A survey of ammonia-assimilating micro-organisms in cattle manure composting

Journal of Applied Microbiology

Volumn 99, Issue 6, 2005, Pages 1356-1363

  Sasaki, H ^a   Yano, H ^a   Sasaki, T ^a   Nakai, Y ^a  

^a TOHOKU UNIVERSITY   (Japan)

Author keywords

Actinomycete; Ammonia; Cattle manure; Compost; Microbial community

Indexed keywords

BACTERIA; COMPOSTING; DNA SEQUENCES; ELECTROPHORESIS; FERTILIZERS; GENE ENCODING; MANURES; POLYMERASE CHAIN REACTION;

16S RIBOSOMAL DNA; ACTINOMYCETE; CATTLE MANURES; COMPOST; COMPOSTING PROCESS; DNA SEQUENCING; MANURE COMPOSTING; MICRO-ORGANISMS; MICROBIAL COMMUNITIES; POLYMERASE CHAIN REACTION-DENATURING GRADIENT GEL ELECTROPHORESES (PCR-DGGE);

AMMONIA;

AGAR; AMMONIA; DNA 16S;

AMMONIA; COMPOST; MICROBIAL COMMUNITY;

ACTINOBACTERIA; AEROBIC BACTERIUM; AMMONIA FORMATION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CATTLE; COMMUNITY STRUCTURE; COMPOSTING; CULTURE MEDIUM; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA SEQUENCE; MICROFLORA; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; REVIEW; SPECIES DISTRIBUTION;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); BOS TAURUS;

EID: 28444475931     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2005.02717.x     Document Type: Review

References (42)

