the structural collapse, Proc. Natl. Acad. Sci. U.S.A. 99, 685-690.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 685-690
-
-
Cheung, M.S.1
Garcia, A.E.2
Onuchic, J.N.3
-
34
-
-
0030900199
-
NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions
-
Zhang, O. W., and Forman-Kay, J. D. (1997) NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions, Biochemistry 36, 3959-3970.
-
(1997)
Biochemistry
, vol.36
, pp. 3959-3970
-
-
Zhang, O.W.1
Forman-Kay, J.D.2
-
35
-
-
0033546123
-
NOE data demonstrating a compact unfolded state for an SH3 domain under non-denaturing conditions
-
Mok, Y. K., Kay, C. M., Kay, L. E., and Forman-Kay, J. (1999) NOE data demonstrating a compact unfolded state for an SH3 domain under non-denaturing conditions, J. Mol. Biol. 289, 619-638.
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 619-638
-
-
Mok, Y.K.1
Kay, C.M.2
Kay, L.E.3
Forman-Kay, J.4
-
36
-
-
0027131947
-
Fast events in protein folding initiated by nanosecond laser photolysis
-
Jones, C., Henry, E., Hu, Y., Chan, C., Luck, S., Bhuyan, A., Roder, H., Hofrichter, J., and Eaton, W. (1993) Fast events in protein folding initiated by nanosecond laser photolysis, Proc. Natl. Acad. Sci. U.S.A. 90, 11860-11864.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 11860-11864
-
-
Jones, C.1
Henry, E.2
Hu, Y.3
Chan, C.4
Luck, S.5
Bhuyan, A.6
Roder, H.7
Hofrichter, J.8
Eaton, W.9
-
37
-
-
0033516702
-
Raman optical activity of filamentous bacteriophages: Hydration of á-helices
-
Blanch, E. W., Bell, A. F., Hecht, L., Day, L. A., and Barron, L. D. (1999) Raman optical activity of filamentous bacteriophages: Hydration of á-helices, J. Mol. Biol. 290, 1-7.
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 1-7
-
-
Blanch, E.W.1
Bell, A.F.2
Hecht, L.3
Day, L.A.4
Barron, L.D.5
-
38
-
-
0020024242
-
Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding
-
Kim, P. S., and Baldwin, R. L. (1982) Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding, Annu. Rev. Biochem. 51, 459-489.
-
(1982)
Annu. Rev. Biochem.
, vol.51
, pp. 459-489
-
-
Kim, P.S.1
Baldwin, R.L.2
-
39
-
-
0029878720
-
VMD: Visual molecular dynamics
-
Humphrey, W., Dalke, A., and Schulten, K. (1996) VMD: Visual molecular dynamics, J. Mol. Graphics 14, 33-38.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
|