1. 15N-NMR study of ammonium assimilation in Agaricus bisporus. Biochim Biophys Acta 1310, 74-80.
2. Bakalidou, A., Kampfer, P., Berchtold, M., Kuhnigk, T., Wenzel, M. and Konig, H. (2002) Cellulosimicrobium variabile sp. nov., a cellulolytic bacterium from the hindgut of the termite Mastotermes darwiniensis. Int J Syst Evol Microbiol 52, 1185-1192.
3. Blanc, M., Marilley, L., Beffa, T. and Aragno, M. (1997) Rapid identification of heterotrophic, thermophilic, spore-forming bacteria isolated from hot composts. Int J Syst Evol Microbiol 47, 1246-1248.
4. Boom, R., Sol, C.J.A., Salimans, M.M.M., Jansen, C.L., Wertheim-van Dillen, P.M.E., and van der Noordaa, J. (1990) Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28, 495-503.
5. Bull, A.T., Goodfellow, M. and Slater, J.H. (1992) Biodiversity as a source of innovation in biotechnology. Annu Rev Microbiol 46, 219-252.
6. Coultate, T.P. and Sundaram, T.K. (1975) Energetics of Bacillus stearothermophilus growth: molar growth yield and temperature effects on growth efficiency. J Bacteriol 121, 55-64.
7. Eghball, B. and Power, J.F. (1994) Beef cattle feedlot manure management. J Soil Water Conserv 49, 113-122.
8. Eichner, C.A., Erb, R.W., Timmis, K.N. and Wagner-Dobler, I. (1999) Thermal gradient gel electrophoresis analysis of bioprotection from pollutant shocks in the activated sludge microbial community. Appl Environ Microbiol 65, 102-109.
9. Fogarty, A.M. and Tuovinen, O.H. (1991) Microbial degradation of pesticides in yard waste composting. Microbiol Rev 55, 225-233.
10. Fujino, Y. and Kume, S. (1991) Isolation and identification of thermophilic bacteria from sewage sludge compost. J Ferment Bioeng 72, 334-337.
11. Golueke, C.G. (1992) Bacteriology of composting. Biocycle 33, 55-57.
12. Heuer, H., Krsek, M., Baker, P., Smalla, K. and Wellington, E.M. (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl Environ Microbiol 63, 3233-3241.
13. Horn, H.H.V., Wilkie, A.C., Powers, W.J. and Nordsted, R.A. (1994) Components of dairy manure management systems. J Dairy Sci 77, 2008-2030.
14. Ichida, J.M., Krizova, L., LeFevre, C.A., Keener, H.M., Elwell, D.L. and Burtt, E.H. (2001) Bacterial inoculum enhances keratin degradation and biofilm formation in poultry compost. J Microbiol Methods 47, 199-208.
15. Kim, S.B., Falconer, C., Williams, E. and Goodfellow, M. (1998) Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Int J Syst Evol Microbiol 48, 59-68.
16. LaMontagne, M.G., Michel, F.C. Jr, Holden, P.A. and Reddy, C.A. (2002) Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis. J Microbiol Methods 49, 255-264.
17. Mackie, R.I., Stroot, P.G. and Varel, V.H. (1998) Biochemical identification and biological origin of key odor components in livestock waste. J Anim Sci 76, 1331-1342.
18. McCarthy, A.J. (1987) Lignocellulose-degrading actinomycetes. FEMS Microbiol Rev 46, 145-163.
19. McCubbin, D.R., Apelberg, B.J., Roe, S. and Divita, F. Jr (2002) Livestock ammonia management and particulate-related health benefits. Environ Sci Technol 36, 1141-1146.
20. Merrick, M. and Edwards, R.A. (1995) Nitrogen control in bacteria. Microbiol Rev 59, 604-622.
21. Nakai, Y. (2001) Animal waste management and microorganisms. Anim Sci J 72, 1-13.
22. Nakai, Y., Abe, T., Kohda, C. and Ando, T. (1999) Water characteristics and microbial flora in a lagoon system for wastewater from a paddock of dairy cattle. Anim Sci J 70, 38-42.
23. Nakasaki, K., Sasaki, M., Shoda, M. and Kubota, H. (1985) Effect of temperature on composting of sewage sludge. Appl Environ Microbiol 49, 1526-1530.
24. Noble, R., Hobbs, P.J., Dobrovin-Pennington, A., Misselbrook, T.H. and Mead, A. (2001) Olfactory response to mushroom composting emissions as a function of chemical concentration. J Environ Qual 30, 760-767.
25. Noble, R., Hobbs, P.J., Mead, A. and Dobrovin-Pennington, A. (2002) Influence of straw types and nitrogen sources on mushroom composting emissions and compost productivity. J Ind Microbiol Biotechnol 29, 99-110.
26. Norris, T.B., Wraith, J.M., Castenholz, R.W. and McDermott, T.R. (2002) Soil microbial community structure across a thermal gradient following a geothermal heating event. Appl Environ Microbiol 68, 6300-6309.
27. 4+ metabolism in rhizobium-plant symbiosis. Microbiol Mol Biol Rev 66, 203-222.
28. Pedro, M.S., Haruta, S., Hazaka, M., Shimada, R., Yoshida, C., Hiura, K., Ishii, M. and Igarashi, Y. (2001) Denaturing gradient gel electrophoresis analyses of microbial community from field-scale composter. J Biosci Bioeng 91, 159-165.
29. Rolleke, S., Gurtner, C., Drewello, U., Drewello, R., Lubitz, W. and Weissmann, R. (1999) Analysis of bacterial communities on historical glass by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. J Microbiol Methods 36, 107-114.
30. Ryckeboer, J., Mergaert, J., Coosemans, J., Deprins, K. and Swings, J. (2003a) Microbiological aspects of biowaste during composting in a monitored compost bin. J Appl Microbiol 94, 127-137.
31. Ryckeboer, J.R., Mergaert, J., Vaes, K., Klammer, S., de Clercq, D., Coosemans, J., Insam, H. and Swings, J. (2003b) A survey of bacteria and fungi occurring during composting and self-heating processes. Ann Microbiol 53, 349-410.
32. Sasaki, H., Maruyama, G., Suzuki, H., Nonaka, J., Sato, M., Sasaki, T., Ohta, M. and Nakai, Y. (2002) Characterization of ammonia-assimilating bacteria in a lagoon for wastewater from a paddock of dairy cattle. Anim Sci J 73, 73-76.
33. Sasaki, H., Maruyama, G., Suzuki, H., Nonaka, J., Sato, M., Sasaki, T., Ohta, M. and Nakai, Y. (2004) Distribution of ammonia assimilating bacteria in the composting process. Compost Sci Util 12, 108-113.
34. +-dependent glutamate dehydrogenase (gdhA) from Agaricus bisporus. Mol Gen Genet 250, 339-347.
35. 1-pyrroline-5-carboxylate dehydrogenase which is expressed in fruit bodies but not in gill tissue. Appl Environ Microbiol 63, 57-62.
36. Strom, P.F. (1985) Identification of thermophilic bacteria in solid-waste composting. Appl Environ Microbiol 50, 906-913.
37. Sukesan, S. and Watwood, M.E. (1998) Effects of hydrocarbon enrichment on trichloroethylene biodegradation and microbial populations in finished compost. J Appl Microbiol 85, 635-642.
38. Tiquia, S.M. (2002) Evolution of extracellular enzyme activities during manure composting. J Appl Microbiol 92, 764-775.
39. Tiquia, S.M. and Tam, N.F.Y. (2000) Fate of nitrogen during composting of chicken litter. Environ Pollut 110, 535-541.
40. Torsvik, V.L., Goksoyr, J. and Daae, F.L. (1990) High diversity in DNA of soil bacteria. Appl Environ Microbiol 56, 782-787.
41. 13C NMR. J Agric Food Chem 49, 2709-2716.
42. Zehr, J.P. and Ward, B.B. (2002) Nitrogen cycling in the ocean: new perspectives on processes and paradigms. Appl Environ Microbiol 68, 1015-1024.